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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059223 ID=TCONS_00059223|Name=TCONS_00059223|organism=Clytia hemisphaerica|type=transcript|length=630bp
CTTTATTTGAATGTTTATATGTACGATGGAACTACAATTAGGAGTTCAAG
CAAAACAACATGACATCACACAATAAGAACAACAACACAATGACCAAACA
AATTTAAACACATGACAGCGAGAGACAAGCATAGACTAAACAAACATGAC
AAGTATGGACAAGCCAAGTGACAAAACCTTTACAGACAAACTAAATGACA
AATCATACAATAACTGAAATACAACTAAACGCCACGacTTAGCAACAATG
GTTACTCAAAGAGTGAAATGTACCTCTGAAGAAGAGCTCCAATATTGCGT
AAGGCTTCCTAACGTCCAGACATTTTTGAAACAGATTTTAAATGGTGAGA
TAGAGACTCAAAGATCAAACTTGTTTAACAAGGGAACGCGTGTGGATCTT
CAGTGTCAAAGCTATGGTGCTTTCACTGAAAGGCAAGTGGATGTCatcca
aaaagaaattgaaaaatcaatttacCATGATGTACCCTTTTGGACACAAT
ATTTTAGGCTTCCTTTTTTATTGGAAGTGATTTTGCCAGAATGTCTGGAG
ATCATTGTCGCAGAGATATGTGAGAATGTGTCAAGGGATCAagcttcatt
ttattttaaaaattatagatagaaagaaat Run BLAST on NCBI protein sequence of TCONS_00059223-protein >TCONS_00059223-protein ID=TCONS_00059223-protein|Name=TCONS_00059223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MVTQRVKCTSEEELQYCVRLPNVQTFLKQILNGEIETQRSNLFNKGTRVD
LQCQSYGAFTERQVDVIQKEIEKSIYHDVPFWTQYFRLPFLLEVILPECL
EIIVAEICENVSRDQASFYFKNYR Run BLAST on NCBI transcript from alignment at scaffold_32:76762..79819- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059223 ID=TCONS_00059223|Name=TCONS_00059223|organism=Clytia hemisphaerica|type=transcript|length=3058bp|location=Sequence derived from alignment at scaffold_32:76762..79819- (Clytia hemisphaerica)
CTTTATTTGAATGTTTATATGTACGATGGAACTACAATTAGGAGTTCAAG
GTATTTTTTGTGCTAATACATTTTAATTTTTGAGCTATTCATTTCTGAGA
GCTAACATTGAGGTATAAATAAATTGTGAGTAGTATCGATATTACAATCA
TAATCGATCAACAATCAACCATCAATTTATTTACTTATTTTCTTGTTGAT
TTGATTCAATGTAATTTCATCCAAGATATCTCAAACTTTCTCGAAGAATT
CCTTCAGCTCACAGTGTGACCCCCCCTTTATAAAGTATATTTTTCCAGGG
GCGGGTAGGGACATTTCTCAAAAAGGGGGGATTTTCAAAAAGGTGAAAGG
GTAAAGAATCCTCTGCACACTATGAAGCTACTCCTTGGAGCTTGTTATTT
TGGATCAATCGAATCAATTGAATCTATACCGTCAACCGGGGTTACTTTCA
TATGTTTGGGGTAACTTTCATCAACTACTCCAAACAGCAGATTTTTCTGG
TCTGCAATTTTCCAAAGTAAAGAAAAGCAACACATGACTTACAATGAGTT
GTTTACATTCTATCTACATTCAAGTAAAAATTACAGACCAGAAAAATCTG
CTGTTTGGAGTTGATGAAAGTTACCCCGAACATATGAAAGTAACCCCGGT
TGACGGTATATTAGGGATGAGATTTATTCAAGTCAATCGAATATCAATCG
AATTCAATCAAATTAATAAAAAAATGTAAAATTCGATTGGCATTCGATCA
