TCONS_00059192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059192
Unique NameTCONS_00059192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059192 ID=TCONS_00059192|Name=TCONS_00059192|organism=Clytia hemisphaerica|type=transcript|length=602bp
GCGAAAGAGAGGTAGTGGTTTACTGTAGAGATGGTACACGAAAAGCTATA
CACAAGATCAAATACTGCAGAAAATGTCAGCTTTCCGAGCATTACTCGTA
CCGTGTTACAAGCTACTACAGATATTTGGACATAAAAGAATACGAAAATT
CAAAATATCTCTTCAGCAGCGAGAGCACTGCATTCGAAAAGGAGCTGCTA
AGGGAATATAAATGGGAATTGGTTATTGGAAAAATGAGCTTTTCAACTAA
AGCAAATATCTACAATCAAGTAAACAAGAACAGAATGAATATATTACGAA
ATGAACTCGACAGGCGTCGTTTGGAAGAAGGCTTTCTGCTCTACGCTGTT
TGTGAAATATCAACAACTTATGATATAGTTATGGACAGTTCAATTGATGA
TTTATACGCCTTAATTGATTACATAATACCATTCTTTTACAATGCGTTCA
TCAAAAGATGGTCAGAACATCGATGTAAAACACCAGGATGTGGAAAGGTT
ATTGTGCTCGATGGAAACATGAAAAACACCCGACAAGTTTGTTCTGTAAA
AGATGTTACTAGCTTTATCTTTCGGACGTGGGCAGAAGAAATAAAAACGG
GT
Run BLAST on NCBI

protein sequence of TCONS_00059192-protein

>TCONS_00059192-protein ID=TCONS_00059192-protein|Name=TCONS_00059192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
EREVVVYCRDGTRKAIHKIKYCRKCQLSEHYSYRVTSYYRYLDIKEYENS
KYLFSSESTAFEKELLREYKWELVIGKMSFSTKANIYNQVNKNRMNILRN
ELDRRRLEEGFLLYAVCEISTTYDIVMDSSIDDLYALIDYIIPFFYNAFI
KRWSEHRCKTPGCGKVIVLDGNMKNTRQVCSVKDVTSFIFRTWAEEIKTG
Run BLAST on NCBI

transcript from alignment at scaffold_319:269797..273658-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059192 ID=TCONS_00059192|Name=TCONS_00059192|organism=Clytia hemisphaerica|type=transcript|length=3862bp|location=Sequence derived from alignment at scaffold_319:269797..273658- (Clytia hemisphaerica)
GCGAAAGAGAGGTAGTGGTTTACTGTAGAGATGGTACACGAAAAGCTATA
CACAAGATCAAATACTGCAGAAAATGTCAGCTTTCCGAGCATTACTCGTA
CCGTGTTACAAGCTACTACAGATATTTGGACATAAAAGAATACGAAAATT
CAAAATATCTCTTCAGCAGCGAGAGCACTGCATTCGAAAAGGAGCTGCTA
AGGGAATATAAATGGGAATTGGTTATTGGAAAAATGAGCTTTTCAACTAA
AGCAAATATCTACAATCAAGTAAACAAGAACAGGTAAGTGGTAATTTTCT
GATTAGACATACTGCATGGATGTAAAAAAACAGATTGAGGATTTAACTCG
TACTGTACTGTCCATCGATCATTGGAACCAAACAGCTGCTTAGTTGCTTT
GGGAAAAAGTAATTAATTTTGCTCATTTTTATGGAAGAGCTAAAGTTGGT
ATGTGTTTGAATAAAAACACATTGCAGTTTTAAATTTGTGCATCGATGTA
TAATTGTTTTATAAATCAAAAATAAGAGACTGTGCTATGAAAAAAACACA
AAATCCCTCACTTCTATGGGTTGCTGCTCGTAAATTCATCAATGAATTTT
AAATTTTATTAAACCTTAAGTAAAGGTAACCTTTCATCAATCATCTGTCA
AAATTTGAAAGCAGCCGCTTTTTTAGCTGTGAAAATTTTTTGTGGGTAAT
