TCONS_00059194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059194
Unique NameTCONS_00059194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059194 ID=TCONS_00059194|Name=TCONS_00059194|organism=Clytia hemisphaerica|type=transcript|length=1186bp
CAAAGCAACGCTGAATAAGCAATGGTTACAAAACCTTATACTGAAGAAAA
TTATGATGCTTAAGTTTCAAAGATGAAGTGCTTTTTACAGTCAATCAGTT
TATCAAAGGCTAACCTTATTAGGTTGGATGTTAGAGAATTTCTGTCAGTG
CTATACAGTGTAACTTTTTACTTCTGATTTCGTGGGAGTTTGCGATTGAT
GACAAGCTTAAGTAGGTGATGTATTAGTTGTTTTGTGACGTTTTTTAAAG
ATGGTCTCAGACATCTTTAATATAGTAATGACGTGTCTTTTTTGCTCGTT
AATTTTTCAGTATATAAACAGTTGTAATTTTGAGACAGCCAGTGGGTTGG
GTCGAACGaattgtatttttcttttaatttattctTGTTTCATAGTTATT
TATTTCTCATacacaaaatatttatttgcacaTCAGTATGGCTGACCGAC
CTGATGGATATGGACTCACTGCTGAAGTCCAAGCTCATATTGATGGGAAA
TACGATGAAAAGTTAGCACGTGAGGCCATGGACTGGATCCAATCTTACGT
TCCCGATAGTGGAGTTGGCGGTTTATCTGACGCTAATGATATTCAAGAAA
AACTGAAGGACGGAGTCGTCCTTTGTAAGCTCTTAAACGCTCTCACGCCC
TATTCTATCAAGAAATTTAACACTtcaaaaatggcttttaaacAGATGGA
AAATATCGGATTGGCTTTAGCAGCGATGGAAAATTATGGTGTTTCGAAAA
TAGATCTCTTTCAAACGGTGGATTTGTTTGAAGGTCAGAACATGGCCCTC
GTCATAACCACCATCCACGCTTTAGGAAGAAAAACTGGCGGTAAAGGAAA
GCGTGGTATTGGTCCAAAAGAATCACAACAGAATAAAAGGGAATTCAGCG
AAGAACAATTACGAGCTGGAGAAGGTGTTATCGGACTTCAAATGGGAACA
AATAAATTTGCAAATCAATCCggacaaaattttggcaaaactCGAGCCAT
TATTGATTAACTTTAGAAAAACTTTCATGCTACATTCATTTTTTACGTTA
TTTAgggccaattttttttgaaagaaagatgtGTCATATAACTTTGTTCA
ATAAACATGCCTTTTTTATCGCTGTAAATTTTTTATCTCCTCATGCAAAG
TTTAAAGCATTACGTAAAAGCGTACCGATCTAAATT
Run BLAST on NCBI

protein sequence of TCONS_00059194-protein

>TCONS_00059194-protein ID=TCONS_00059194-protein|Name=TCONS_00059194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MADRPDGYGLTAEVQAHIDGKYDEKLAREAMDWIQSYVPDSGVGGLSDAN
DIQEKLKDGVVLCKLLNALTPYSIKKFNTSKMAFKQMENIGLALAAMENY
GVSKIDLFQTVDLFEGQNMALVITTIHALGRKTGGKGKRGIGPKESQQNK
REFSEEQLRAGEGVIGLQMGTNKFANQSGQNFGKTRAIID
Run BLAST on NCBI

