XLOC_037296 (gene) - C. hemisphaerica

Overview
NameXLOC_037296
Unique NameXLOC_037296
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_32:17975..27322+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037296 ID=XLOC_037296|Name=XLOC_037296|organism=Clytia hemisphaerica|type=gene|length=9348bp|location=Sequence derived from alignment at scaffold_32:17975..27322+ (Clytia hemisphaerica)
TTGATTGCTATTGTGGTACCGTACATGCTACCCGtgggaaagaaaaaaag tgaaagaaattgAAGACAGTTTTGATGGTGtgatattttattatatttat tatacaTGTTGCCGCAATCTTAATACGGTAACACCCAGCGTTGGAAGCta tttctattgtttgagaTTGATTATTTCATAGCATTTCACTGCTTCTGTGA TTGAGCGATATTTGGGATAAAAAGTGTTCTGATTTTCAGATACTTTTGGA GGAATTATATAATTTGGATCCTATATGAAAAAAGGCAAAGTAACaatctt tgttttattttttaaaagttgtATATAAAGAAAATCTATTTAAACAAAAA TACGAGAAATGGATTTATTTGGTGATTTACCACCTCCATCCACAAATAGC GTAAAAGAAGATGAAGCGAATAAAGTTGAAAAAAGAAAGTCAATTGACAC ACTAACAAATGAAGTCACAAgtccaaagaaatcaaaatcagatgaagaag aaaaattcaaagcCTCACCAGACAAAGAGCCCACGTTTCTATTATGCTCC TATTTAACAGAGCGCCAAGGAGAACGAGATGGAATGGAAGACAACACTAT CATATTAGATGATTGCACAAAGGACATTTTCCCGCTGGTTGAGAAATCAT TACCAAATTGTGATTCTGAAAAGCGGGCAGCTTTTATTGGTGTTTTTGAT GGTCATGGAGGGAATAAGGCATCAttatatgcaaaaaatcatctttttaa GAATATTATGGAAAGAATTCCTAAAGAAACAGTTAAAAACTTTGATCGGG AGCTCAAGATAAGTTTGATACAGGCTTACAAGGATACTGACGAAGGTTTT ATTAAGGAGGCTTATAAGGTATCTCCACCTTTGAAAGACGGTTCAACAGC TTCATGTATTTTGCAAATCAATCATACCCTGTATGTATCCAACATAGGTG ACAGTAAGGCCATATTAGTGCGTAGTTCCTATGAAGGAAAACGTAGAATT ATACCACTGACTAGAGATCACTCACCGACAGATTATGAAGAACGACAACG CATTCAAAATGCTGGTGGTGTTGTACGTGATGGTCGAGTTAAAGGAATTT TAGAAGTCTCCAGAGCTTTTGGTGATGCACGATTTAAAAAGTATGTTATA TGTACGCCAAACGTATTAAAATGCACTTTGATTAAAGATGACGCTTACAT GATCCTAGCATGTGATGGCCTTTGGAAAGCCTTCAATCCACAAGAGGCTG TTGATTttgttgataaaattttagaatCAGACAAGGGTGATTCAACTGAA CGGTTTCAACAGGCTAGCCGTGAACTGTGCAATGAAGCTGTGCGGAAATG TAGTGGTGATAATGTGTCAGTTATAATTATTAGCATAAATGAATGAATAT GAATTGGCTTGTTTTTCTATTatgattttctttattattgTAGCTATTTC TGtggtttttatgttttttattagACTTCTCACtagaaaaaattggaaag tttCTATAGAAATATCAGATATAGCAATCCAATTCTTTACTGGTTTCACC TTGTTGTGGTTTCCCAGAATTCatttaatttatcttttttcacacttttt tcacCTAAAAAAGTTATTACATCCAGTCATTTTATTCATCCTTtagatca aaaacaaaaaactaaaattagaTAACAATAAATATAAAATCTTTGGATCA