TGCCACCGGAGGAAGCCTATAGCTTCTGAGGATGGCATTCGTAGACACAT
AAGGAAGTTGGGCACAAATCTCATAATTTTGTNCATCTGTCAAAATTTGA
AAGCAGCCGCTTTTTTAGCTGGAAAAATTTTTTGTGGGTAATTGCCACCG
GAGGAAGCCTATAGCTTCTGAGGATGGCATTCGTAGACACATAAGGAAGT
TGGGCAAAAATCTCATAATTTTGCGCACGTTTTCGGTATCTTAGTTCCGC
TTAACGGTAGCATTCTTATCTTACGGTTTCTCTATTGTTTTATCATCATC
AAAAAGACTTTTTCTGAATTATTTTGATCTGATTACTCATTTTGAAATGC
CAGTTTGTCTTCTAAGGAAATTCCCTTTTCTGGGGAATTCCCTTTTTATA
CCACAAGTAGTTATTAAGCGCTCTTCGTAGGTTAAAAGTATTACTCTACT
CAAAGTATTCGAGCAGTTATGTTGCTAAACGTATACATTAATAAATTAAC
ATATGAAGAGCAGTATCTTCAGATATATACGCTTTTTATAGGAAAAACCA
GTCAGTCATATGGTTCTGGCCGGGCTGCTCTTAAATTTATATGAGTTTTT
CAGCCTTAAATGTCAATATTAATTAAAATGGAAACATGTACTTCTCAGTA
ATTCTGAAACCTGAGGTTCGGATTCTTCTTAATTTGTTCTTAGGTTTTGG
CCACATGTCAGCCTCGTATTCTTATGAAATTGTTCTTATAAAAAACGTGT
AAGACAAGGCACGGATGTCACTCTAAGTAGACTGTAAATCACTCCCTTGA
CACATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAC
TGTAGGGCTAAGATCATTCCTTTTGAAAGCAAATTCAACTCTATGTGTTC
GTTTTGCTGCGGTGGCACCTTAATGAAAGTTATGGCTAGTTTTAAGAATG
TATGTTAGTTTTAACCAACGCAACATCTTCAATTTTGAATTTGTAAAGTT
TCTCTTTGTGAAACTAAAATTCTGCATATTTGTGAGTAAAAAATTACAAA
TATTAGAAGTGAAAAAGCTTGAAAATTCTACAAAGTTTTATGTTCATCGC
CAAAGTTATGGGGATTTCGGAAAAAAAATCATGCAATCTTCACAACCTTG
TTTCCCCTTCATACAAATAACCCCTCCCCCTGGGCATGACCAAACTCAAG
GGCAGATAGGGTTAATAGGGTGGATAAGTACTTTTTGCAGGCTTTCAACG
ACATTGACCTAGACAGCTGGCAAATTATTCATAATATATTTATCAAACCC
GCCACCCTTACTAGATTTGGGATTATTAGGCGCCTGAGTACAATGGATGA
AGTTTTCAATCGTTCTTCCATGTAAAAACTCCATACTTCCATGGTTTATT
TTTTGTTTCACTTCCAGAATGAATATATTACGAAATGAACTCGACAGGCG
TCGTTTGGAAGAAGGCTTTCTGCTCTACGCTGTTTGTGAAATATCAACAA
CTTATGATATAGTTATGGACAGTTCAATTGATGATTTATACGCCTTAATT
GATTACATAATACCATTCTTTTACAATGCGTTCATCAAAAGATGGTCAGG
TAAGTCTATGAGACGCTGCAAAACAAAATTTTGAGTTATAATAAAGGCAT
CGTGTGCATCTGCTTTTGCAAAGGAATTCTATTATAGTCTGGTAGAATTA
GGCTACGACCTTGACATAATTCCAACCAAGCTGAAATTTGGCACAAAGCT
CAGTCATAGGATACTTAGTCACCAGAAAGGAGAAAGTCAAAAAATATTTT
TCTTCTACATTCGAGGAACAATATTTCAATCAATAATAAAACCCCTTTCC
ACAAGTTGGACACGAGCCCCTTTTTCAGAACATAGCATTCTTTACTATTA
TTGTAATTAGACTTTTAGACAATCAAACGTTTTTTATTTTCCAAAATTAG
TCGAACTTGAGCTAAAAATTGTTATTTTTGGTCAAACTTGTTGGGATTGG
GTTGTGCTTCATTGTCTAATCGCACGATGAGTTATTTTTTCTTATTTGGC
GCCCCTTCATAGAGAGCAATTAATCGTTGATTGCATCCTGTAGAAAGCAA
TTAATCGTTTAATCACACTCTTCAATGCCACACCAATGTTTACAATATTG
ATTTTAATGTGTTTTTTTTGTAGTTATTTTTCATCATTCAAACGTTTTAA
TTGCATTCGAAATTCATTTTTTGAGAAAGAAAATCTGTAAAAAATAGTAG
