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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059151 ID=TCONS_00059151|Name=TCONS_00059151|organism=Clytia hemisphaerica|type=transcript|length=1764bp
AACGAAATATGGAGTTTAgctctttagaaaaaaagttggaaTATTTGACA
GAAAGACTTTCATTGGTTGAAAATGTTGTAAATGAAATTATTCTGAAGCC
TTGTGATGTACAACCAGACGAAGCGAGAAACGTAGATTTTGTTCCAAACA
AAGAAAATAGAATCgatgaaaaattaattgaaGATGTTGTCCGGAACATA
TTAAAAGAACACGGATTATGCTTAGAGAAAGCAGTTACGCCTAATCAAGA
GATAAGAGCCTTGGAACAGAAAATAGAATATTTGACGGATAGGCtctcat
tggttgaaaatgTTGTGAATGAAATCCTTCTGAAGCCTTGCGATGTTAAA
CCCAATGCAGCGAAAAACGCAGATTTTGTGCCTGAAAGAGGAACACATTT
ATCAGACGAAGCTAATGCAATCCCATTTAAAACTATGAATCAGACTGCCG
TTGTTGACCATAATCCTCAAAATACAGGAAAGATCGAACAGACGATCAGC
GAAGAGAGAAAAAGCTATGCTGAAGGTCTGACCATACATGGTGCTACACG
CATCGTCAGTGGCCGCCCTTTGAATCGAATTCTATGGACAATACTTGTTA
TTGCTTCTTTCGTGGTTGCTGTGTCGATTTCGAAGGATCATTTCAAAGCT
TTCTTAAGTCATGAGACCATAACCCACACTCATTTTGTTCCTCAAGAAGT
TATGCCTTATCCCGCTATAACCATTTGTGATTGGCAGGGTTTAGCTAGAG
AGTCGCGCCATCTCCATGGTGGCCTACCCATTTTTCCACGCCCACGAACT
GTAGTCGAGAACGTTAATTATTGTGGTTTCAATTTATCGACATGTGGATA
CAATAAATCAGGAATGCTGAATGTGTACAAAGTCAATTATGACTATTCTG
AATTGTCCATAATGAACAATCTGGTCACAATTGATGATACAACAAACTGT
TTCACCGTCGATGGAATCGAATCTGATGATCCAATGGGTATTTTAGATAT
TACAGTTCTAGCTAACAGGTCTGTTAATAATTTCTGGAGTATATTACAAA
TCAACCCTACAACAGAAACTTTCCCAGAGGCGACGGTGAAAATGTACCCC
GCTGGCGAAGGGCGTTATGCGGTTACTTTGACACGAAAGATAACAAAGCT
GCTCGGCCACCCTTATACTGATTGCATCAAAGGCAGTGGAACCTATTCTC
AAAATATATTTACAGGCAACTATACTGTTAACAAATGtaagaaaggttgc
tttttaGAGAACGTTTTTGCGCAATGTGGTGCCATTCCTCAAATGTATTT
AAAGCACGCTAGAGAGCCGCATCAATTCACAAGCACGACACATCTTAATG
CTACAGAGGGTCTAACTTGCTttagaaaaatcgaaaatgacAAAACACTA
TTAGCAAAATGTTATTCTAAATGTCATTTACAGCCTTGTTATAAAGAAGA
AACTGAATTGGAGCTTACCCATCATAAAGCCCGCTTCCCTAATACCTTCG
GACTTAGCTTTCACtttaaaacttttgcaattgaGTTTTCGGAAGAAGTA
CCACTTTACACTTGGCAAGAATTATTCTCGAATTTTGGTGGCTGTGTTGG
TTTGATGACTGGAGCATCGATTCTCTCACTTTTTGAACTCTgtattttct
ttggtttgatcGTTTTCGACTATTTTGACATTTATGCGAATATAAAGAGA
CGGTTTCAACGCAAAATAAATACTTAACATACCCACCCATCTTGTCAAAT
AATTAGTCAGGCAN Run BLAST on NCBI protein sequence of TCONS_00059151-protein >TCONS_00059151-protein ID=TCONS_00059151-protein|Name=TCONS_00059151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=574bp
RNMEFSSLEKKLEYLTERLSLVENVVNEIILKPCDVQPDEARNVDFVPNK
ENRIDEKLIEDVVRNILKEHGLCLEKAVTPNQEIRALEQKIEYLTDRLSL
VENVVNEILLKPCDVKPNAAKNADFVPERGTHLSDEANAIPFKTMNQTAV
VDHNPQNTGKIEQTISEERKSYAEGLTIHGATRIVSGRPLNRILWTILVI
ASFVVAVSISKDHFKAFLSHETITHTHFVPQEVMPYPAITICDWQGLARE
SRHLHGGLPIFPRPRTVVENVNYCGFNLSTCGYNKSGMLNVYKVNYDYSE
LSIMNNLVTIDDTTNCFTVDGIESDDPMGILDITVLANRSVNNFWSILQI
