|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059197 ID=TCONS_00059197|Name=TCONS_00059197|organism=Clytia hemisphaerica|type=transcript|length=1044bp
CGTTTCTTCATAACATAACTGTGAAGTGAAGAAGAAAGGTCTGAAAGCCA
ACTAACTAAAAACACataaattcaaaatggcagcAAGACCAAAGGGTTAC
GGATTAACTGCTGAAGTCAGAGGAAAAATTGATGGCAAATATGATGGCGA
ATTAGCACAACAAGCCATGCAATTCATTGAACATTACGTTCCTGACTCCA
ACGTTTCTGGAAACAGTACATCAGATGCAGTTGCCGAAAAACTGAAAGAC
GGGGTCGTTTTATGTAAACTCATCAATGCTATCGAACCTGGGTCCATTAA
AAAATTCAACGAAtcaaaaatggcttttaaacAGATGGAAAACATCGGAA
AGTTCTTAGACGCTATCGACCAGTACGGTGTTGCGAAATCAGATAGTTTC
CAAACAGTCGATCTTTATGAGAAACAAAACATGCCAGCTGTCATCAATGC
TATCCACGCTTTAGGACGAAAAGCACAAGGTAAAGGGCGTTATGGCATCG
GCCCAAAAGAGTCGcaagccaacaaacgggaatTTANTCTAAAGGGTGTT
ATGGTATCGGCCCAAAAGAGTCGcaagccaacaaacgggaatTTACTGAA
GAGCAAATGCGTGCTGGTTCAAATGTTATCGGACTTCAAATGGGTTCCAA
TAAAGGAGCGTCTCAGGCTGGTCAAAACTTTGGTAAAACTAGATCTATCA
TGGATTAAGTTGGTGATTTATTTGGCAATGAACAAGTTTATCTGTCACTT
TTTGCATTTGTAACCATGCTGGACTTTTTTTCGAAGACTTTTTCAATTAA
TATTTTCGAGATACGTTTTGAAGGGTATTATGGGTATTGAAATCAGTATA
CGAGCACTGGGTACGATTCTTATTGTTTAGTATTATACAGAGGTAGGAAA
ATCTATTTGATGTTTATTTTAGAATATTTAAAGACTATCAAAAACCCTGA
CGTGTGATGAATTATTACCATGGTTTTCATGTCCCTAAGGGCTTCAATGG
TTAAAATACCCAGagcaagttaaaaacattttaagactttgtgg Run BLAST on NCBI transcript from alignment at scaffold_319:322315..329514- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059197 ID=TCONS_00059197|Name=TCONS_00059197|organism=Clytia hemisphaerica|type=transcript|length=7200bp|location=Sequence derived from alignment at scaffold_319:322315..329514- (Clytia hemisphaerica)
CGTTTCTTCATAACATAACTGTGAAGTGAAGAAGAAAGGTCTGAAAGGTG
TGTGTTTTGAAGACTAACGTGGTTTCTTCGTTTTTAAAATGTTAAGCTGA
GTTTGTCGCTTTTTTTTTGGGAGTTTGTAGTACTTCGTATGAAGATGGGT
TGGGTCCGAGGAGTCAGTATCAACCGGTATTCAGGTATCGTATCGAAGTT
TTTCCGGTTTCGAACAGAAAAGCAAGTCTCACGGCCATCATTCCGGTATT
TCAGATAATCTCTGGAATCTCGAGAAAATTGGCCGCTATTCCGGTATTCC
AACTGTAAGTAGGGTAGTTTCCGGTGTCCGGTATCGAGTATCTTTTCACT
GGATTATATTTCTGAAATTCAGGTATTATACAGTCAGGAACTATTGCAAA
TTAGGCTATGTTCGTCGATTCTGGCCTAACTTGGATACGATGGCTTAATT
AAGCCAGAAATTGTAGCCTAATTAGGCTGGAAGGAACAAAATTCCAATTT
TTGACTTGGATTTCAAANGGATATAAATTCTAGCCTAATTAGTCGAACAT
CCTAGTTTGGCCATCATAGCCTAATTTGCAATAGTTCCTGACTGTTATAA
GAAGCCAATCAATAAAAATACACTTATAATATATGGTCAATAGGTCTATG