AAGAAATATAGAGAGAAGAGAAAAATACGTATCAGTGTAATTTACTTTCC
TAGCGGGAAATAAGTAGTGAAACCCATTGTGCGATTAACTCGTAATCAAA
TAATAACTGGTACAATTCGAAAATTGCATTCGTGATTTTTTTGTTTCGAA
TTTTCCTCGTCCTTTCGGACTCGGAAATATAATAACAAAAAAATCACGCG
TGCAATTATTCTCGAGTTACACTCGTTATCATGTGATTACATATATCAGA
TGCCCGGAAAGCCCGAGTTACTAAAACTCGAGTTACAAAAACCCGAGTTA
CGACAAATGTGACGTCACAAGTCTCAAATTATGACGTCATAAGGAGGTTT
TGTAACTCGGGTTTTTGTAACTCGGATTTTTGTAACTCGAGTTTTCCGGT
CCTCCATATACCAAAAAGAAAAAAAAAATTTGGCTTAAGAAAAAAATAAA
AAATAAGAAAGATAAGGACTTCACATCAATTTCCACTAAAGATTTACCAA
TTAAAAAGTTGCGGGTTATGAGTAAAAGCCACGGCGTCATTGAGTCATTG
ACAGTTGATATTTTTTTATTTTCTGTGTTATCTTCATTCGCGAAAGTTTA
AAAAGATTTTATCGTATTTCTTCAGAACATCGATGTAAAACACCAGGATG
TGGAAAGGTTATTGTGCTCGATGGAAACATGAAAAACACCCGACAAGTTT
GTTCTGTAAAAGATGTTACTAGCTTTATCTTTCGGACGTGGGCAGAAGAA
ATAAAAACGGGT

Coding sequence (CDS) from alignment at scaffold_319:269797..273658-

>TCONS_00059192 ID=TCONS_00059192|Name=TCONS_00059192|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_319:269797..273658- (Clytia hemisphaerica)
AACATCGATGTAAAACACCAGGATGTGGAAAGGTTATTGTGCTCGATGGA
AACATGAAAAACACCCGACAAGTTTGTTCTGTAAAAGATGTTACTAGCTT
TATCTTTCGGACGTGGGCAGAAGAAATAAAAACGGGTAATGAATATATTA
CGAAATGAACTCGACAGGCGTCGTTTGGAAGAAGGCTTTCTGCTCTACGC
TGTTTGTGAAATATCAACAACTTATGATATAGTTATGGACAGTTCAATTG
ATGATTTATACGCCTTAATTGATTACATAATACCATTCTTTTACAATGCG
TTCATCAAAAGATGGTCAGGAAAGAGAGGTAGTGGTTTACTGTAGAGATG
GTACACGAAAAGCTATACACAAGATCAAATACTGCAGAAAATGTCAGCTT
TCCGAGCATTACTCGTACCGTGTTACAAGCTACTACAGATATTTGGACAT
AAAAGAATACGAAAATTCAAAATATCTCTTCAGCAGCGAGAGCACTGCAT
TCGAAAAGGAGCTGCTAAGGGAATATAAATGGGAATTGGTTATTGGAAAA
ATGAGCTTTTCAACTAAAGCAAATATCTACAATCAAGTAAACAAGAACAG
AACATCGATGTAAAACACCAGGATGTGGAAAGGTTATTGTGCTCGATGGA
AACATGAAAAACACCCGACAAGTTTGTTCTGTAAAAGATGTTACTAGCTT
TATCTTTCGGACGTGGGCAGAAGAAATAAAAACGGGTAATGAATATATTA
CGAAATGAACTCGACAGGCGTCGTTTGGAAGAAGGCTTTCTGCTCTACGC
TGTTTGTGAAATATCAACAACTTATGATATAGTTATGGACAGTTCAATTG
ATGATTTATACGCCTTAATTGATTACATAATACCATTCTTTTACAATGCG
TTCATCAAAAGATGGTCAGGAAAGAGAGGTAGTGGTTTACTGTAGAGATG
GTACACGAAAAGCTATACACAAGATCAAATACTGCAGAAAATGTCAGCTT
TCCGAGCATTACTCGTACCGTGTTACAAGCTACTACAGATATTTGGACAT
AAAAGAATACGAAAATTCAAAATATCTCTTCAGCAGCGAGAGCACTGCAT
TCGAAAAGGAGCTGCTAAGGGAATATAAATGGGAATTGGTTATTGGAAAA
ATGAGCTTTTCAACTAAAGCAAATATCTACAATCAAGTAAACAAGAACAG
AACATCGATGTAAAACACCAGGATGTGGAAAGGTTATTGTGCTCGATGGA
AACATGAAAAACACCCGACAAGTTTGTTCTGTAAAAGATGTTACTAGCTT