NPTTETFPEATVKMYPAGEGRYAVTLTRKITKLLGHPYTDCIKGSGTYSQ
NIFTGNYTVNKCKKGCFLENVFAQCGAIPQMYLKHAREPHQFTSTTHLNA
TEGLTCFRKIENDKTLLAKCYSKCHLQPCYKEETELELTHHKARFPNTFG
LSFHFKTFAIEFSEEVPLYTWQELFSNFGGCVGLMTGASILSLFELCIFF
GLIVFDYFDIYANIKRRFQRKINT Run BLAST on NCBI transcript from alignment at scaffold_318:132642..134405 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059151 ID=TCONS_00059151|Name=TCONS_00059151|organism=Clytia hemisphaerica|type=transcript|length=1764bp|location=Sequence derived from alignment at scaffold_318:132642..134405 (Clytia hemisphaerica)
NTGCCTGACTAATTATTTGACAAGATGGGTGGGTATGTTAAGTATTTATT
TTGCGTTGAAACCGTCTCTTTATATTCGCATAAATGTCAAAATAGTCGAA
AACgatcaaaccaaagaaaatacAGAGTTCAAAAAGTGAGAGAATCGATG
CTCCAGTCATCAAACCAACACAGCCACCAAAATTCGAGAATAATTCTTGC
CAAGTGTAAAGTGGTACTTCTTCCGAAAACtcaattgcaaaagttttaaa
GTGAAAGCTAAGTCCGAAGGTATTAGGGAAGCGGGCTTTATGATGGGTAA
GCTCCAATTCAGTTTCTTCTTTATAACAAGGCTGTAAATGACATTTAGAA
TAACATTTTGCTAATAGTGTTTTgtcattttcgatttttctaaAGCAAGT
TAGACCCTCTGTAGCATTAAGATGTGTCGTGCTTGTGAATTGATGCGGCT
CTCTAGCGTGCTTTAAATACATTTGAGGAATGGCACCACATTGCGCAAAA
ACGTTCTCtaaaaagcaacctttcttaCATTTGTTAACAGTATAGTTGCC
TGTAAATATATTTTGAGAATAGGTTCCACTGCCTTTGATGCAATCAGTAT
AAGGGTGGCCGAGCAGCTTTGTTATCTTTCGTGTCAAAGTAACCGCATAA
CGCCCTTCGCCAGCGGGGTACATTTTCACCGTCGCCTCTGGGAAAGTTTC
TGTTGTAGGGTTGATTTGTAATATACTCCAGAAATTATTAACAGACCTGT
TAGCTAGAACTGTAATATCTAAAATACCCATTGGATCATCAGATTCGATT
CCATCGACGGTGAAACAGTTTGTTGTATCATCAATTGTGACCAGATTGTT
CATTATGGACAATTCAGAATAGTCATAATTGACTTTGTACACATTCAGCA
TTCCTGATTTATTGTATCCACATGTCGATAAATTGAAACCACAATAATTA
ACGTTCTCGACTACAGTTCGTGGGCGTGGAAAAATGGGTAGGCCACCATG
GAGATGGCGCGACTCTCTAGCTAAACCCTGCCAATCACAAATGGTTATAG
CGGGATAAGGCATAACTTCTTGAGGAACAAAATGAGTGTGGGTTATGGTC
TCATGACTTAAGAAAGCTTTGAAATGATCCTTCGAAATCGACACAGCAAC
CACGAAAGAAGCAATAACAAGTATTGTCCATAGAATTCGATTCAAAGGGC
GGCCACTGACGATGCGTGTAGCACCATGTATGGTCAGACCTTCAGCATAG
CTTTTTCTCTCTTCGCTGATCGTCTGTTCGATCTTTCCTGTATTTTGAGG
ATTATGGTCAACAACGGCAGTCTGATTCATAGTTTTAAATGGGATTGCAT
TAGCTTCGTCTGATAAATGTGTTCCTCTTTCAGGCACAAAATCTGCGTTT
TTCGCTGCATTGGGTTTAACATCGCAAGGCTTCAGAAGGATTTCATTCAC
AAcattttcaaccaatgagaGCCTATCCGTCAAATATTCTATTTTCTGTT
CCAAGGCTCTTATCTCTTGATTAGGCGTAACTGCTTTCTCTAAGCATAAT
CCGTGTTCTTTTAATATGTTCCGGACAACATCttcaattaatttttcatc
GATTCTATTTTCTTTGTTTGGAACAAAATCTACGTTTCTCGCTTCGTCTG
GTTGTACATCACAAGGCTTCAGAATAATTTCATTTACAACATTTTCAACC
AATGAAAGTCTTTCTGTCAAATAttccaactttttttctaaagagcTAAA
CTCCATATTTCGTT Coding sequence (CDS) from alignment at scaffold_318:132642..134405 >TCONS_00059151 ID=TCONS_00059151|Name=TCONS_00059151|organism=Clytia hemisphaerica|type=CDS|length=1725bp|location=Sequence derived from alignment at scaffold_318:132642..134405 (Clytia hemisphaerica)