transcript from alignment at scaffold_319:317441..320085-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059194 ID=TCONS_00059194|Name=TCONS_00059194|organism=Clytia hemisphaerica|type=transcript|length=2645bp|location=Sequence derived from alignment at scaffold_319:317441..320085- (Clytia hemisphaerica)
CAAAGCAACGCTGAATAAGCAATGGTTACAAAACCTTATACTGAAGAAAA
TTATGATGCTTAAGTTTCAAAGATGAAGTGCTTTTTACAGTCAATCAGTT
TATCAAAGGCTAACCTTATTAGGTTGGATGTTAGAGAATTTCTGTCAGTG
CTATACAGTGTAACTTTTTACTTCTGATTTCGTGGGAGTTTGCGATTGAT
GACAAGCTTAAGTAGGTGATGTATTAGTTGTTTTGTGACGTTTTTTAAAG
ATGGTCTCAGACATCTTTAATATAGTAATGACGTGTCTTTTTTGCTCGTT
AATTTTTCAGTATATAAACAGTTGTAATTTTGAGACAGCCAGTGGGTTGG
GTCGAACGAATTGTATTTTTCTTTTAATTTATTCTTGTTTCATAGTTATT
TATTTCTCATACACAAAATATTTATTTGCACATCAGTATGGCTGACCGAC
CTGATGGATATGGACTCACTGCTGAAGTCCAAGCTCATATTGATGGGAAA
TACGATGAAAAGTTAGGTAAAGTATAGATTTTTGTACTGAATTTGAATTT
CCATCATACGTTCTGTATTTATTTTCTACACCCCTGTCTCACAGCCCTGG
TGAAACTTTTTCCCACAACGGGGATAAAATCTTTTATCGAAATTCCAATG
AGGACAATAATTCGAAAAATGAATGTCAAAAATCTATTGGATATAGTTTT
GGAGTGCAATTTTATACATAGAATTCTGCATGGGGATGAAATCAAAGTCA
ATTCCCCAGTAGGGGTTGAAATTGTAGGGTATTTTCCCCACTGGGAACGA
AATTTTGACCAAATTTTCCGTGTGTCTTGGATTCCAGCAAGTCTGTACAA
CAGGGGTTTTTTTATTAACCTTATCGGCTTTTTTTACGGCGGCCCTTATT
CCACCACGGACTAATTTTGGGCTTACGCAAATTAGGGCCGTATATAACGC
AAAAACTTGTAAAAATCGCTATTCAGGCTTCAAAACAGTAAGTATTAACT
AATATTTACATTAAAATGTCATCTTTCAGTATATTAAACTGTTGAGAATT
CCATTGAAAATCATTGAGTTTTACAATCATGGTCGTAATATTTGAGAAAA
AAGGGAAATCCACCGGGAAGTTTTGAAACCACAATCGATTTGTAAGTGCT
CTAAAGTAGGTTGGAAGGGTAGAGTTTTAACTCTGAGTTTTAACATGAGA
CTGAAGACTCCAAAAGTTCAAAAATGGTCCAATAAGGCTCATAATTTAGC
CTGGAGGTCTATAAACCCGAGCCAAATTGAAAATTGGATTAAATTTGAAA
GATGGCCCAAAATGGACTTTCTCGCCCTAACTCCAAATTTCGAAAAACGA
GGAAATTAGCTTAATTCTCAATAGATTTCGACCATGATTGTAGATATAGC
ATAGAGCAAAAGAATGGATAGTTTTCATCCTTTAATCATGCCTAAAATCC
TTTAAATTGAGAAAAAATGGTCAAAAACTAACGCCGCTTTTGGGTAAAAA
TTGCATAATTTTGGCCCTTTTTACAACAGCCCCTAGTACGGCACGAGCAA
AAATAACGCCAATAAGGGCCGGCGTAAAAAGGGCCGATAAGGTATTTCGA
CACCACTACTAATAGACGATATCGGCTTTCCGAATTCTCCCCGAATGATT
ACCCATGAATGATGCATTGCGCAAAAAATTCACGGGAAGTTAATATTGTC
CGTGAATTTTTTTGTGCAATGCATCATGGGTAATCATTCGGGGAGAATTC
GGAAAGCCGATATCGTCTATTGGCATATAAATGCAGAGAAAATAAAAGGA
ACCTTATTAGACCAAAATAGACTTAAATTTCTAAAATGCTTATTTCTTCT
CTGTAATTGTACAAAATAAGTCCAGCAGATTGGCCTCTTTTTATTACCCT
CTACGACCTTAAACGGTGAAGTTGATGGAAATGGACGGATGGTAATAATT
TTTATTATTCATTTCATATTTACAGCACGTGAGGCCATGGACTGGATCCA
ATCTTACGTTCCCGATAGTGGAGTTGGCGGTTTATCTGACGCTAATGATA
TTCAAGAAAAACTGAAGGACGGAGTCGTCCTTTGTAAGCTCTTAAACGCT
CTCACGCCCTATTCTATCAAGAAATTTAACACTTCAAAAATGGCTTTTAA
ACAGATGGAAAATATCGGATTGGCTTTAGCAGCGATGGAAAATTATGGTG
TTTCGAAAATAGATCTCTTTCAAACGGTGGATTTGTTTGAAGGTCAGAAC
ATGGCCCTCGTCATAACCACCATCCACGCTTTAGGAAGAAAAACTGGCGG
TAAAGGAAAGCGTGGTATTGGTCCAAAAGAATCACAACAGAATAAAAGGG
AATTCAGCGAAGAACAATTACGAGCTGGAGAAGGTGTTATCGGACTTCAA
ATGGGAACAAATAAATTTGCAAATCAATCCGGACAAAATTTTGGCAAAAC
TCGAGCCATTATTGATTAACTTTAGAAAAACTTTCATGCTACATTCATTT
TTTACGTTATTTAGGGCCAATTTTTTTTGAAAGAAAGATGTGTCATATAA
CTTTGTTCAATAAACATGCCTTTTTTATCGCTGTAAATTTTTTATCTCCT
CATGCAAAGTTTAAAGCATTACGTAAAAGCGTACCGATCTAAATT

