TCONS_00059133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059133
Unique NameTCONS_00059133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059133 ID=TCONS_00059133|Name=TCONS_00059133|organism=Clytia hemisphaerica|type=transcript|length=3269bp
gttcttcttttatttttagtgcttaaagaaaaagaatttaagGAATACTT
TTATGGGTTAAAATTATGTGTGGAGATAATGGAGCAGCCCCTTTCGTCCC
TGTCTACAAaaaactactcaaaaaatggttgCCCAAAAACAAACGATTAT
TCTATCAAGGTGTTGTATTGATTTTAACCTATATTACATACACATGTTAC
CATTGTGCTAAACGTCCTGTTAGTGTGGTGAAAGGTGAATTAGCACCAAA
TTGTACTAAATATCCAGATCCAAATAAAACTTGCAATGCATGGAAGCCTT
TTGATACACCGAATAGTAAAGAAATATTTGGACTGTTAGACTGTGCTTTC
TTGATGTCCTATGCATTATCTATGTTTGTCAGTGGCTACATTGCTGAGCA
TACAAATATGAGAATTTATTTAGCTTCTGGTATGATTACGACTGGTTTGT
TTACTTGCATGTTCGGAATGGCATTTTACTGGCAGATTCATCAGCTCTCT
TACTTCTTTTTGGTTCAAATTCTTACTGGAATCACACAATCAACAGGTTG
GCCATGTGTCGTTGAAGCTGTTGGATCGTGGTTTCCCGAGGGTCGCAGAG
GTTTTGTCATGGGAATATGGAATACACACGTATCCGTCGGCAATATTATA
GGGTCTGCAATCGCCGCCTCTTTCGTCAAAAGCGCCTGGGGATTATCATT
CATCATCCCAGGAGCAATGATAGCGGTCATGGGTGTGTTGAATATTGTTT
TCTTGGTGCCCGAGCCTTCTTTTGTAGACATGGAGGATGAGAACAAAAAA
GATGATGATTTGTCACAATCTGGTTCTGCAAACTTTAAACGTAAACATGA
GCGGTCGAATCTGGTCAGTCCGAATCCTTGGTCTTCTATCGATGAAGACG
ACCTGACAGCACACGAGCCACAACCTATCGGACTCTGGGGTGCTTTACGT
ATTCCTGGAGTCATTGAGTACTCCTTATGCCTATTTTTCGCCAAACTGGT
AAGCTATACTTTCTTATTTTGGTTGCCCCTTTACATTACCAATATCACTA
TTGGAGGGGTACAGTATGATGATGCTAAGGCTGCAGACTGGGCCATCCTT
TTCGATGTTGGAGGCGCTTTAGGAGGGATCACTGCTGGGTTTTTAGTTGA
CCGAACTAAAGCCCCAGGTATTATCAATGTTAGTATGTTGGTTTTGGCAG
CTCCTTGCTTATTCTTGTTTAAATTCCATGGTGAATCAAAAttatctttg
tttattttctacATGATTTTATCTGGCTTTTTTGTTAATGGTCCTTATGC
TTTGATAACTACCGCTGTGTCGGCAAGCCTTGGCACACACGAATGCTTAC
GAGGAAATACGAAAGCAATGGCTGTTGTAACCTCTATTATTGATGCTACT
GGGTCACTAGGCGCTGCTGTAGGACCGTTAATGGCAGGTGTCATTTCAGC
ACACTCGTGGGATGACGTCTTCTATATGTTgattgcttgtgacgtcattg
cCGCTGTTCTCCTAATGAGACAATTTATCACTGAAGTCAATCAGTTTCGG
CAAAAACGACAGATTGCCAATTCGGTAGTCGACCCAGATGAAAATAAACC
TTTGATTTGAGATTATTGACGATTAAATTTTAGATACATTTAttgtcaac
atgaaaaatatgagcaatctgactggctaaaaacgcgtacataaatgctg
tatttcatattgtaccgtacaaatacaagaccgcgttcgaaaaaggggtc
tggtaagcgagagatcatattttgtacTTACTTTTGCATCTTATCCCAAA
ATTTATTCTcaagaatgttttcttttttcctctcaatactcacaaaagtt
gtcaatagaatgttttgatattttaatgaccattcgAATCATTTCTGAAG
AGTCGAATGTTGATTTCACCAAAATACACGAagtgaaaaaaaagataaaa
aaagagaCACAAATGGAGAGGCtaaagtttgttgatatttttcaagttga