GAAATCCAGGTAGTAATACCTGCACGAGGTTTGGACTGACATACATTCTA
GTCAAATTATTTCATCTTAGATTCAGACTTTCTGATTGAAGGTGACTCAT
GAAGAAATTCTACTTAAATTCCTAGACCGACGCTCATAAAAGATCCAAGA
AAATTATTCCAATTTTGTTTAATAATATTTCTTTCATATTTTCCTTGNGT
AATCCAAACTTTGCTTTAGAAACATGTTTTATCTATCTATTTTTTATCTT
CGTAATAATCTTGTTTTGTACACTTTTAGATTTTATGAACAACCTCAGCT
ATAATATATAAAAAAACGTAAAAAAGACCTTCCTCAATTTAAATATTTAA
TCAATCTATCAAGTGTAAATTTAATATCTTAATAACNCAATTCTTTCAAA
TTTTCCTTGTCTGTGGTTTCGCTTCAAAGGAGATGAAAGGAAAAGCTTAT
CAGTTTTTATATAAACTTTCGTATAGTAATCTATTTCCAAAAGTTTTTCA
ACACTTTATCAAAAAAAGATATTTCGGGTGTTTTTATCTGGCTTACATCC
CTATTGTCTGAATCTTGTAATCTTAGTTCAGCCACATTTTACTTTCGAGG
AATTTTTTATAAGCAATTTAGATATCACTGATCTTGCAAGAAAGTTGGTG
TTGGATGTTTACATGATTTACAAATGGGTGCATATTTCAAGCTAAAGAGG
ACGAGATAAAGTAGACTAATAAAGGTTGGGGGGGGGGGGGGGGAAACCGG
CTACCCATATTTTATTGTTTACAACTCAAAGATTTATTGGGGTTTCTTAA
GAATAGATTTGTATGATATTTGTCTTATATATGGAGCACGGATGCCCTCG
TGGATGCCACTCGTGGGTTTTGTTTTCCTCAACCGAGATTGATTTCCGCT
TATTTTCTCTCCAATAAATTACGGTAAGCCATAACTGCTGTTTTATGGAA
CAGCTGCAATTAAGACCAGACCAGTATAAGGAATGTCTATAGCAATCAAT
GTTCTTATAAAAAAATGGGACATAATACTTCTCACACCACAACAGGGGTC
TGGGGTCAATCTTTATCAAATTCCAAAACTTTTTTTTTTGTCACCGTTAT
TTTGGAATTTTTGACAATCATGATGATCTTTTTATGAATCTTTACGCGTG
CTGCTGTTGTAAATGGAGGACGATATTTTCGGAGAAGGTTTTTCAATCAT
TCGATCAATCGTTGATGACTCGACATTTTAACGATGATAGTTTGATTGTT
CGTTAATGAATCGTGGGAAAATGATGGCATTTGATTTTTAAAGAGAACAA
AGGGCATCATTAGCGACTTTATCTATCTATATTTTTCTGCAATGGAGACG
GTGAGCTTCTAAATCCTGATTGACTGAGCACTACAGTAGATCAACACTCT
TACCGTCCTCGATTTTGTGGGTCAGAACTGCGGCTTTTTCCAAATAGCTT
CAGCCACTCCGCCGCCTTCAAAAAATTGCAAATACTAAACTCGCTGTTAA
AAACGAGCTGAGCCGTACCGCTGATTTAGTCCAGAAATATCACCAAGATG
GCTAAAAGGCTAAAAAGAGTAAGTAGGCACTAACATTGACGACCAACAAG
GACATGCCATAAGCCACTGGAAGAACTCTTCCTTTCTATTTATTTCCTTA
GTATCTCCTTTCTTCGAATGTTTACACAAAATGCGGACACAAAAATTAAG
TCGAGTATTGATTGATATCTGAATTTATAAGTGGTATCTGAATTTTATTT
TTAACTCTATACAAATAAAATGTACATCGAATCAGTGGCGTGGTGGCAGG
GGGGCCAGGCCCCCGCAGCGGAGCCCTTTTGAGAAGGGGCGCCCAAAAAT
AAGGGACGCCAAGAAGGATTTTTCAGGCGCCCATATCGAAAGATTGACAA
ATGAAAAAACAAAAATGGCGNTGTTTTATGGAACAGCTGCAATTAAGACC
AGACCAGTATAAGGAATGTCTATAGCAATCAATGTTCTTATAAAAAAAGG
GGACATAATACATCTAACACCACAACAGGGGTCTGGGGTCAATCTTGATC
AAATTCCAAAACTTTTTTTTTTGTCACCGTTATTTTGGAATTTTTGACAA
TCATGATGATCTTTTTATGAATCTTTACGCGTGCTGCTGNTGCCAAAAAA
CAAAAAATCTTTAAAAAGGGCGCCATATTTGCCCTGGCCACCCCAGAGAA