AAATGGCGTTAGCTTCACTTTATGATGGAGTTGACCTTGgcaaagacaaa gaaaaaagtgCCAATTTAAACCCAACCAAAATTGGTAagcataaaatatt ttttcaatgtaGTTTTTCTTTCGGTCCTTTTTTTGTTGTAATATTGACTG CTGGGGGttgatcaaataagagcttgtaaaaactccagcttgtcccggtC ATGTCACTCTTTGacaatttcacagaattttcaaaaatcttacacTAAAC TTGTTTGGATCTGTTTGGACTGTACTACCCTTTTATCTCGAACAAAATAT TTGATCTTTTAAAAGTTCGAGATAGAGAGGGTACATTACTTTTTNAAAAA GTGCCAATTTAAACCCAACCAAAATTGGtaagcttaaaatattttttcaa tgtaGTTTTTCTTTCGGTCCTTTTTTTGTTGTAATATTGACTGCTGGGGG GGttgatcaaataagagcttgtaaaaactccagcttgtcccggtCATGTC ACTCTTTGacaatttcacagaattttcaaaaatcttgcaCTAAACTTGTT TGGATCTGTTTGGACTGTACTACCCTTTTATCTGGAACAAAATATTTGAT CTTTTAAAAGTTGGAGATAGAGAGggtttactttctttttcttttttttc acttttcacttCTTTGCATTTTAGCTGGTTGGTCAGACAATCTTCAATTC ATGAAAACACAACTACAGTTAAAGAAGGCATCCACTTCTAAAGGAATCGT AAGAATCCTTTTATTTTGGtcccggggggagggggcactcgatttctaaa cggcggtatgtgccgccaaaaaatgCAGCTTTTCAACATTGAAAAGGcac ccttacaatgcattttACCAAACTtctcacccttacagtgtagtttgatt tcatatctaATTTTGCTGAAGCCATTTGAAAATGAGCCTGAGCTGTCGAC ATAAtttgcaaaacaaatcaaaatgagtgCGAGTCGAAACTATAAATATA CATCAGTTTTTTACTATCAGACTTGCAATTCAGTAGTTCctaaacacacc cttacagtatAACAGCTCAAAaaagacccttgtagtgcatTTGAGGGTct caaaaaacctacccttacgggcggcacatgccgtaagtcggaccatatga gtgcacACCCCCATGGGTTTTTGGTTCAAACATTGTTATATGTTTCTTGA TCATTtagaccacgttcacacgcCACGGTTCTGTTTCGCTCCGAATCGAA AAGaaccattctattggttaaatctATTgcttacgtcacttctaaccagt ACAATAGCTTTATTTCTTTTCGGAGCGAACTGAACATCGTCATAAACTTA CTGGTTTTTTCAATGTCTCGTCCTGTTCATATTGATAGATgaattatttc taaattttgcaaacgtttttttttctctttttagaaaGGTGGAAAATCAG TTTTATCCACAGGGCCTGGTAATATAACTTTAGTAAGTATCCTTCGTTGT CGCATTTTGGCGAAGGACCAGTATTGGTACTGGTAAAAGTTAAACCATTG TGATATTGTGATAAAGTAGATTTTTTGCNTTGGTACTGGTAAAAGTTAAA CCTTTGTGATATTGTGATAAAGTATATTTTTTGTTACTCAAACCTCCATA TCTCAAATGTTTTGTGGTCCTTCAAGCTATATTACTCTGAACTTATTCCT CTTAACCATATGGTCATGTAAAAGAAAACCTGACACAGTAAACAATTCAT TACTAGACAAGAAACTACTACTAAGTGCATTTTTTGCCTCCCATTAACCT AAAGATCCCCTACAAGCCAGACTGTTTACAGTGAGTTACGTTGAGATACA GCCACCAAACTCTAAAATAAGGAGTGGAATGTACATCAGCAAATCTAATA ACCAATTTCATCCCTCAAGTTACCATTTTGAGACATACGCTATCTTATCC GCAGCTTAAGTTTTCGAGTTATAAAAGAGGGGTCATTTTTATTacgtttt ttttatcttttcagtcTTCAATAATGGCACCGGCAGACAAACAAGTTGTT