Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059220 ID=TCONS_00059220|Name=TCONS_00059220|organism=Clytia hemisphaerica|type=transcript|length=2348bpRun BLAST on NCBI transcript from alignment at scaffold_32:19616..27322+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059220 ID=TCONS_00059220|Name=TCONS_00059220|organism=Clytia hemisphaerica|type=transcript|length=7707bp|location=Sequence derived from alignment at scaffold_32:19616..27322+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00059220 vs. Swiss-Prot (Human)
Match: SPF45 (Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.108e-43 Identity = 118/264 (44.70%), Postives = 151/264 (57.20%), Query Frame = 2 Query: 869 GRAAIAPPPSLLETT--------------------------PVNAEIIQKKENSAGTGGF--STGNLIASQIMAKYGWKXXXXXXXXXXXXSTCLQVEKTGKRAGKIINKDVEKAKEKDXXXXXXXXXXXXXXXMGGAMGGVPNSPSQPQPPDVSGNDSQMADLMKNPSKVVLLKNMVGPGEVDDELQPEIEEECTTKYGDIIKVIIFEIPNAQEEEAVRIFVEFKRMESAIKALMDLNNRFFGGRSVSASFYNVDKFRRLDLA 1576 G AAIAPP SL+E PV E + + + + F + G +A +IM KYG++EGQGLG+ EQGLST L VEKT KR GKII D A EKD+ S S P + +++K P+KVVLL+NMVG GEVD++L+ E +EEC KYG + K +IFEIP A ++EAVRIF+EF+R+ESAIKA++DLN R+FGGR V A FYN+DKFR LDLA Sbjct: 171 GGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGD---ATEKDASK---------------------KSDSNP-----------LTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 398 The following BLAST results are available for this feature:
BLAST of TCONS_00059220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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