TCONS_00059226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059226
Unique NameTCONS_00059226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059226 ID=TCONS_00059226|Name=TCONS_00059226|organism=Clytia hemisphaerica|type=transcript|length=917bp
GAAAAAGGATCTAGCAGCTGCGCTGATGTAAACAAAACTAGCCCGtgatc
gtttttttttaataatcatTACGTGATTTTCGGCACAcggtaaattttac
tttagaaCACATGCCTTTAGAACGACGAAGTGACGAAGGGAACGGAGAGC
AAAGGCACGTGGTTTACACttagaaatcaaataaaatacaaattttgact
taaacacACCACAAAATCTACAATGGTTGACGAAGAGATAAACCCAAAAG
CTTACCCCTTGGCTGATGCTACCCTAACTGTCACTATTCTTGACTTGATT
CAACAAGCTGCAAACTACAAGCAACTCTTGAAAGGAGCAAACGAGTCAAC
AAAAGCATTGAATCGTGGTATAGCAGAATTCATTGTGATGGCTGCTGATG
CAGAACCCTTGGAAATCCTTTTGCATTTACCTTTGCTGTGTGAAGATAAG
AATGTACCTTACGTTTTCGTGAAGTCGAAACAAGCTTTGGGTCGTGCCAC
CGGTGTCTCCCGACCAGTCATTGCATGCGCAGTCACCATTAACGAAGGCT
CACAACTGAAAAGTCAAATCCAATCCTTACAAAACGCCATCGAGAAGCTT
CTTCTTTAAACAGGAGTGTTAGCCGAGTTATTCATACATGTACGTCCTTT
CCTCGATCGCTTATCGTGTATCTTAACAGGATGTTGCTTGGTGGTTAGCT
AATGAGAGGGGTTGATCGAGAGGGACTTGATGATACATGTTTATGTTGAC
GGAGCTTAAAAAATGATCAACGGGTTTTATATATTTgtgtttttatactt
tttttttctttgctagATATAATACTTGCTATCcaagtaaaatatatttt
taggtcAAACAAAAGATAACAAAATTTCTTGATGTAAGTTCTTCCCTTTG
AATAAAGTCAATTCTGC
Run BLAST on NCBI

protein sequence of TCONS_00059226-protein

>TCONS_00059226-protein ID=TCONS_00059226-protein|Name=TCONS_00059226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MVDEEINPKAYPLADATLTVTILDLIQQAANYKQLLKGANESTKALNRGI
AEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVKSKQALGRATGVSRPVI
ACAVTINEGSQLKSQIQSLQNAIEKLLL
Run BLAST on NCBI

transcript from alignment at scaffold_320:80202..84003+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059226 ID=TCONS_00059226|Name=TCONS_00059226|organism=Clytia hemisphaerica|type=transcript|length=3802bp|location=Sequence derived from alignment at scaffold_320:80202..84003+ (Clytia hemisphaerica)
GAAAAAGGATCTAGCAGCTGCGCTGATGTAAACAAAACTAGCCCGtgatc
gtttttttttaataatcatTACGTGATTTTCGGCACAcggtaaattttac
tttagaaCACATGCCTTTAGAACGACGAAGTGACGAAGGGAACGGAGAGC
AAAGGCACGTGGTTTACACttagaaatcaaataaaatacaaattttgact
taaacacACCACAAAATCTACAATGGTAAGCCATTTTCTTTCGTAGTTTG
TAGAGAAGAGAACTAGTGCACTATTGGTAGATGATAGAGCAGTTACATAA
ATCACTTTTTCAGtgctttgaaaatttatttctaGTAGTATATAGTAGTT
GTGCAAACTTGTATCtTATTCTTGTATCTgatttatttcaattatttgaC
ATGGTTgactagacaggagacccgtcctgtatttttataatcttatgTAT
ACAGGACAggtatgacctgtgaggcagatttctgcctcaaaaaattttaC
ACCATTTACAGTGGGATATTCAAATTAAACCTGCCtcaggcggcaatcac
aaatatcttcatttcgcgtccttgttgggtctaaaaagtgagtcagtcGT
TCATAAAAAATTTCGGGTTTTCTTACCTCCTATCTGTCTAGGCCGCCCGC
GTGAGCCCTAATAGTTTTTCTTTCGCGACATTCTGGTGGAAAACTATATT