caaTAAACTAGTTATCACACTTTACTCGTACAATATTGGATATAATTTAT
AATAATATaagagttttctatattttctatttttctataaatatgacgaa
aaatctgaactcgaaaaatatatcccatATTCTACTCTGTACCGTGTGAT
GACTATTACATTAtgtgaaaaattttccgaagGTCAAACCAAATTTGgat
attttagaataacttttattttatttcaagatCTGGTAACAAATAAATCG
GTGGGTTTTGCGATGAATATCTTTATCAGTATCTTAGGCGTTACAACGTG
CATACTTTCATACCGTGGGGGGGGGGTAAGTAGGCGAACAGGGAATTTCT
GATGattatgaatatttttattttagctttTGTTTAGAAAGAGCCTCGTA
TGTTATATGTATGGATTAGCTTTATAAAGCTAATTCTTTTTTGAGGTTGA
CTTTAATTGAATTAAGAATGTTCCGTATTAACGGCTAACTTTCCAAAAGA
TTGCTCAACTTTCAAATTAATCGCACTAATCAAGTATCAAATTGGCAAGT
AGTGCTCAAAAACGAATTGATGTTGagtaaatttttgaaagtaCGGCagt
tatctttttaatttttttagcgaTTATGATAAATGTTGAGTGCTAATCTT
GTAGATGATAAGTAATCATATTCCTTCTAtaattttgcgcaattttttcT
CAGCATCTCTTCAAATTAAGGGtgctaaattacgtgggttacgtgcgtgt
cgtgggttcgtgggtccgtGTTAAAATGTCTCGTGGGTTTGTGGCAAAAA
GCAGAAATCATTAACAATTTCGGACCTACGGGAAAATTaagacccacgaa
cccacgagcatTAATGATCCACGAACCCACATGAATTTCTTTTGGACCCA
CGGCCAGGCATATTTCCAGGCGTTTTCTGCTACCGGATAACGGTAGGTCA
AGGGTGGTCGGTAAAGTTAGGTAGAAAATCCAGGGGGGtcctaaaatttt
taaaaaaataatccagGGGTTCACGCTTCCCAAAAAAGACCTCTAAACAC
TGGGGGTAcaaatttttctggaatagcccatttatAACATTATAGGGAGT
CAACTCACAGTATTTTCCATTGGGTTTTTAAGTCGAGGGTGctgcttttt
tttaattttcttttgtgtATTAGAAACCATGTTTTATGAATTTAATGTGT
AGTTAGTCAAAGCTTGTATTTCAAAAAGTATTAGTTTGTATTGAAAATGA
TATATTAATTTATGTAATT
Run BLAST on NCBI

transcript from alignment at scaffold_318:27593..32092-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059133 ID=TCONS_00059133|Name=TCONS_00059133|organism=Clytia hemisphaerica|type=transcript|length=4500bp|location=Sequence derived from alignment at scaffold_318:27593..32092- (Clytia hemisphaerica)
GTTCTTCTTTTATTTTTAGTGCTTAAAGAAAAAGAATTTAAGGAATACTT TTATGGGTTAAAATTATGTGTGGAGATAATGGAGCAGCCCCTTTCGTCCC TGTCTACAAAAAACTACTCAAAAAATGGTTGCCCAAAAACAAACGATTAT TCTATCAAGGTGTTGTATTGATTTTAACCTATATTACATACACATGTTAC CATTGTGCTAAACGTCCTGTTAGTGTGGTGAAAGGTGAATTAGCACCAAA TTGTACTAAATATCCAGATCCAAATAAAACTTGCAATGCATGGAAGCCTT TTGATACACCGAATAGTAAAGAAATATTTGGACTGTTAGACTGTGCTTTC TTGATGTCCTATGCATTATCTATGTTTGTCAGTGGCTACATTGCTGAGCA TACAAATATGAGAATTTATTTAGCTTCTGGTATGATTACGACTGGTTTGT TTACTTGCATGTTCGGAATGGCATTTTACTGGCAGATTCATCAGCTCTCT TACTTCTTTTTGGTTCAAATTCTTACTGGAATCACACAATCAACAGGTAA TATATTACCTTGTTTTTTATTTCGCTCTTATATAAGCCAGGTAAATTTTT TCTTAACGATGTTTGAAAGGGGTAGTCTAGTTTAACACGTTATCCTTTTT TCAGTTTTCATCCACAAAGCGGGTCAGGACTCTAAAAAGTGATTTGATTG