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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059234 ID=TCONS_00059234|Name=TCONS_00059234|organism=Clytia hemisphaerica|type=transcript|length=2058bp ttccagttaaaagaattgaaaaaagtaaataaagtaaaaaagattgaaat tacAACACTAAATGGAAGATTCAGAATTGCTCGAAGATTTGAAATGTGGG ATTTGCTTGGAGTTACTGGTGGACCCAACTTCATTATCTTGTGGACACAC AGTTTGCCGCTATTGTCTTGCTCAATGGTGGGTTAAATCCAGGAAGCGTA TCTGTCCTCAATGTCGCCAGCAATGGTCAGGATTTCCAAAAGTTAATGTT ACACTAAGAAATACCATCGTATCTCTATACAAATCACAGTCCAAGGAAAA ACTAGACTCACTGAAAAGTGATCCTACATATGATGATATAATGAATAAGT TTGAATTGTTgggaaatgttgaaaatagaaacTCCAGGAATAATAACAGC AGATTCTCGTGGACTGGATTTTGCATATTGTTTGCAATAGCAGTTGGCCT TGTTGTGATTGTTTCTCTTGGCTTCAAAAACATGGGTGGGTTGTCCAAAG AAAGTTTGAAATCAAAAGCTCTTGAACATTGGACTGTGCATGATGTTGGC TTTTGGGTTGGAACTCTTGGTGATTGGGCTTctgtttatcaaaataattt tgttaatGCAGGCATCAATGGAGACCTTTTGGGATTATTTTCAAACCATG CAGAATTGGAGGATCCAAAAATTAACATGACTGTCAAAATACATCAAACC AAATTCCTGAACGAATTGAAAATTCTAAAGGAAACATTACCTGCTTCCTC TTTTGATATTTGGAGCTACAAGGAACGGAAGAATGAAATGGCAATGTTTA TAATGCTTGGTGTGCGAGAATTTCCACGTGCAACTGTTGTATATTTATAC CTGTTCAACTATTGGGATACTTTCCTACCCTTTTTTTCTGCATGTGTTAA ACACGAGGAAGACTATACTACTAAACAACTCATCGATTTGAGCAACACTA TTGGACCTCACGAGTGGTCATCATGCATGCTTTCTTTATGACTCTAACTG AATTTGCAAAGTATCCTGGTATTGTTTCATCACGTGATGCAAGACGGGTG CACATCAAAGCGTTGAAATACTTTGGTTTCGTCCTCATCTCatcattttt cttcaaaatcttcTGGTCTTTCATTCCAATGTTCATTGCTGATTGTATCT TCTACTGGATGTTGTATGTCAGCCCATTTGATGCTGCTAATAGGCTCATA AAAAGGATGTTCAGAGCACGAAGAGTTGAAGATCATGCAGCAAGTGATGA GCAGGTGGTGGATGATACAGGAACTGAAGTTCATCAACACCAACACCAAC ACCAtcaccaacaacaacaacaacaacaacaacaacaacaacaacaacaa caacaagctgGCGGTAGTCGTGGATGGCATTTCAATTTCCACTGGAGCTC CCATGATCATTAAAAGTCTTTAGACTTATAACTTGATGTTATAAAAACAC CACAGAAAGGCATTGGTTCCTTTCCCGTTTCTTGCCCATAACACGTCGAA ACAATGTTGCCTGTCTTTGTAGCTAATATTACGTGtcttgttttaaaaaa ttcataacTTTGGACTTTTTTTCGCATAATACAACCTCAGGGTCTTGCTT GTTAATTTTCTTCAGCCTATAAATAtggttttttatttcattatctGGCA CGAAGACGAAGGTTTGATTGCAACACTTCACACCattatccattgttttc aagtttaGTATTTTTTAACCGCGGTTTTGTAACAAGATGTTTATGGGAGC GCAAACAGTCCTGATAGCCCTTAATTCATTTCGACCTCGATACCACCTAT ATGTGGTATTTGGTTCTTTATGAGATGGACCAAAATTTTTAACGACATAA TTTTTAATTAGTTGTTAGATCACCAAAAAACGAAATTATAATTGGAATAg attaaattttattattgtAATATTTGAAAgagtcttttattttttattaa aaaattagaCTGATTATTTTACCTCTTATTTACATAGATGATACACTGTA AGATATTTATATGtaattttaaatgtttcttgaaaagaaaattttatttc tctCTGCT Run BLAST on NCBI transcript from alignment at scaffold_320:44927..50404- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059234 ID=TCONS_00059234|Name=TCONS_00059234|organism=Clytia hemisphaerica|type=transcript|length=5478bp|location=Sequence derived from alignment at scaffold_320:44927..50404- (Clytia hemisphaerica) TTCCAGTTAAAAGAATTGAAAAAAGTAAATAAAGTAAAAAAGATTGAAAT