CTTCAAAGGAAGAATGCGAAGAACTTGCCAAAAAAAAACCCTAGACAAAA
AGATTCTTTCGAGGTTGGGAATTGAtcctgcgaagatgaaaaaattttga
ctagggttttttttggcaaacccaaaaactctaatttttttcttctctca
agctaaaaaggttacaGGTTTTGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNttagaatttcaaaagaagacA
TTATACATTTGGTATCTCTTTCTCTTGTGTGGACATGCAAAATGAAGACC
Ttgcattgtttgaaattttttccattctaacacttttgtttttttttgta
ttgtaGTGTGTGCGTGCGGGTGTGTGATATGTGATAAAGTTTGTTTATTG
AAATGAATGACAAATAAAGAACGCAGCTATTTTCATGTggtgtttacaat
tttcttaagtCAGAATTGTCTTCtactcacttttttcaaaataacagtTT
CCtttcttgttaaaattttttattaaaaattttattttcttattaaaagt
tCTGATAGGTTAGTTCTATTgttctttaacttttatttttctagttTATT
TTGCTAGCTTTTTAATAAGCTTTGTGATAGTTTTAGTTTTAAATTCTGAA
GAGTTCagatttttaagcataaattaaaattttttttcaaattttggtgg
gGGCTAAATCTCAGGCATTTCAATGGATCTATTTTAGTGTGGTTTCTTTT
GCGAAGATTCTGATGAGGTGTAGTTGAGCTGACCAATCTTTCAGAGTCCA
GACTCAAGGACCCCCCCTctctaaaaaaaaactaaattttacaagTGTGC
TTTACAAGTAAGTGTGCAGAAGTGTGCACCAAATATGAAttggcatcttt
ggtgaaaTTTTTGGACCCACAAGGAATTTTCAACCCATAAGCATTGATGC
TCCACAAACCCACATGGTTTCTTTTGGACCCACGAGACattttgacccac
gaacccacaaGCAATTTAAACCCCATACATACGTAATTTAGCACACTCCA
GTGAAGAgtgaattttggttgatttaaaaaaaaattgtttactgACATGT
GTTTTTATTCTTGCTTGGGGAATGTTGTGGAGAAAATCACAccgtttcaa
ttgttttttacaAATCAATGAGTTCCCTTTCTCATAATAAGGAAGCATTC
GATATGGGAtcagatttttaaaagataTGTTTTTGGGCAAACTATTGTGG
CCCCCTAGGTCATGAGATCTGACTATTAGGTCTAGTTTAAAAGATTTAAA
TGTTCACAATTTTATCTTTTAAGTCGACTCATCTGATTCTCCAGATATAA
GTTTGCCTCTACAATTCAAGTATAAAATTGTCTGGTAGATGACATCtttt
taatttctattttattttatttctaatgtttctattttttctGAAAGGTT
GACGAAGAGATAAACCCAAAAGCTTACCCCTTGGCTGATGCTACCCTAAC
TGTCACTATTCTTGACTTGATTCAACAAGCTGCAAACTACAAGCAACTCT
TGAAAGGAGCAAACGAGTCAACAAAAGCATTGAATCGTGGTATAGCAGAA
TTCATTGTGATGGCTGCTGATGCAGAACCCTTGGAAATCCTTTTGCATTT
ACCTTTGCTGTGTGAAGATAAGGTAAATTTGTTAAAGTTTATCCAGGTTT
ATCGTTACTTTGCCTTTTAAGAAACTTGCGTATTGTTTTGCACTAAGGAG
TGGTAACTTTCCAGAAACGTCGTTTTCCAATATTGGTTGTCTTTTGAGAA
ATAATCATTATGCACCTTGGTAAGCTcctcgaaaattaaaaatggctGCT
GATAGTAATATATGGCTATTAAGTAATACAAActgttttttaataatttt
tgtaGAATGTACCTTACGTTTTCGTGAAGTCGAAACAAGCTTTGGGTCGT
GCCACCGGTGTCTCCCGACCAGTCATTGCATGCGCAGTCACCATTAACGA
AGGCTCACAACTGAAAAGTCAAATCCAATCCTTACAAAACGCCATCGAGA
AGCTTCTTCTTTAAACAGGAGTGTTAGCCGAGTTATTCATACATGTACGT
CCTTTCCTCGATCGCTTATCGTGTATCTTAACAGGATGTTGCTTGGTGGT
TAGCTAATGAGAGGGGTTGATCGAGAGGTACAGCTTTTTTACAGTATGTT
TCTCTGTTTCCAGTAAGCAAacctgtaaaaatattttcccgttCAAAGTC
ATTCTAAATCTTAAGTTATCGAAAAATTCCTTtagggaaaatatttttaa
ggatGTGCCTTCTGAAATGGGGTAAGGTTTTAGTCAGGGTTTTTCTCTAA
AAGAGGTTGCTGTTTTCACAGCATGCTATCAGTTGTCACCAGTTTAAACT
CGAGACATTTCCTTGCGTCATTCCTCTCTTTTTCCGCCCTATTGGTGTTT
TTTCTACTGCATTTGTTGTCTTATTTGtctcctcgttttcaaaatactgT