ATTTTCCCACCACGCCACTGCATTGAATCTCAGTATCAAGCGGCTAAAGG
TCATTTTTCGTNATTGATGACTCGCCATTTTAACGATGATAGTTTGATTG
TTCGTTAATGAATCGTGGGAAAATGATGGCATTTGATTTTTAAAGAGAAC
AAAGGGCATCATTAGCGACTTNTCCGTCCTTACCCTGGCGAGCAATGTAC
TCTGAATCTCCGAAACAGAATGACACCATATAGATATTTCTAATTTAATC
CAATTGCGAACCTGATACTGGAATGCATTAGTTGCGACCTAACAAGTTGT
TAATACTTTTACCAGTCTTTTATCTCGCTTTTTTATCATATCTCCTTATC
TTATCTCTAAATGTGAAACATGATTTCGGGTATTTTTGACCTTTTCTCAA
AGCAAGATATTTTCAAATGAAGTAGTGTCTACTTTCAGTACTTTGGTCTT
GTATGGTTATATCACTAGGCTTCGTCTTAATTTTGCTAAATGTGAGGAGT
GAATTACTTGAGAAAAGGTGTACAATTCCTTTTGACATCTCGAACAATGC
CAATGGGTCTCTCGCGTTTCCACCTAAATATTTTCAAAAACATCCAGCGC
CTGAAAAGACCACTTCGCCCATCCATCCATTCAAGATTTTTAAAAACCTT
TTTAGATATTCGGATCGGTGGAATTAGACAATAATTATGGAAATAATTTA
AGTATTTCAGACGATGCATAAGAGTATCTGCAACTCGAACACTCACGAGG
AACACAAACTTGTTCGAGTTAAGGAGTGGAGTAAGGTTTATAAAGCATTG
TTAACTGAAGGAACAGAACATATAAATTTTTTTGGGAATGTCCGGAATTC
TAGGCAAAAAGCATGTTCTTATTCTAAAGAAATTTTCTGTGGTGTATTTT
CAGTTTTCATTTGGACGATGATATGGTATGGCAGAAATAGGAAACAAAAT
TCATACTTCGAAGGGTCGGATACAGGAGGTAGGCTATCTTATTCATGGAG
AGTAATTAGTTTCCATATAAGGTAATACGATAATAAAGTGCACTCTCCTC
CATTGGTTATAGCCTCCCTCTGTATCCGAGCCTGCTTCGAAAGAGCGATT
TCAAGCGTGTCGGATAAATGTCCGACCGTTATTAAATCCCTGTGATGGGA
TGATGGGATAAGATCATCCAACGTACTATACCTAAAAGAGAGTTCTCTGT
AAACCATGGGTGGCTTGTTTGTTTCTTTCTATTTGGCAGATCCTTAATAA
AAATTGTTTTTTCAATACTTGTAAAACCTGCCAAAAAATTTGTCAGAACA
ACATTTTGCTTGTCTATTTTGTTTATCTGTGGTTATCCTTCTCATTTGAT
TTCTTTTTTTTTGCGGGAGGTCCCCGGGGTCTGAAGTAGCGAGCACCTCA
CTAATAACCGGGACTTTTCATCTCGTTTCTTGCGTAAAAAAACGCGGGTG
ACGTCTAGTATAGGCTAGGTCTGAAGTTGCTGATCGAAAACTCGCACCCT
GTATCTCGCACGGGCTATCAATACACACCTCAGACCTGAATATTACTTTA
TTGCCTGAAAACATATGTTAAACTTAAGGCTACTAAGCAAGTATATCAGT
TAAATTGTTGTTGACACTATATAAACGCAAACAAGAGAAATTACGCTGCA
TTCTGTCAAAATTTCCACGAAACTTGGCAAGGTTAATGAAATTGAGACAT
ATCAAACTTGATTGAATTTGATTGTTAATCAAGTACTATATGTCTCATTT
CAATGACCTTGCATGGAAATTCTTCCGGTTTGAAGTTTTTTCAAGGTCGA
CAGTGATTGGCTTGCTCGATATATAACTATTCGAATCAATCTTTCTATAA
GCTTAAAACAATCAATCGAGATTTTTTAAGCGCATTGGAAGTTATAGTTC
AAAGGCAGTAAGTTTAAGGGAAGTTTAAGACTCATTTTGTAACAGCTTTT
AATTCATAGCGGATTATACCTTGATTTGAAATGACAGTTACAGGATTATA
CTGGTTCGGAATTAGTTTTTTTTATAAGCATTCTTTTAGTTGTACCAATC
ACAAGGCCTAAATTTTCAAAGTTTTAATTATTTTTTAGAATCATGCTGAT
CCTCTACGATATTAATTGACAATGTAAATAAGGCTTTAAGAAATTTCGAG