TACAACACTAAATGGAAGATTCAGAATTGCTCGAAGATTTGAAATGTGGG
ATTTGCTTGGAGTTACTGGTGGACCCAACTTCATTATCTTGTGGACACAC
AGTTTGCCGCTATTGTCTTGCTCAATGGTGGGTTAAATCCAGGAAGCGTA
TCTGTCCTCAATGTCGCCAGCAATGGTCAGGATTTCCAAAAGTTAATGTT
ACACTAAGGTGTGTCAATTATTTCGTGAAATATTGCTTGTGAACTGTTTT
AAGTGTCTCTTTGAGTCGTTGAGAAATTTTGATGTTCAGCCTTGCTTTTC
CGCTGTTCTCCCAGTGACGACACTTATGTGTTAATGTATACATTATATGG
TTAAGTCCCAAAGTATCAGTAATCCTGTCAACTTTTCTGACATTAACTGA
ATGTTGATAATTGACAGGCAACTGGAGAACTAATTTTGATCTACCTTATT
ACAGCAAAATAAGTAGACACATGATTGGCGGCCTTGAAATTAGCATGCAA
AAAATTTTATTTGCTTTTTCAAGGACACCACTGCTGGTTTTCATTAAAAG
AGTTTTAATTAACACAAAATTTCTTAATTCACGTTAATTCCTTGTCTATT
ATTTTTGTGTAATAAGTTATTTATAAAAAGCTGAGTAGGCAATGTAATAG
AACATGCATTAGTTTAAGTCTTTTGATTGCCTTTTAGAAATACCATCGTA
TCTCTATACAAATCACAGTCCAAGGAAAAACTAGACTCACTGAAAAGTGA
TCCTACATATGATGATATAATGAATAAGTTTGAATTGTTGGGAAATGTTG
AAAATAGAAACTCCAGGAATAATAACAGCAGATTCTCGTGGACTGGATTT
TGCATATTGTTTGCAATAGCAGTTGGCCTTGTTGTGGTTAGTGAACAAGC
TAATGGCTTATTTTACTAATTAATTTATCACTTGATAGAAAAACCCCTAT
TGAAGCTCCCTTTCAAAATTCTTTGAATCCGTACTTTAACTCTCCAGACA
GCTTTTTTAAAAAGGATTTTGAGATTTTTCTGTTCTCTATACAAATCAGT
ATATTTTTAATCAAGAATGATGTTAATGTGAAATTTGAATTAATATTCTC
GGTATAATTGATAATCTTCACTTACTTTGTATTTTTGCCAATCTTTTTGA
TACAACTTTGTTTATTCAGATTGTTTCTCTTGGCTTCAAAAACATGGGTG
GGTTGTCCAAAGAAAGTTTGAAATCAAAAGCTCTTGAACATTGGACTGTG
CATGATGTTGGCTTTTGGGTTGGAACTCTTGGTGATTGGGCTTCTGTTTA
TCAAAATAATTTTGTTAATGCAGGTAGTTAAATTGCTTTTATTTCACATA
AGGACATTGGTTTGATACCCTACTTTCCTTTGGGTCACATATCATTATTT
ACCAGCCTTGTTTGTCCCTCTTTTAATAACTTATCAGATAATAAAAGTTT
AGACACCCTTCCCAATAATCTGGTCAGTTCAATACAGATTTCAAAGTTGT
ATTTTACAGGCATCAATGGAGACCTTTTGGGATTATTTTCAAACCATGCA
GAATTGGAGGATCCAAAAATTAACATGACTGTCAAAATACATCAAACCAA
ATTCCTGAACGAATTGAAAATTCTAAAGGAAACATTACCTGCTTCCTCTT
TTGATATTTGGAGCTACAAGGTGAGAGTATGACCATTTTTGGCAAACAAC
TTTAAACACCTAGAGAAATCACCAGCTTTAAGGCTTGTCTCAACTTGCGC
GCGCTGCGATCGCACTTTTTCGAGCAAAGCACGCTATTGGTCAAAAGAAA
AACAAAGCAATTCCATTAGCGCGATCTAACGTAACGGTTGAAAAAAGTTG
AAATGTGTTCAACTTTTTTTCGAGTACGCGCTACATTTTTATAACATAAT
CCTTTTTCCAAGCAAAAAGGATTGAAGCCAAAAAGTGTGATTGCAGCGCG
CGCAGGTGGATACCGGCCTTTATACTCAGAATATACTCATACGAAAAAAT
TCCTTCGTTTCATCAATTTTTTGCTTCTGAAATATATTGTGCAATGAAAT
GATTAAAGTCACTTTCTTGGAAAGAAATGATAAGATTTACTCTGATTAGT
AGTTGAAGTTTATCACTATCAGCTCACTAACTCACATCTTTAATCTTCTC
ATGCTTAATCTTATTGTATCAAAAAAAAACTTACTATGATTTTTCACCTT
GTTGTAGGAACGGAAGAATGAAATGGCAATGTTTATAATGCTTGGTGTGC
GAGAATTTCCACGTGCAACTGTTGTATATTTATACCTGTTCAACTATTGG
GATACTTTCCTACCCTTTTTTTCTGCATGTGTTAAACACGAGGAAGACTA
TACTACTAAACAACTCATCGATTTGGTAAGTGCAACGTAAGAACAAACTA
TATAAGAACATATCTCTTTAATAGCCAAAATATTAAGAACAAGTTAAGAA
TATTTTAAGACTTTGTGGACTCTTAAACACTCGATTGGTGCTTCTTTTTT
