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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059134 ID=TCONS_00059134|Name=TCONS_00059134|organism=Clytia hemisphaerica|type=transcript|length=3147bpRun BLAST on NCBI transcript from alignment at scaffold_318:66421..96101- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059134 ID=TCONS_00059134|Name=TCONS_00059134|organism=Clytia hemisphaerica|type=transcript|length=29681bp|location=Sequence derived from alignment at scaffold_318:66421..96101- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00059134 vs. Swiss-Prot (Human)
Match: CFA74 (Cilia- and flagella-associated protein 74 OS=Homo sapiens GN=CFAP74 PE=2 SV=3) HSP 1 Score: 318.931 bits (816), Expect = 2.314e-90 Identity = 206/644 (31.99%), Postives = 323/644 (50.16%), Query Frame = 2
Query: 2 PETIQIQPNDGFGTILPHENIDLHVYFSPDKAQEYRFNLACKSHIGREFILRCRAVGVLPPMKLSHSLIQFKATAVNDISSANFFVINDHTSTNQFTHPVPRVGTGDIFPVGPTSFHFVVPEGAPLSFSPAIGTINAGEKCLVHVTFAPKLDPNLLESKASELEQADLQSRSFVSDASKPEAVESTKELKA-KVNXXXXXTRPKGQKGVTPQPSTVIKQKTQINSQAKQVYINKASIALQHSFHNVFSIYKIPCFLVQGECGSLDTDQ---YNIHNTLYLEVHCPSVKPSLIVASENGDNLVDFGKVPMAQRHTQVISMQNISDKTVKLTSSLLDPIGPFEMVNALRNLEPKAIHSFKISFTPTDNTKFYEVLKIYTMDTTVEVRLVGQGVRPQLALEPSDQYLDVGDALVNDTMHQTLKVTNISELSVVFDLKMGSLISDKHNRVQTMPQFLHWSTPQQQGTCFHSDDEIEVYDENGGVVVTKHIDGDNEFRIGPPNKSGICVFGCEPMHGTMEPGESKEIIISFSPDHLSQLFRDEL---IFDVNGVREFLKLHLVGRSWPSITYVKGFDRLSPEEETLMSNTCSMEREKEQEKSSTKTGLLTMFSCLDDSTFST------SEHSIEIGCIKSNIQTRKSCD 1894
P+ + +QPNDGFGTILP E + V F P KA+E+RF L CKS I R F L CRAVGV PP++LSH I+F ATA+ D S A +VIN H S + TH PR+G+ D P+GPTSF F++P +P++ SP++GT+ G++CLV V F P L L+ +A L +++++SF + + K+L + R K K P + K++ + +S Q A L +F F + +PC + G+ + ++ HNTLYLE+ CP+V PS++V S G + +FG V + R + IS+QN+S + + L SLL+P GPF ++N L +SF+P ++ E L I T T+ + L+G GV + L++G + +++ K+ N S L + F + + SL S + Q +PQFL S+P Q+ +G N +G VF P+ G M+PG++++ ++FSPDH S F D+L +F+ + L L G + + +V+G D L E+L + R +E+ + L + LD F T + +++GCI++ + K D
Sbjct: 958 PKFVDVQPNDGFGTILPLETLQFCVIFQPTKAEEHRFQLTCKSEINRCFKLSCRAVGVHPPLELSHYQIKFAATALYDTSVATVYVINSHLSMSSPTHSKPRIGSEDASPMGPTSFEFLLPPDSPITISPSVGTVWPGKRCLVQVAFRPVLPEKLIRQEALPLLNKEMETKSFRKNMAP-----QRKDLHGLSFSVLRAQNRDKLFKVSVPHVLEMRKRELRPSSDEYQA----ARATLLRAFQAKFDTFVVPCVVASGDIKDRKGSEPLSFSPHNTLYLELWCPTVAPSVVVTSHKGKTIFNFGDVAVGHRSIKKISIQNVSPEDLALDFSLLNPNGPFVLLNHSSLLRAGGTQVLVLSFSPHESILAQETLDIITKRGTLTLTLMGTGVASMITCSIEGSVLNMGYVIAGESVSSGFKLQNNSLLPIKFSMHLDSLSSTRGRGQQQLPQFL--SSPSQRTEV-----------------------------VGTQNLNGQSVFSVAPVKGVMDPGKTQDFTVTFSPDHESLYFSDKLQVVLFEKKISHQIL---LKGAACQHMMFVEGGDPLDVPVESLTAIPVFDPRHREEAEE-----LRPILVTLDYIQFDTDTPAPPATRELQVGCIRTTQPSPKKPD 1553 The following BLAST results are available for this feature:
BLAST of TCONS_00059134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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