TTGATCGATGAGTACAATCCATTACGACCGAATGATTATAACGACTTCAA GGTTAATAAATTTAATGTCCGTCAAAGTGTTTCTTCTATCATTTAGTATG ATCCAGGTCCATAACAATCACTGTACCATactgaaaatgttttcttttac aaactcgaaaaatgaaaagaaaaagatttaaatTCTTGAATTAGACCAGT GTCCTAGATTCAtaaaaggccttaaaacaggttttcgtaGAGCActcctt agatcagggcaaaattttgatattatgctcctataGGGTGTggagttaat cgatagaacttatcaagagTCCCCCtttacaaaatgtttttttcgagGTC CGAAAATTAAATATCTGATGCttccaacggattcagcgtgaaaagtagat aaagaaaaatggggttatttgttaagtttcgaccacttGGTGCcaagaaa tggcatttttaaggcgaaaaatcgatgtttttggcgttttccgatgatgt cagcattttcagaaaaaatatctCCCATAGCTAGATAGCCCtgaatttaa aaatgttatggtttgttaactttcgatgttccgatctcgagatatttgct ctaaatattgaaaaaaagaaaagaagagaaaagttttttagcatatttac ccaccttaacaatgaaatatctcgagatctagacactAGACCTAGAAACT TAAGgctcaatctcaaaattagtaccttacaaaatttaaaattttactgt GGTGTTCACAGTTCTGTTTTGTCATACAGAGGAATACTCAATGTTTTCCt atgacaaaaaggccaatcttAAAAACAGAAAGAttgaaagattttcaatt ttccaaggcACTTATTTAGAGATTGAAGTTTTAGTCATGTGAACGACGAT GTATGATTATCTAAACTAGATAATTGTTGGTACAGATTGATTTCGAAGAC aatcattttttaatattttgctaggttttattctaatttttatttatgCA ATTCACTGTAGCTTGGATAACGACGCTCATTGAGAAATGAAATAACTAAA GGCTTAAGCTTAAAGAATTTATTTAAGAAATTATTTTAAGCCTATGAGTT CCTTATAAATAGGTGAAGATCTCTCAGAATATCCCAGAGTTAGACCTCCC AAAAATAAGTAATAGGTATTTTAGGTTTTACCTGACGAACctatttcttg aaaaatatagaaatttgGAAATTGACCGTATAAAAACGTCAGACTTTCGA AAATGTCTTGTAAAACCTATGTCTCTGTGTTTAAGATAAATCTTATGTTT TTATAGTTACAGCTGAATTGgttctaatacacctttttacgGTTAGCTGC TTtgtataaaaagtcaccaaaatttcgagtaagcaaaccatctcattggc taaaagcaaaaaaaacataaacaaaaaaatgtccagagtaagagcacaga aagcacatttttctctaggctacgtcatatcctccttcgtttcgagcgta aaactcctactcttcgggatatgcgcactgctcttgttttgaatattgaa tctCTCCGGATatatcgcatgcgcactgaggttttaatgaaacaatagag agtttcgaaacgtAGGCCAATCAGCTgtattttaaacattcttttatttg aaatctctattgataaacatcttttgttaaAGTTTGCTATTATGTTTAAG CTTATTAATAAGCAAAATCTACTAGTCTAACTAGTGGCCGCcaatagcag tgcctatagaccaagagtaaggcctaaaagcctggagctgtctattgtgt agactaattTTTCTCATACTCTGCAATCTCTCACAATCTTAACAATTGCA TCTCGAGAGTTTACATTTCATTCTAGGTACGCATGCGGGAAAAAGAGGAA CGTGAAAGACGGGATAAAGAACGGCGACGGGAACGGGAAGAACGTGAACG GGAACGCGAACGACGTGATAATAAAGACGGCAATGACAATCGACGTGATG AACGGTTAACACTCatcataaaaattgaattgcACTTTCTCTCGCTTGTA TCCATTCTTCTTATCTTACTCTTGTCACTTACTCCTAACCTCTTGTAGTC