GACAGCCTTTTTCTTCATGGATTTTTCCACTTACCCTTTTTACTTATCGA
ACATTGAGTACCATTTTTGAAGCATTAATTGGGATTGAATCCACAACACT
GTGCACCAATGAAGTATAATCCCGAAGAGCTAGAATCAAATCTTTAACCT
TTCTCAGGCAAGAAAAAGTGAAGCCTTTAAAAATATGCGCCGTATTTTTG
ATGACGGATTGAATCTAACGATTCCTTTGTTTTCGAGTGTTATTATTTTC
GAAATTTATGTGTAAGTTTTAGTTTCAATCTGTCGTTTTTGTAAAAAAAA
ATAGACAGACCGCGCTAGACCGCGCAACTTTGTTTCGATTTGGTTGGCTT
CAAATCCTACCAAGGAGATTCGATTCTAGCTCTTTGGGATTATACTTCAT
TGCTGTGCACCTCCTGCCTTTAAGATTTCTGCCTTATTCCTTCAAGCTAA
GAAGTTACCTCTTTTTGTACGCACTAAAAAAGTTGTCTTTTTAATATTAA
AGGATGAGAACCCAACTGTAAACCAATGGTTGGAGTTTATACCTTGGCTC
ATTATTGCGCCTTATGGTTTGATCGCCAAATTTGCATACAACTTTTTAGA
GCAACACTATTGGACCTCACGAGTGGTCATCATGCATGCTTTCTTTATGA
CTCTAACTGAATTTGCAAAGTATCCTGGTATTGTTTCATCACGTGATGCA
AGGTTTGATTATTTTACCCATTGTTGGTGTCCCTTTAGAGAACACACAAT
AAAAGCCTTTTTATAATATTGACTGGAGGCTCAAGGAATGCAGATTTTTT
GTTGTGACTTTTGTGATTTTAAGACAGTATTTTATAATAAGAAATATTTT
AATTTTATCTTCATTTTATTTCAGACGGGTGCACATCAAAGCGTTGAAAT
ACTTTGGTTTCGTCCTCATCTCATCATTTTTCTTCAAAATCTTCTGGTCT
TTCATTCCAATGTTCATTGCTGATTGTATCTTCTACTGGATGTTGTATGT
CAGCCCATTTGATGCTGCTAATAGGCTCATAAAAAGGTATTGCTGTAACT
CGGTCTAATGTCGACATCCCTCTTCTAATCCCGACACTCTTCTTTAGAGA
TAGGAATAGTAGAAAGATCGGAATCCACTTATGGGAACTATATTTCTTTG
CTTAGCGACCGGAGAGGAAAAAATCTTTTGTCTATCAGTGATTCTGACCT
TACTATTGTTCCCATCTCTAAAACTGGGTGTCAGAATTAGAAGAGGGATG
TTGACAGTAGACTAGGCTGCACGCATCCCCTCTGATATGATTTGATATAG
GGGATGCGTATCGTCTAAGATATTACTGTCCCAGCTTACCCCCGTCTTTT
CTTTTCTCTTTTTTGATTATGTGTCACAGCTGTACAACGACTTCTCTTTT
TCTTTGTTTAATGAATGAAAATTTATAATTATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTCT
TTCTGTGATTGGATGTAACAAAATTATGTAAATTTATGCAACTTTCGGTT
ACCCCAAATTTGAGGTAACTCTCGGACGAGAATTTCATACACGTTACGCA
TCCCCTATAACAAAATAAATTCTGGGGATGCGTGCAGCCTAACAGTAGAC
TAACTTACGATAGTGGTCACAAAGTATCTGTGGTCAGGTAGCTCATTTGG
TAAAGCATTCGCCTTGCAACCCAAGGGTTGTGTTGTACATCATGCTCATT
TATACATGCGCATAAATGCGAGTTTAGACTCCCCTGTTTGTTTGGTTAGA
AATTTAAATAACGTTTTTTTGTTTCTGTTAATATTATTGTTGTTGTTCTC
TGTTGAAAATGACCACTACTGGGAGCTTTTCTTTTGCTGCTTTATAAACC
TACTGACTTCTTCAGAGTATGTATAAACTCGTAACGTATTATCGTACATT
GTAATGTTTTTATTTTAATCAAAAGGATGTTCAGAGCACGAAGAGTTGAA
GATCATGCAGCAAGTGATGAGCAGGTGGTGGATGATACAGGAACTGAAGT
TCATCAACACCAACACCAACACCATCACCAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAAGCTGGCGGTAGTCGTGGATGGCAT
TTCAATTTCCACTGGAGCTCCCATGATCATTAAAAGTCTTTAGACTTATA
ACTTGATGTTATAAAAACACCACAGAAAGGCATTGGTTCCTTTCCCGTTT
CTTGCCCATAACACGTCGAAACAATGTTGCCTGTCTTTGTAGCTAATATT
ACGTGTCTTGTTTTAAAAAATTCATAACTTTGGACTTTTTTTCGCATAAT
ACAACCTCAGGGTCTTGCTTGTTAATTTTCTTCAGCCTATAAATATGGTT
TTTTATTTCATTATCTGGCACGAAGACGAAGGTTTGATTGCAACACTTCA
CACCATTATCCATTGTTTTCAAGTTTAGTATTTTTTAACCGCGGTTTTGT
AACAAGATGTTTATGGGAGCGCAAACAGTCCTGATAGCCCTTAATTCATT
TCGACCTCGATACCACCTATATGTGGTATTTGGTTCTTTATGAGATGGAC
