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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059231 ID=TCONS_00059231|Name=TCONS_00059231|organism=Clytia hemisphaerica|type=transcript|length=2331bpRun BLAST on NCBI protein sequence of TCONS_00059231-protein >TCONS_00059231-protein ID=TCONS_00059231-protein|Name=TCONS_00059231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp MEQITSLEQVRQLMLVQDAKSVNKAQQFNISSFELEKHSLTLDDLLNRGVRun BLAST on NCBI transcript from alignment at scaffold_320:18090..44612- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059231 ID=TCONS_00059231|Name=TCONS_00059231|organism=Clytia hemisphaerica|type=transcript|length=26523bp|location=Sequence derived from alignment at scaffold_320:18090..44612- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_320:18090..44612- >TCONS_00059231 ID=TCONS_00059231|Name=TCONS_00059231|organism=Clytia hemisphaerica|type=CDS|length=42399bp|location=Sequence derived from alignment at scaffold_320:18090..44612- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059231 vs. Swiss-Prot (Human)
Match: VWA3A (von Willebrand factor A domain-containing protein 3A OS=Homo sapiens GN=VWA3A PE=2 SV=3) HSP 1 Score: 332.413 bits (851), Expect = 4.114e-98 Identity = 204/671 (30.40%), Postives = 348/671 (51.86%), Query Frame = 1
Query: 139 ITSLEQVRQLMLVQDAKSVNKAQQFN---ISSFELEKHSLTLDDLLNRGVSIRDDSTPTGWRHITVKDNDFLEFRFKLTKLIAELQKQIEFMMTSSRRVFGNLNGHSICFLVDCSEANFYGDRKMLLKEAFKLLVEEQLLNKTKVQLISFSSNAQTIWNKPMMLAEMKKHEVFDWIDNLVSGTGCNLLEALKLSAKQQDVETVCIILGSRPDQDPDILINYMKEKSVGQARIYHTVDLDSKSYEAKMLMKELSDIDDGKYQSFTEDKNHDMMNSTDTCLLSQELKRALIVLSQLDEISSGGIVKNTIVNIKKNPSEAYKQAQ----RKEDKERELLRHQYEQLKIHHSVVESRSSKEWLKKQGLKAKGLTLYQVMAPNAYSYVQSYVPSLNKHVTSQIHHKSMVQMEWHDGSLKNVHVDPVILFNYQNHLRSALTVYQKRVEWLQGASRKYYGNIVEKRVVFIVDLSINTQYGLGELHLSLKQLFEDQLTTDMTFNMICIGKSLMFFNEGGLLKATMENVGACWRWFSKLSCGGTRKCLPALSHVCQTYVMEQNG--LDGIYLIASGTPNEPLDVLNGYAKEALHGTDVSLN-CILFGSVTRLDCLE--HYEDIDQVASYLREISHQNNGRFHWIDNQVIVESDDVRLIEEEMSHANNYLNKAVMLFEKLR 2115
+T + Q + L+ +Q +++ + + + +S+ L+ LTL DL+++G + ++ T + I F KL+ I Q++I+++ +S++ FG + G + L+D S A G +K ++ L++EQL +K K+ ++SF +NA ++W PM ++ E+ W+ L G NLL+ALK + ++++ I+ S PDQ +IL +Y+++ ++G+ I H + ++K L++ G Y ++ H S D L E+++A +LS + + + +++ +E K K L ++ L ++S EWLK GLKAK L+LYQV+APNA+S V+ +VP L K V+S IH K+M+Q EWHDG++KN+HVDP L+ YQ L A+ +Y++R+EWL ASR+ +G + EKRVV ++D+S + + SL+ L E+QL+ FN+I G ++ + ++ + N+ + WRW L C G+R L AL + +++ GIYL G P++ + L+ Y EA G D+ LN C+ + ++D Y A+ +E++ GRFHW + I ESDD+ I EM A NY K L L+
Sbjct: 65 VTHVNQTQDLLRLQGSETQSSDWEDSEDWLSAHSLKCQKLTLADLISQGTEVLEEGTNVV-QKICFSTQIIRHFESKLSDTIEVYQERIQWLTENSKKAFGLIKGARVSILIDVS-AISSGPQKEEFQKDLMSLIDEQLSHKEKLFVLSFGTNAGSLWPDPMEVSASTLQELKLWVKTLQPDGGSNLLQALKKIFTLKGLDSLVAIMRSCPDQPSEILSDYIQQSTMGRDLIIHFITYRCDDQMPPAVLKNLAEAVRGYYHCYSPKMEH--YTSRDMDELLAEIQKAQSLLSHVQALQHSSPCEALTCTMEEISTEITNGPLISLLPKPPKHDAPLTIEFPNL--------DKTSAEWLKVNGLKAKKLSLYQVLAPNAFSPVEEFVPILQKTVSSTIHEKAMIQFEWHDGTVKNIHVDPPFLYKYQQQLSRAMRMYERRIEWLSLASRRIWGTVCEKRVVVLLDISATNSMYIIHIQHSLRLLLEEQLSNKDCFNLIAFGSTIESWRP-EMVPVSHNNLQSAWRWALNLRCRGSRNVLSALRKAVEVDFKDKDKHQSQGIYLFTGGIPDQDMPTLSAYMAEACGGCDLQLNVCLFYVGEPKMDTTPPARYASHTDTAAAYKEVTRAAGGRFHWFGDTGIYESDDINSIMSEMEKALNYSQKCAFLMASLK 722 The following BLAST results are available for this feature:
BLAST of TCONS_00059231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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