TCTTCCATTCTTCACTTAATCTCTTGAAGTCTCTAGTAATCAtacttttt catttcatctgctTTTTTTAAGTTTCTGATAATCCTTGAGTATATACTTG TTGATATAtatcaacaaaatgtttttcGTACACTTTTGAATTGCATTTTC TTGCTCTTCTTCTCTAAATTTCCTCCAAATTTCCTCAACTTTTTCTATTA GGAGACGAAGTCCGCATCGTGATGATCAAGACAAAGATCGTGATCGTGAC CGGAAACGAAGACGCGATGACGATCGTAGTAGAGGTTTGATTCTTATTTG TCAATGTTGtttgaattgtttttctttgaattttaaatCAACGCATTTAT ATGTGTGAAAAACTCTTGTCAGTCTTATATTATCGCAATATTATTCTGTT CATTAGATTACGGAGGGCGTGCAGCAATCGCACCTCCGCCCTCATTACTA GAAACGACGCCTGTGAATGCGGAAATCATCCAAAAGAAGGAAAACAGTGC CGGAACAGGTGGCTTTTCTACAGGGTATGTATGAACATGATTGGTTATTA TATTTGAATTCCCGAATTCTCCCGTTTACCTGCGGTTTTTACTTTATAGA CAATATGTGTTTCTATCGGAGTCTTAGTTTGTAAGTCTTGTATTTGTAAG TCTTTTGGCTTGACGCAGATAGACATAAAACTAACTTTGTCGCAACCATG ATTAACCCATTCCCAGAGCAACTTGACTACTCTTTATATCACTGACGGTT CTTCCTGCAACCTTATCTTTACAGAAATCTTATCGCGTCTCAAATCATGG CGAAATACGGTTGGAAAGAAGGTCAAGGTTTAGGTCGTGAAGAACAAGGT CTATCCACCTGTTTACAAGTCGAGAAAACTGGTAAAAGGGCGGGCAAAAT CATCAACAAAGACGTTGAAAAGGCCAAAGAGAAAGATTCGTTCCCTCCGC CTTCTTTCCCACCACCCTCCTTTCCTCCACCCATGGGCGGTGCCATGGGT GGTGTACCGAATTCACCTTCACAGCCACAACCACCGGACGTTTCTGGTAA TGACTCACAGATGGCGGATCTAATGAAGAACCCATCGAAAGTCGTCCTTT TGAAGGTTAGTCATTGTTTTATCCTACCTATTACACGATACATAATAATT AGAACAAATGAGAAAAAGCCCTCTTGATTAAATAAAGCCTGGTGTCAAAG TAAAGAAAACAAGTAATTCGTGttagtttgaaatattttaaaaaagatct aaaactgtttcataaaaaatatttgtcgACAATAATAAatctttattatt tattttaaaagatctaaaactatttcaTAAAAGATATTCGTCCACAATAA TAAatcttaagcaaaaaaaatgtatccAAAAGGGATTTATCGTCACTTTT TGTCGACGAATGTTTCACCGATAAGCTAATAAACCATTTCAAACCATTTC AAAATAGGCAAGGTGTCTTGTCTGGTTTACAGGCGaacgccggattgaaa ataaaaatttataggAATAATGGAAACTTTGTCACGCGAAAGAAATACAG CGCCAGAGTTAGTACACTGTCCCCAATTGCGTTTTCACGTTTTCTTGCTT TGAAAAAGGCTGAAGATTTCTAACTTTAAGCTCGATAACTTtattcactt tcgatttcattgCTTTTCCACAGAACATGGTTGGTCCTGGTGAAGTAGAT GACGAATTACAGCCGGAGATTGAGGAAGAATGTACCACAAAATACGGTGA TATCATCAAAGTCATCATTTTCGAGGTACTAAAATATCTTTGCCGACCAC CGTATTTGATGACGTGattaatttttgagaacaattttaatattttttga atctgAAGATACCCAAAActtgttaactttttttttctttcttaaaaacc TGATTTTAACTCAACTTAGCAGTCCCTGATCATTCCTATTAGAAACTGTC CAAGATTTTATTGATTAAATCTTTAAAGCCTAATTTTAACCTTCATTTTT TCACTATGTTCGCCTTTGAGCCAACTCATTCGGTATAAAAAGGCTAAATT