ATTCGGCCAATCAAATTTTAATCATTCCATTGACGCTCGATGGATTCTCA
ATTGATTCACCAAAGAAAATTAGATTGGAATCGCCTTGTCCATCAATATA
CCATAAGTTGGTCTAATCTCGTCAGTATCATTTCAAACTGGTCAAAACAT
ATTCACAATATCTTTGCATGAATATCATGGAAAATGACTTGATTTGATAA
TGGTTTGTTTGAATGTATTTTAAGCTATGGCTACACCTGTGTTTTTTTCG
TGCAACATGCTGCACAAAATGTTCCCCTAGATGATTTATTCATACTGCAA
TTCCCCCCTTATAGACATATATAGAGGGAGCTAATTTATTATTTATTATT
TCCATACATTTAAGTTCTAAAACAATAGAAAAATAAACAAGAAGAAAAAA
TGTCTCAAATTTTATTCCACGAGCTGTGCAACAAAACAGATTCAACCTAT
TTTGATGCATGAGCTTGGTGCAGTTCTCCCCTTTTTTGCTGTGTTGCAGA
GAAGATTGCAAAAAATGTAGAGGCTACATTTGCAACTTTTTCATGGGGGT
ACAATGCAGCACATGTTGTGTAGCATGTTGCATGAAAATAAACCCAGGTG
TAGCCATAGCTTTATTTTTTAAAACCTTTGGGTGCGTGGGAGTCGTCTTG
ACCATTTTGATTTACTTATTACTTGTTGTTGTAATTGGTTAATTGAGTCC
TTTTATGATGTAATCAATAAGATTTTACGCCAAAATAAAAAACACACCCA
ATGACAAAAGAGAGTAGCGGAGTAAATCAAAAGGGTTACTTCGTTTACGA
AAAGGTCTATTTAAAAGTTTTACATTCAAACAAACCTTTCTCAAGTCATT
TTCCACGAAAAAATATTGCAAATTTGTTTTGACAGACCAGAAGGTTACTT
ATGATAAGTTTGAAACTGCACTGACATAATTAGACCAACTCAGGGTTGGA
TAATCATTTCAAATGTTTTTCTAATTTTTATTTTTCTTAATAGCAAAACA
ACATGACATCACACAATAAGAACAACAACACAATGACCAAACAAATTTAA
ACACATGACAGCGAGAGACAAGCATAGACTAAACAAACATGACAAGTATG
GACAAGCCAAGTGACAAAACCTTTACAGACAAACTAAATGACAAATCATA
CAATAACTGAAATACAACTAAACGCCACGGTGTGTAACTATTACACTAAG
CATTACATTGGTCTGCCATGGCTCCGACTGGGGTTCTAGGTCCCCCCGCC
AAATTTAGGTCCCCCCTAGGATGTACGTCCCCCCACCTTCAGAATGTTTC
AGGTCCCAGTTCCTTATTAAAACAATTATCTTCAACTTAAGAGCCCTCAC
AAAGGGGATTAAATATTACCAGAACTCTGTTTTATGACAAACACTTCGAT
AGTATTACTTCGCAAAAGAAATATTAAGGATAAGTAGTTTGTTGAAGGCG
CCGCAGGCAAAATTATTTTAAATTTAAAATTTTTTAAAAAGGCAATCTTA
AGTTCTTTACAAGGCGGTTCTATACAAAGAATAAGTTTAGGTCCCTGAAC
TTTTGTATTAAACCTTGGGTCCCCCCTAGACATAAGGTTCTCCGTTTTTG
CCAAATTACTCCGTTTTCCATACTCCGTTTTTGCCAAATTTCAGGTGTTG
CTCCCCCTGCATAGGCAGAGGGGTGCGAGCCATAGGTCTAATCTTGTCAT
CATAGCAACAACAAAAGCAATTGAATGTTTTACTTTTAAATCACAGCCCA
AACGACTTTAAAAAGGCACTGACAAGATTAGACTAACTCACTGTACATGT
TTAATTTCAAAAATATAAAACCCAATCAAATGAATACTGAATGTAGTAGA
TGATCAAGAGCATCTACATTGTGATTGAAGAAATAATTTTAAGATAACTT
TTATTTTTATTTAGACTTAGCAACAATGGTTACTCAAAGAGTGAAATGTA
CCTCTGAAGAAGAGCTCCAATATTGCGTAAGGCTTCCTAACGTCCAGACA
TTTTTGAAACAGATTTTAAATGGTGAGATAGAGACTCAAAGATCAAACTT
GTTTAACAAGGGAACGCGTGTGGATCTTCAGTGTCAAAGCTATGGTGCTT
TCACTGAAAGGCAAGTGGATGTCATCCAAAAAGAAATTGAAAAATCAATT
TACCATGATGTACCCTTTTGGACACAATATTTTAGGCTTCCTTTTTTATT