CAAAATTTTTAACGACATAATTTTTAATTAGTTGTTAGATCACCAAAAAA
CGAAATTATAATTGGAATAGATTAAATTTTATTATTGTAATATTTGAAAG
AGTCTTTTATTTTTTATTAAAAAATTAGACTGATTATTTTACCTCTTATT
TACATAGATGATACACTGTAAGATATTTATATGTAATTTTAAATGTTTCT
TGAAAAGAAAATTTTATTTCTCTCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059234-exon-scaffold_320-1575043694:50147..50404 | TCONS_00059234-exon-scaffold_320-1575043694:50147..50404 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1575043694:49469..49667 | TCONS_00059234-exon-scaffold_320-1575043694:49469..49667 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1575043694:49032..49185 | TCONS_00059234-exon-scaffold_320-1575043694:49032..49185 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1575043694:48685..48845 | TCONS_00059234-exon-scaffold_320-1575043694:48685..48845 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1575043694:47980..48147 | TCONS_00059234-exon-scaffold_320-1575043694:47980..48147 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1575043694:47153..47255 | TCONS_00059234-exon-scaffold_320-1575043694:47153..47255 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1575043694:46819..46980 | TCONS_00059234-exon-scaffold_320-1575043694:46819..46980 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1575043694:44927..45779 | TCONS_00059234-exon-scaffold_320-1575043694:44927..45779 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1510915933:50147..50404 | TCONS_00059234-exon-scaffold_320-1510915933:50147..50404 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1510915933:49469..49667 | TCONS_00059234-exon-scaffold_320-1510915933:49469..49667 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1510915933:49032..49185 | TCONS_00059234-exon-scaffold_320-1510915933:49032..49185 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1510915933:48685..48845 | TCONS_00059234-exon-scaffold_320-1510915933:48685..48845 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1510915933:47980..48147 | TCONS_00059234-exon-scaffold_320-1510915933:47980..48147 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1510915933:47153..47255 | TCONS_00059234-exon-scaffold_320-1510915933:47153..47255 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1510915933:46819..46980 | TCONS_00059234-exon-scaffold_320-1510915933:46819..46980 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1510915933:44927..45779 | TCONS_00059234-exon-scaffold_320-1510915933:44927..45779 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1491911889:50147..50404 | TCONS_00059234-exon-scaffold_320-1491911889:50147..50404 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1491911889:49469..49667 | TCONS_00059234-exon-scaffold_320-1491911889:49469..49667 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1491911889:49032..49185 | TCONS_00059234-exon-scaffold_320-1491911889:49032..49185 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1491911889:48685..48845 | TCONS_00059234-exon-scaffold_320-1491911889:48685..48845 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1491911889:47980..48147 | TCONS_00059234-exon-scaffold_320-1491911889:47980..48147 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1491911889:47153..47255 | TCONS_00059234-exon-scaffold_320-1491911889:47153..47255 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1491911889:46819..46980 | TCONS_00059234-exon-scaffold_320-1491911889:46819..46980 | Clytia hemisphaerica | exon |
TCONS_00059234-exon-scaffold_320-1491911889:44927..45779 | TCONS_00059234-exon-scaffold_320-1491911889:44927..45779 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_320 | supercontig | scaffold_320:44927..50404 - |
Blast
BLAST of TCONS_00059234 vs. Swiss-Prot (Human)
Match: BFAR (Bifunctional apoptosis regulator OS=Homo sapiens GN=BFAR PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 5.838e-50 Identity = 86/288 (29.86%), Postives = 149/288 (51.74%), Query Frame = 2
Query: 80 LEDLKCGICLELLVDPTSLSCGHTVCRYCLAQWWVKSRKRICPQCRQQWSGFPKVNVTLRNTIVSLYKSQSKEKLDSLKSDPTYDDIMNKFELLGNVEXXXXXXXXXXXXWTG---FCILFAIAVGLVVIVSLGFKNMGGLSKESLKSKALEHWTVHDVGFWVGTLGDWASVYQNNFVNAGINGDLLGLFSNHAELEDPKINMTVKIHQTKFLNELKILKETLPASSFDIWSYKERKNEMAMFIMLGVREFPRATVVYLYLFNYWDTFLPFFSACVKHEEDYTTKQLI 934
+ + C C ++LV+PT+L+CGH+ CR+CLA WW S+K CP+CR++W GFPKV++ LR+ I L+ + + + ++ + + F+ GN + + N G F + G+ V++ + + + L KA+ WT +V W+ LG WAS+Y+ F++ +NG LL L E + H+ L EL+ +K ++W YK ++F++ ++ PR +++YLYLF+Y DTFLPF +ED + + ++
Sbjct: 29 VSEFSCHCCYDILVNPTTLNCGHSFCRHCLALWWASSKKTECPECREKWEGFPKVSILLRDAIEKLFPDAIRLRFEDIQQNNDIVQSLAAFQKYGNDQIPLAPNTGRANQQMGGGFFSGVLTALTGVAVVLLVYHWSSRESEHDLLVHKAVAKWTAEEVVLWLEQLGPWASLYRERFLSERVNGRLL-LTLTEEEFSKTPYTIENSSHRRAILMELERVKALGVKPPQNLWEYKAVNPGRSLFLLYALKSSPRLSLLYLYLFDYTDTFLPFIHTICPLQEDSSGEDIV 315 HSP 2 Score: 52.373 bits (124), Expect = 5.838e-50 Identity = 32/100 (32.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query: 937 FEQHYWTSRVVIMHAFFMTLTEFAKYPGIVSSRDARRVHIKALKYFGFVLXXXXXXXXXXXXXPMFIADCIFYWMLYVSPFDAANRLIKRMFRARRVEDH 1236
E HYWTSR +I++A +++ E + I S + + V + +F V F +FW IP F+ +C+FYW LY +P + ++K + RR+E
Sbjct: 352 LEVHYWTSRFLIINAMLLSVLELFSFWRIWSRSELKTVPQRMWSHFWKVSTQGLFVAMFWPLIPQFVCNCLFYWALYFNPIINIDLVVKEL---RRLETQ 448
The following BLAST results are available for this feature:
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