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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059253 ID=TCONS_00059253|Name=TCONS_00059253|organism=Clytia hemisphaerica|type=transcript|length=2498bpRun BLAST on NCBI protein sequence of TCONS_00059253-protein >TCONS_00059253-protein ID=TCONS_00059253-protein|Name=TCONS_00059253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp NDLYQHFQNNNIESHMYASQWFLTLFTAKFPLSLVFNIIDIIFCEDLDSIRun BLAST on NCBI transcript from alignment at scaffold_320:233915..240649- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059253 ID=TCONS_00059253|Name=TCONS_00059253|organism=Clytia hemisphaerica|type=transcript|length=6735bp|location=Sequence derived from alignment at scaffold_320:233915..240649- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_320:233915..240649- >TCONS_00059253 ID=TCONS_00059253|Name=TCONS_00059253|organism=Clytia hemisphaerica|type=CDS|length=10530bp|location=Sequence derived from alignment at scaffold_320:233915..240649- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059253 vs. Swiss-Prot (Human)
Match: RBGP1 (Rab GTPase-activating protein 1 OS=Homo sapiens GN=RABGAP1 PE=1 SV=3) HSP 1 Score: 216.083 bits (549), Expect = 2.453e-58 Identity = 147/354 (41.53%), Postives = 225/354 (63.56%), Query Frame = 3
Query: 6 DLYQHFQNNNIESHMYASQWFLTLFTAKFPLSLVFNIIDIIFCEDLDSIFQIAAALLKTARKDLLQLDFEGILKYFRINMPKYYMLEPHRKDLVKTIYDIXXXXXXXXXXXQEYVQMKEEQELKEDPVERLKRENGELQMEKLRLERENDSLAYEVVTTQVSMQEIITDREEKLNEMIKETEQLRNHLTDXXXXXXXXXXXXXXXKDMWRDSMRQADENKAKLNRIIDDYKQILARLEERNEKLKRDFTAETELLKKQLSTCENCTNALMKNIYPDEDDKGGPREPTITKLLSKEDHEE-------QMRSLEEELIKTKVALAEEKNRADEIEMKLH---NLMSANEKPWYKKV 1037
DLY HF + ++E+HMYASQWFLTLFTAKFPL +VF+IID++ CE + IF +A LLKT++ DLL DFEG LK+FR+ +PK Y E + K L++ ++KIS+KK+ KY++EY M+E+Q +EDP+ER +REN LQ +RLE+END LA+E+VT+++++++ + + EEK + + KE + L DAEEE RL+ E A++K+M R + +A+ K + II DYKQI ++L ER EK + E E +++++ CE C K +G + + TK + ED +E Q+R +E EL +TK+ L E + + ++E L N + A +K W+ +
Sbjct: 708 DLYNHFLDISLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNVALGLLKTSKDDLLLTDFEGALKFFRVQLPKRYRSEENAKKLMELACNMKISQKKLKKYEKEYHTMREQQAQQEDPIERFERENRRLQEANMRLEQENDDLAHELVTSKIALRKDLDNAEEKADALNKELLMTKQKLIDAEEEKRRLEEESAQLKEMCRRELDKAESEIKKNSSIIGDYKQICSQLSERLEKQQTANKVEIEKIRQKVDDCERCREFFNK--------EGRVKGISSTKEVLDEDTDEEKETLKNQLREMELELAQTKLQLVEAECKIQDLEHHLGLALNEVQAAKKTWFNRT 1053 The following BLAST results are available for this feature:
BLAST of TCONS_00059253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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