TTAGTTATATTTTTGTCTTGAAGATCCCCAATGCACAAGAAGAAGAGGCT GTTCGTATTTTTGTCGAATTCAAAAGAATGGAATCTGCCATTAAAGGTAT TGTTAAAAGATTTAATCTTTTTAATCAATTTAGCCCTAAAAACATGTTAC CCAACGAGTCAGATTTGCCGTCTAAGGAAGTTGGTTCgttgtaattaatt ttttccttgGACGGCCTCTTGCACACACATTTATTCCACATACTTTTATT tgctggaagaaaattttagtcCTTTAGGTCAGCCTTGTTTTGTTATGTTT CATCAATTTGCTCCCTTGTTTCAAGTCCCTGTTATTTGTAATGGGTAATC ATGACTGCGCACAAATAAACgcttcttttttatcaatagaTTAGGAATTC TTCATTAGTGTGTGATCAGTCTTATCAGCTCTGCAGAAATGAAAGTCATC CCATCCTTTCAAAGTTCGTCTCAAAATTATGTTGACACTCAACTTTTTCA TGGAAAGATATTTACGAGGAGAATATTCTAAGGGataaaattaagataaa aaaataattttgttttctttgttttctatttcAGCTTTGATGGATTTGAA CAATCGGTTTTTCGGCGGACGATCCGTCTCTGCATCCTTCTACAATGTCG ATAAATTCCGAAGGCTCGATCTAGCAAGTTGAATGAACAAAATAAGTGTA CATCTAGGTATCATTCACAACCAGGAAATACAGACAACGCTCTGAAAAAT GGTGAACTGTTGAAGAACGAgtaaaaagtcaaattaaaaTAAGCAACATC AGAAATTATGAACTCGTGATCAACTAACTATCAATATCAAATTTGGGAGA TTTTGACACTTTCTTCTGACGTTACATTAAATCTTTCTATGAAAGCAGAA GTCGGAAATACGCTATGTCGATTATGGATGATGTAGAGTTCATTGCAAAT GCCGTAGATTCATCTAAAATATTACGATACAATGATCGACAATTATGAAC ATTAGATTGAGAACTAGAGAAGTTATTGCTCTACCAATGGTACTGTCGTT TCTGTAAAGATTCTACTTCCAAAGCTAAAATTGCACTGGTTTTTTATGTT TCTAATTATTTTTCCAGGCTTACTGGCTGAAAATAGAAAGGGTTTGCTTC CAGAGCTATGCGAAATAGCATGAGACTGACCAATATTCTGATCTGAAGCT ACTTTTCCCTATCATGCTATTATTAAAGAGTCAAAACAGATGTGTATCTC CGTTAAGTGTCCCGATCAGTAGAATCTCAGTTCAAGAAGTGAAATCTTAG CCGAAATGGTATGTTCTCAAGAAACCTTGTAAATTTTGTAATTGATTTTT GCACAATAAAGAAATTGTTATAAATGGACTATGATGATTTGAAGTCTTTG TATCTCATCAACCATCTTTATCAAAGAATACTCTTGCTTTATTATTAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00059219TCONS_00059219Clytia hemisphaericatranscript
TCONS_00059220TCONS_00059220Clytia hemisphaericatranscript
TCONS_00059221TCONS_00059221Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00059219-proteinTCONS_00059219-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:17975..27322 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
RBM17splicing factor 45 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.52 38.02 19.85 17.63 46.76 35.43 39.3 40.43 30.24 28.07 20.64 20.32 18.1 17.87 17.16 17.55 32.82 28.72 13.9 15.94 24.54 26.12 39.1 36.33 22.1 25.95 10.35 8.75 22.89 25.5