ATAATCGTTTTCTCCTTGGTCTTCTTTAAAATTTAAAGATGACGTAGAAT
ATTTTCCGAGAGATTGGAAGGTTTTCTCAAGAATGTTTTCATCCTTGAGG
ATGAAAAATTTAAGAATCAAGAGTCTAGTTTCAATTTATGTAATTCTTAT
AAAAAAACTATCTATTTCCCTCTCACACCTTAAGAAGATACTTCATAGCT
CTTAAACAAGGCTTTCTCGTTTGATGTAAGTTCGGAGACAAGGTCATCAA
ATACTATGTTATGAAAAAGATTTGTTTCTTTGACAAAAAAACGGTACATA
ATTTTGCAAAGGCGATTGAATTTTTGTGCTCTGACAATCAGGTATTCAAT
CTGAGATATTTTCAATGTCCATAAACTATAGTTGTAAAACATCAATCTTC
TAGATTGTTCAGATGAAATCGAGAACAAGTATCTCAATTGAAATTTCGAG
TCAAGAAGTTCAGATTATGTATCGTACTGGAAAATAGCAATTTTTTCCAT
GCTGGCGTTATCTCCTTGGTGTCATTTCCGCGCTATATAAAGTTATTAAC
AAAATCTTTAATATATTATTACCGATAGCGTCGTTTTATGCTCATCTCTT
GGTACACGATTTTGGCCGATATGGTTTACCGTTGAACATGTTTTATGATT
GTAATTTTGCTTTCTATTTTCTCGTTTCTCAGCCAACTAACTAAAAACAC
ATAAATTCAAAATGGCAGCAAGACCAAAGGGTTACGGATTAACTGCTGAA
GTCAGAGGAAAAATTGATGGCAAATATGATGGCGAATTAGGTAAGTTGAA
TCTCATACTTCATACAATTTCGAAACGTGTTTTATTTTAACTTCTTCCAC
TCAACTACCAGTCAGAGAATTCCCTCAATTGCGGTATACTGTAATCGCGG
GAAGAAATAACTACCGCGATTGAGAGAATTCCTCGACTGACAACTGTTTT
ATCGGAGCACCACTAATAATAACCACCACTGCCAAATTTTATCAATGAGT
AACCTGCTAAACTTTTCTCTTCAATAATTTGGAAAATAGTTTTTAACTCT
TTACCGGATCAGGTATGATACCAATATTGCTCCTTTAGCCATCTCTATCT
GCTATTGAAGTTTGAAGATCTTCAAGTTTTAGGTCAGTCTAGCTATATAG
TTATTTTTGAAAGCACGAAATAGTTTTAACATCTGATCGTCCTACCGCAT
GTAACTTTATTCTGTTGTGTTATTTTGCCCAAGTTTGCAAGGCATTTCTT
ATAAAGTGGATGGTAAAAAGCACCCCCCCCCATTTATTTTCCTCCATTGT
TTTTCTCATAGCACAACAAGCCATGCAATTCATTGAACATTACGTTCCTG
ACTCCAACGTTTCTGGAAACAGTACATCAGATGCAGTTGCCGAAAAACTG
AAAGACGGGGTCGTTTTATGTAAACTCATCAATGCTATCGAACCTGGGTC
CATTAAAAAATTCAACGAATCAAAAATGGCTTTTAAACAGATGGAAAACA
TCGGAAAGTTCTTAGACGCTATCGACCAGTACGGTGTTGCGAAATCAGAT
AGTTTCCAAACAGTCGATCTTTATGAGAAACAAAACATGCCAGCTGTCAT
CAATGCTATCCACGCTTTAGGACGAAAAGCACAAGGTAAAGGGCGTTATG
GCATCGGCCCAAAAGAGTCGCAAGCCAACAAACGGGAATTTANTCTAAAG
GGTGTTATGGTATCGGCCCAAAAGAGTCGCAAGCCAACAAACGGGAATTT
ACTGAAGAGCAAATGCGTGCTGGTTCAAATGTTATCGGACTTCAAATGGG
TTCCAATAAAGGAGCGTCTCAGGCTGGTCAAAACTTTGGTAAAACTAGAT
CTATCATGGATTAAGTTGGTGATTTATTTGGCAATGAACAAGTTTATCTG
TCACTTTTTGCATTTGTAACCATGCTGGACTTTTTTTCGAAGACTTTTTC
AATTAATATTTTCGAGATACGTTTTGAAGGGTATTATGGGTATTGAAATC
AGTATACGAGCACTGGGTACGATTCTTATTGTTTAGTATTATACAGAGGT
AGGAAAATCTATTTGATGTTTATTTTAGAATATTTAAAGACTATCAAAAA
CCCTGACGTGTGATGAATTATTACCATGGTTTTCATGTCCCTAAGGGCTT