TTCGACTTATATCCTAAATAAGTTTTAGAAAAACCCTTTGAGACTATGAC
TCATATACCCGTTTTTCAAACAGAATTCTGCTGTTAAAAGCCATAATTAC
CTCTAACTCTCTCAATATAACAACAACGAAAAATTTatggaaaatataaa
aagaaaattggtgGAATTTTCACTGGTCTACTTGAAATTATTAATTGTTT
ACAAAAGGGACTTGATGATACATGTTTATGTTGACGGAGCTTAAAAAATG
ATCAACGGGTTTTATATATTTgtgtttttatactttttttttctttgcta
gATATAATACTTGCTATCcaagtaaaatatatttttaggtcAAACAAAAG
ATAACAAAATTTCTTGATGTAAGTTCTTCCCTTTGAATAAAGTCAATTCT
GC

Coding sequence (CDS) from alignment at scaffold_320:80202..84003+

>TCONS_00059226 ID=TCONS_00059226|Name=TCONS_00059226|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_320:80202..84003+ (Clytia hemisphaerica)
ATGGTTGACGAAGAGATAAACCCAAAAGCTTACCCCTTGGCTGATGCTAC
CCTAACTGTCACTATTCTTGACTTGATTCAACAAGCTGCAAACTACAAGC
AACTCTTGAAAGGAGCAAACGAGTCAACAAAAGCATTGAATCGTGGTATA
GCAGAATTCATTGTGATGGCTGCTGATGCAGAACCCTTGGAAATCCTTTT
GCATTTACCTTTGCTGTGTGAAGATAAGAATGTACCTTACGTTTTCGTGA
AGTCGAAACAAGCTTTGGGTCGTGCCACCGGTGTCTCCCGACCAGTCATT
GCATGCGCAGTCACCATTAACGAAGGCTCACAACTGAAAAGTCAAATCCA
ATCCTTACAAAACGCCATCGAGAAGCTTCTTCTTTAAATGGTTGACGAAG
AGATAAACCCAAAAGCTTACCCCTTGGCTGATGCTACCCTAACTGTCACT
ATTCTTGACTTGATTCAACAAGCTGCAAACTACAAGCAACTCTTGAAAGG
AGCAAACGAGTCAACAAAAGCATTGAATCGTGGTATAGCAGAATTCATTG
TGATGGCTGCTGATGCAGAACCCTTGGAAATCCTTTTGCATTTACCTTTG
CTGTGTGAAGATAAGAATGTACCTTACGTTTTCGTGAAGTCGAAACAAGC
TTTGGGTCGTGCCACCGGTGTCTCCCGACCAGTCATTGCATGCGCAGTCA
CCATTAACGAAGGCTCACAACTGAAAAGTCAAATCCAATCCTTACAAAAC
GCCATCGAGAAGCTTCTTCTTTAAATGGTTGACGAAGAGATAAACCCAAA
AGCTTACCCCTTGGCTGATGCTACCCTAACTGTCACTATTCTTGACTTGA
TTCAACAAGCTGCAAACTACAAGCAACTCTTGAAAGGAGCAAACGAGTCA
ACAAAAGCATTGAATCGTGGTATAGCAGAATTCATTGTGATGGCTGCTGA
TGCAGAACCCTTGGAAATCCTTTTGCATTTACCTTTGCTGTGTGAAGATA
AGAATGTACCTTACGTTTTCGTGAAGTCGAAACAAGCTTTGGGTCGTGCC
ACCGGTGTCTCCCGACCAGTCATTGCATGCGCAGTCACCATTAACGAAGG
CTCACAACTGAAAAGTCAAATCCAATCCTTACAAAACGCCATCGAGAAGC
TTCTTCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037300XLOC_037300Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059226-proteinTCONS_00059226-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059226-exon-scaffold_320-1491911889:80202..80426TCONS_00059226-exon-scaffold_320-1491911889:80202..80426Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1510915933:80202..80426TCONS_00059226-exon-scaffold_320-1510915933:80202..80426Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1575043694:80202..80426TCONS_00059226-exon-scaffold_320-1575043694:80202..80426Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1491911889:82549..82773TCONS_00059226-exon-scaffold_320-1491911889:82549..82773Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1510915933:82549..82773TCONS_00059226-exon-scaffold_320-1510915933:82549..82773Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1575043694:82549..82773TCONS_00059226-exon-scaffold_320-1575043694:82549..82773Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1491911889:83007..83278TCONS_00059226-exon-scaffold_320-1491911889:83007..83278Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1510915933:83007..83278TCONS_00059226-exon-scaffold_320-1510915933:83007..83278Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1575043694:83007..83278TCONS_00059226-exon-scaffold_320-1575043694:83007..83278Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1491911889:83809..84003TCONS_00059226-exon-scaffold_320-1491911889:83809..84003Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1510915933:83809..84003TCONS_00059226-exon-scaffold_320-1510915933:83809..84003Clytia hemisphaericaexon
TCONS_00059226-exon-scaffold_320-1575043694:83809..84003TCONS_00059226-exon-scaffold_320-1575043694:83809..84003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_320supercontigscaffold_320:80202..84003 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
146.615	152.866	154.21	163.979	126.84	148.536	107.39	109.504	229.561	245.633	188.295	215.746	183.594	211.46	197.651	225.595	258.941	213.041	42.3119	63.7773	161.489	162.431	124.876	115.484	84.5672	90.0409	76.6446	64.9416	71.6519	78.6623
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR002415H/ACA_rnp_Nhp2_euk
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
IPR004037Ribosomal_L7Ae_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005730 nucleolus
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00059226 vs. Swiss-Prot (Human)
Match: NH2L1 (NHP2-like protein 1 OS=Homo sapiens GN=SNU13 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 6.763e-53
Identity = 101/128 (78.91%), Postives = 116/128 (90.62%), Query Frame = 1 
Query:  223 MVDEEINPKAYPLADATLTVTILDLIQQAANYKQLLKGANESTKALNRGIAEFIVMAADAXXXXXXXXXXXXCEDKNVPYVFVKSKQALGRATGVSRPVIACAVTINEGSQLKSQIQSLQNAIEKLLL 606
            M + ++NPKAYPLADA LT  +LDL+QQ+ NYKQL KGANE+TK LNRGI+EFIVMAADAEPLEI+LHLPLLCEDKNVPYVFV+SKQALGRA GVSRPVIAC+VTI EGSQLK QIQS+Q +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
The following BLAST results are available for this feature:
BLAST of TCONS_00059226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NH2L16.763e-5378.91NHP2-like protein 1 OS=Homo sapiens GN=SNU13 PE=1 ... [more]
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