TATCTTTCGGACGTGGGCAGAAGAAATAAAAACGGGTAATGAATATATTA
CGAAATGAACTCGACAGGCGTCGTTTGGAAGAAGGCTTTCTGCTCTACGC
TGTTTGTGAAATATCAACAACTTATGATATAGTTATGGACAGTTCAATTG
ATGATTTATACGCCTTAATTGATTACATAATACCATTCTTTTACAATGCG
TTCATCAAAAGATGGTCAGGAAAGAGAGGTAGTGGTTTACTGTAGAGATG
GTACACGAAAAGCTATACACAAGATCAAATACTGCAGAAAATGTCAGCTT
TCCGAGCATTACTCGTACCGTGTTACAAGCTACTACAGATATTTGGACAT
AAAAGAATACGAAAATTCAAAATATCTCTTCAGCAGCGAGAGCACTGCAT
TCGAAAAGGAGCTGCTAAGGGAATATAAATGGGAATTGGTTATTGGAAAA
ATGAGCTTTTCAACTAAAGCAAATATCTACAATCAAGTAAACAAGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037275XLOC_037275Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059192-proteinTCONS_00059192-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059192-exon-scaffold_319-1575043694:273376..273658TCONS_00059192-exon-scaffold_319-1575043694:273376..273658Clytia hemisphaericaexon
TCONS_00059192-exon-scaffold_319-1575043694:271210..271391TCONS_00059192-exon-scaffold_319-1575043694:271210..271391Clytia hemisphaericaexon
TCONS_00059192-exon-scaffold_319-1575043694:269797..269933TCONS_00059192-exon-scaffold_319-1575043694:269797..269933Clytia hemisphaericaexon
TCONS_00059192-exon-scaffold_319-1510915933:273376..273658TCONS_00059192-exon-scaffold_319-1510915933:273376..273658Clytia hemisphaericaexon
TCONS_00059192-exon-scaffold_319-1510915933:271210..271391TCONS_00059192-exon-scaffold_319-1510915933:271210..271391Clytia hemisphaericaexon
TCONS_00059192-exon-scaffold_319-1510915933:269797..269933TCONS_00059192-exon-scaffold_319-1510915933:269797..269933Clytia hemisphaericaexon
TCONS_00059192-exon-scaffold_319-1491911889:273376..273658TCONS_00059192-exon-scaffold_319-1491911889:273376..273658Clytia hemisphaericaexon
TCONS_00059192-exon-scaffold_319-1491911889:271210..271391TCONS_00059192-exon-scaffold_319-1491911889:271210..271391Clytia hemisphaericaexon
TCONS_00059192-exon-scaffold_319-1491911889:269797..269933TCONS_00059192-exon-scaffold_319-1491911889:269797..269933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:269797..273658 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.180548	0	0	0	0	0	0.116062	0.108656	0	0	0	0	0.0600385	0.374103	0.461346	0.825158	0.0677685	0.208381	0	0.100419	0.174564	0	0	0	0	0	0	0.132105	0.100197	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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