TTAAGTATTTATTTTGCGTTGAAACCGTCTCTTTATATTCGCATAAATGT
CAAAATAGTCGAAAACgatcaaaccaaagaaaatacAGAGTTCAAAAAGT
GAGAGAATCGATGCTCCAGTCATCAAACCAACACAGCCACCAAAATTCGA
GAATAATTCTTGCCAAGTGTAAAGTGGTACTTCTTCCGAAAACtcaattg
caaaagttttaaaGTGAAAGCTAAGTCCGAAGGTATTAGGGAAGCGGGCT
TTATGATGGGTAAGCTCCAATTCAGTTTCTTCTTTATAACAAGGCTGTAA
ATGACATTTAGAATAACATTTTGCTAATAGTGTTTTgtcattttcgattt
ttctaaAGCAAGTTAGACCCTCTGTAGCATTAAGATGTGTCGTGCTTGTG
AATTGATGCGGCTCTCTAGCGTGCTTTAAATACATTTGAGGAATGGCACC
ACATTGCGCAAAAACGTTCTCtaaaaagcaacctttcttaCATTTGTTAA
CAGTATAGTTGCCTGTAAATATATTTTGAGAATAGGTTCCACTGCCTTTG
ATGCAATCAGTATAAGGGTGGCCGAGCAGCTTTGTTATCTTTCGTGTCAA
AGTAACCGCATAACGCCCTTCGCCAGCGGGGTACATTTTCACCGTCGCCT
CTGGGAAAGTTTCTGTTGTAGGGTTGATTTGTAATATACTCCAGAAATTA
TTAACAGACCTGTTAGCTAGAACTGTAATATCTAAAATACCCATTGGATC
ATCAGATTCGATTCCATCGACGGTGAAACAGTTTGTTGTATCATCAATTG
TGACCAGATTGTTCATTATGGACAATTCAGAATAGTCATAATTGACTTTG
TACACATTCAGCATTCCTGATTTATTGTATCCACATGTCGATAAATTGAA
ACCACAATAATTAACGTTCTCGACTACAGTTCGTGGGCGTGGAAAAATGG
GTAGGCCACCATGGAGATGGCGCGACTCTCTAGCTAAACCCTGCCAATCA
CAAATGGTTATAGCGGGATAAGGCATAACTTCTTGAGGAACAAAATGAGT
GTGGGTTATGGTCTCATGACTTAAGAAAGCTTTGAAATGATCCTTCGAAA
TCGACACAGCAACCACGAAAGAAGCAATAACAAGTATTGTCCATAGAATT
CGATTCAAAGGGCGGCCACTGACGATGCGTGTAGCACCATGTATGGTCAG
ACCTTCAGCATAGCTTTTTCTCTCTTCGCTGATCGTCTGTTCGATCTTTC
CTGTATTTTGAGGATTATGGTCAACAACGGCAGTCTGATTCATAGTTTTA
AATGGGATTGCATTAGCTTCGTCTGATAAATGTGTTCCTCTTTCAGGCAC
AAAATCTGCGTTTTTCGCTGCATTGGGTTTAACATCGCAAGGCTTCAGAA
GGATTTCATTCACAAcattttcaaccaatgagaGCCTATCCGTCAAATAT
TCTATTTTCTGTTCCAAGGCTCTTATCTCTTGATTAGGCGTAACTGCTTT
CTCTAAGCATAATCCGTGTTCTTTTAATATGTTCCGGACAACATCttcaa
ttaatttttcatcGATTCTATTTTCTTTGTTTGGAACAAAATCTACGTTT
CTCGCTTCGTCTGGTTGTACATCACAAGGCTTCAGAATAATTTCATTTAC
AACATTTTCAACCAATGAAAGTCTTTCTGTCAAATAttccaacttttttt
ctaaagagcTAAACTCCATATTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059151-exon-scaffold_318-1491911889:132642..134405 | TCONS_00059151-exon-scaffold_318-1491911889:132642..134405 | Clytia hemisphaerica | exon |
| TCONS_00059151-exon-scaffold_318-1510915933:132642..134405 | TCONS_00059151-exon-scaffold_318-1510915933:132642..134405 | Clytia hemisphaerica | exon |
| TCONS_00059151-exon-scaffold_318-1575043694:132642..134405 | TCONS_00059151-exon-scaffold_318-1575043694:132642..134405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_318 | supercontig | scaffold_318:132642..134405 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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