CAATGGTTAAAATACCCAGAGCAAGTTAAAAACATTTTAAGACTTTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059197-exon-scaffold_319-1575043694:329468..329514 | TCONS_00059197-exon-scaffold_319-1575043694:329468..329514 | Clytia hemisphaerica | exon |
| TCONS_00059197-exon-scaffold_319-1575043694:323725..323832 | TCONS_00059197-exon-scaffold_319-1575043694:323725..323832 | Clytia hemisphaerica | exon |
| TCONS_00059197-exon-scaffold_319-1575043694:322315..323203 | TCONS_00059197-exon-scaffold_319-1575043694:322315..323203 | Clytia hemisphaerica | exon |
| TCONS_00059197-exon-scaffold_319-1510915933:329468..329514 | TCONS_00059197-exon-scaffold_319-1510915933:329468..329514 | Clytia hemisphaerica | exon |
| TCONS_00059197-exon-scaffold_319-1510915933:323725..323832 | TCONS_00059197-exon-scaffold_319-1510915933:323725..323832 | Clytia hemisphaerica | exon |
| TCONS_00059197-exon-scaffold_319-1510915933:322315..323203 | TCONS_00059197-exon-scaffold_319-1510915933:322315..323203 | Clytia hemisphaerica | exon |
| TCONS_00059197-exon-scaffold_319-1491911889:329468..329514 | TCONS_00059197-exon-scaffold_319-1491911889:329468..329514 | Clytia hemisphaerica | exon |
| TCONS_00059197-exon-scaffold_319-1491911889:323725..323832 | TCONS_00059197-exon-scaffold_319-1491911889:323725..323832 | Clytia hemisphaerica | exon |
| TCONS_00059197-exon-scaffold_319-1491911889:322315..323203 | TCONS_00059197-exon-scaffold_319-1491911889:322315..323203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_319 | supercontig | scaffold_319:322315..329514 - |
Blast
BLAST of TCONS_00059197 vs. Swiss-Prot (Human)
Match: CNN1 (Calponin-1 OS=Homo sapiens GN=CNN1 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 2.985e-27 Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 2
Query: 86 RPKGYGLTAEVRGKIDGKYDGELAQQAMQFIEHYVPDSNVSGNSTSDAVAEKLKDGVVLCKLINAIEPGSIKKFNESKMAFKQMENIGKFLDAIDQYGVAKSDSFQTVDLYEKQNMPAVINAIHALGRKAQGKG-RYGIGPKESQANKREF 535
R YGL+AEV+ K+ KYD + Q+ ++IE V+G + + LKDG++LC+ IN ++PGS+KK NES + Q+ENIG F+ AI +YGV D F+ DL+E N V + + AL A+ KG + +G K ++ +R+F
Sbjct: 8 RGPAYGLSAEVKNKLAQKYDHQREQELREWIE------GVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKGNKVNVGVKYAEKQERKF 152
The following BLAST results are available for this feature:
|