GGAAGTGATTTTGCCAGAATGTCTGGAGATCATTGTCGCAGAGATATGTG
AGAATGTGTCAAGGGATCAAGCTTCATTTTATTTTAAAAATTATAGATAG
AAAGAAAT Coding sequence (CDS) from alignment at scaffold_32:76762..79819- >TCONS_00059223 ID=TCONS_00059223|Name=TCONS_00059223|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_32:76762..79819- (Clytia hemisphaerica)
ATGGTTACTCAAAGAGTGAAATGTACCTCTGAAGAAGAGCTCCAATATTG
CGTAAGGCTTCCTAACGTCCAGACATTTTTGAAACAGATTTTAAATGGTG
AGATAGAGACTCAAAGATCAAACTTGTTTAACAAGGGAACGCGTGTGGAT
CTTCAGTGTCAAAGCTATGGTGCTTTCACTGAAAGGCAAGTGGATGTCAT
CCAAAAAGAAATTGAAAAATCAATTTACCATGATGTACCCTTTTGGACAC
AATATTTTAGGCTTCCTTTTTTATTGGAAGTGATTTTGCCAGAATGTCTG
GAGATCATTGTCGCAGAGATATGTGAGAATGTGTCAAGGGATCAAGCTTC
ATTTTATTTTAAAAATTATAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059223-exon-scaffold_32-1575043694:79770..79819 | TCONS_00059223-exon-scaffold_32-1575043694:79770..79819 | Clytia hemisphaerica | exon |
| TCONS_00059223-exon-scaffold_32-1575043694:77891..78076 | TCONS_00059223-exon-scaffold_32-1575043694:77891..78076 | Clytia hemisphaerica | exon |
| TCONS_00059223-exon-scaffold_32-1575043694:76762..77155 | TCONS_00059223-exon-scaffold_32-1575043694:76762..77155 | Clytia hemisphaerica | exon |
| TCONS_00059223-exon-scaffold_32-1510915933:79770..79819 | TCONS_00059223-exon-scaffold_32-1510915933:79770..79819 | Clytia hemisphaerica | exon |
| TCONS_00059223-exon-scaffold_32-1510915933:77891..78076 | TCONS_00059223-exon-scaffold_32-1510915933:77891..78076 | Clytia hemisphaerica | exon |
| TCONS_00059223-exon-scaffold_32-1510915933:76762..77155 | TCONS_00059223-exon-scaffold_32-1510915933:76762..77155 | Clytia hemisphaerica | exon |
| TCONS_00059223-exon-scaffold_32-1491911889:79770..79819 | TCONS_00059223-exon-scaffold_32-1491911889:79770..79819 | Clytia hemisphaerica | exon |
| TCONS_00059223-exon-scaffold_32-1491911889:77891..78076 | TCONS_00059223-exon-scaffold_32-1491911889:77891..78076 | Clytia hemisphaerica | exon |
| TCONS_00059223-exon-scaffold_32-1491911889:76762..77155 | TCONS_00059223-exon-scaffold_32-1491911889:76762..77155 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_32 | supercontig | scaffold_32:76762..79819 - |
Blast
The following BLAST results are available for this feature:
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