Coding sequence (CDS) from alignment at scaffold_319:317441..320085-

>TCONS_00059194 ID=TCONS_00059194|Name=TCONS_00059194|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_319:317441..320085- (Clytia hemisphaerica)
CACGTGAGGCCATGGACTGGATCCAATCTTACGTTCCCGATAGTGGAGTT
GGCGGTTTATCTGACGCTAATGATATTCAAGAAAAACTGAAGGACGGAGT
CGTCCTTTGTAAGCTCTTAAACGCTCTCACGCCCTATTCTATCAAGAAAT
TTAACACTTCAAAAATGGCTTTTAAACAGATGGAAAATATCGGATTGGCT
TTAGCAGCGATGGAAAATTATGGTGTTTCGAAAATAGATCTCTTTCAAAC
GGTGGATTTGTTTGAAGGTCAGAACATGGCCCTCGTCATAACCACCATCC
ACGCTTTAGGAAGAAAAACTGGCGGTAAAGGAAAGCGTGGTATTGGTCCA
AAAGAATCACAACAGAATAAAAGGGAATTCAGCGAAGAACAATTACGAGC
TGGAGAAGGTGTTATCGGACTTCAAATGGGAACAAATAAATTTGCAAATC
AATCCGGACAAAATTTTGGCAAAACTCGAGCCATTATTGATTAAATGGCT
GACCGACCTGATGGATATGGACTCACTGCTGAAGTCCAAGCTCATATTGA
TGGGAAATACGATGAAAAGTTAGCACGTGAGGCCATGGACTGGATCCAAT
CTTACGTTCCCGATAGTGGAGTTGGCGGTTTATCTGACGCTAATGATATT
CAAGAAAAACTGAAGGACGGAGTCGTCCTTTGTAAGCTCTTAAACGCTCT
CACGCCCTATTCTATCAAGAAATTTAACACTTCAAAAATGGCTTTTAAAC
AGATGGAAAATATCGGATTGGCTTTAGCAGCGATGGAAAATTATGGTGTT
TCGAAAATAGATCTCTTTCAAACGGTGGATTTGTTTGAAGGTCAGAACAT
GGCCCTCGTCATAACCACCATCCACGCTTTAGGAAGAAAAACTGGCGGTA
AAGGAAAGCGTGGTATTGGTCCAAAAGAATCACAACAGAATAAAAGGGAA
TTCAGCGAAGAACAATTACGAGCTGGAGAAGGTGTTATCGGACTTCAAAT
GGGAACAAATAAATTTGCAAATCAATCCGGACAAAATTTTGGCAAAACTC
GAGCCATTATTGATTAAATGGCTGACCGACCTGATGGATATGGACTCACT
GCTGAAGTCCAAGCTCATATTGATGGGAAATACGATGAAAAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037277XLOC_037277Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059194-proteinTCONS_00059194-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059194-exon-scaffold_319-1575043694:319570..320085TCONS_00059194-exon-scaffold_319-1575043694:319570..320085Clytia hemisphaericaexon
TCONS_00059194-exon-scaffold_319-1575043694:317441..318110TCONS_00059194-exon-scaffold_319-1575043694:317441..318110Clytia hemisphaericaexon
TCONS_00059194-exon-scaffold_319-1510915933:319570..320085TCONS_00059194-exon-scaffold_319-1510915933:319570..320085Clytia hemisphaericaexon
TCONS_00059194-exon-scaffold_319-1510915933:317441..318110TCONS_00059194-exon-scaffold_319-1510915933:317441..318110Clytia hemisphaericaexon
TCONS_00059194-exon-scaffold_319-1491911889:319570..320085TCONS_00059194-exon-scaffold_319-1491911889:319570..320085Clytia hemisphaericaexon
TCONS_00059194-exon-scaffold_319-1491911889:317441..318110TCONS_00059194-exon-scaffold_319-1491911889:317441..318110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:317441..320085 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
248.453	244.476	262.439	284.913	98.2339	80.0636	108.218	119.975	57.2224	61.8203	54.4858	23.0234	28.6909	32.053	7.60866	10.7985	57.5186	74.0147	11.2716	17.2077	39.463	35.1922	140.729	118.252	30.3713	35.8394	11.4024	11.4782	31.5584	39.9552
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003096SM22_calponin
IPR001715CH-domain
IPR000557Calponin_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00059194 vs. Swiss-Prot (Human)
Match: TAGL3 (Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.214e-41
Identity = 92/199 (46.23%), Postives = 115/199 (57.79%), Query Frame = 3 
Query:  438 MADRPDGYGLTAEVQAHIDGKYDEKLAREAMDWIQSYVPDSGVGGLSDANDIQEKLKDGVVLCKLLNALTPY---SIKKFNTSKMAFKQMENIGLALAAMENYGVSKIDLFQTVDLFEGQNMALVITTIHALXXXXXXXXXXXXXXXES------QQNKREFSEEQLRAGEGVIGLQMGTNKFANQSGQN-FGKTRAII 1004
            MA+R   YGL+ EVQ  I+ KYD  L  + +DWI     +            Q+ L DG VLCKL+N+L P     I K + SKMAFKQME I   L A E YGV   D+FQTVDL+EG++MA V  T+ ALG     K       + S      QQN+R FSEEQLR G+ VIGLQMG+NK A+Q+G   +G  R I+
Sbjct:    1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMPRQIM 199
The following BLAST results are available for this feature:
BLAST of TCONS_00059194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAGL33.214e-4146.23Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2[more]
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