TTATCATTCTGAAAATGTGAAAACAACCTCTATGAGTGGACACAGATTTT GCGCGCTTTGATTCCAAGTAATTTGATTGACAAAATGAAAAAAGAAACAT ACTATGGTGAAAGCACCTAACTTCATAAGGTCATGGATGTTAAGCATTGT CTGGTCAGGATAGTGCTTGGATGGGGGACTGCCTGGGTACTTCCGGTTTT GTGGAATTTTTTCCAAGGATTCAATTGGCGCGTAAGTGGAAGCCCAAGAA CAAAACTACGCCTCGTTAAAAAATTGCAAAACCAAACAAAAATATCTTCA AATTATAAACCAAAATACTCTACAGAAGAAATCGTCATCGATTGGGCACT AACAGATGATGATGAATGATTCATTTTTCAAATAGGCAGTCGAACTCTAT TAGCTTTAAAAAGCTAGTACAGATTTGTACACATTTTTCTACATTCTTTC GAATGTATATATACATTAAAACTAACACATAACATTAACATTAATTGATA AAAATGACGTCATTTTAATCTTTGCTGTCAAACAAAGCTAGGGTGTGCTT GTTGACATGTCGACATTTGGACACTAGGTCTGATCAACTAGCATCAAAAA GCAATTTTCCAATTCCCAAATAAAGTAAACTAGAGCTGATTTAGGTAAAA AGTACAAATCCCAATAAGAGTAAGAGTAATACTGTAATGATTTTTTTGCA GGAAACTCATTTCAACTTATTCACAGATATTTCTAATCTCAGAATAATCA TAAAAAACTAGCTATATTTATGCTTAACGTGCAAAATAAGCTTAACATGA GGATAATCTGCTCTCTATCGTATATAGAGAGGAAATTTGATTGATTGTGG CATACTCGATAAAATTCTTACTGAGCGTTTCCACAGATTTAATTTCGAAG AAAGCTGAACTGTAGTACTCACAGTAGCATCCATACTCATTAAATATTCG TTTTCTCTTTAGAATTTTGTGATGACCATGAAACAAACCCAATAAATCTA TTGAGCTACTTTATTAGACTAAATTGGTATTTTAAATTGAGCATGATAAT AAATTAAATCACTTTTTCACTCTACAGGTTGGCCATGTGTCGTTGAAGCT GTTGGATCGTGGTTTCCCGAGGGTCGCAGAGGTTTTGTCATGGGAATATG GAATACACACGTATCCGTCGGCAATATTATAGGGTCTGCAATCGCCGCCT CTTTCGTCAAAAGCGCCTGGGGATTATCATTCATCATCCCAGGAGCAATG ATAGCGGTCATGGGTGTGTTGAATATTGTTTTCTTGGTGCCCGAGCCTTC TTTTGTAGACATGGAGGATGAGAACAAAAAAGATGATGATTTGTCACAAT CTGGTTCTGCAAACTTTAAACGTAAACATGAGCGGTCGAATCTGGTCAGT CCGAATCCTTGGTCTTCTATCGATGAAGACGACCTGACAGCACACGAGCC ACAACCTATCGGACTCTGGGGTGCTTTACGTATTCCTGGAGTCATTGAGT ACTCCTTATGCCTATTTTTCGCCAAACTGGTAAGCTATACTTTCTTATTT TGGTTGCCCCTTTACATTACCAATATCACTATTGGAGGGGTACAGTATGA TGATGCTAAGGCTGCAGACTGGGCCATCCTTTTCGATGTTGGAGGCGCTT TAGGAGGGATCACTGCTGGGTTTTTAGTTGACCGAACTAAAGCCCCAGGT ATTATCAATGTTAGTATGTTGGTTTTGGCAGCTCCTTGCTTATTCTTGTT TAAATTCCATGGTGAATCAAAATTATCTTTGTTTATTTTCTACATGATTT TATCTGGCTTTTTTGTTAATGGTCCTTATGCTTTGATAACTACCGCTGTG TCGGCAAGCCTTGGCACACACGAATGCTTACGAGGAAATACGAAAGCAAT GGCTGTTGTAACCTCTATTATTGATGCTACTGGGTCACTAGGCGCTGCTG TAGGACCGTTAATGGCAGGTGTCATTTCAGCACACTCGTGGGATGACGTC TTCTATATGTTGATTGCTTGTGACGTCATTGCCGCTGTTCTCCTAATGAG ACAATTTATCACTGAAGTCAATCAGTTTCGGCAAAAACGACAGATTGCCA ATTCGGTAGTCGACCCAGATGAAAATAAACCTTTGATTTGAGATTATTGA CGATTAAATTTTAGATACATTTATTGTCAACATGAAAAATATGAGCAATC TGACTGGCTAAAAACGCGTACATAAATGCTGTATTTCATATTGTACCGTA CAAATACAAGACCGCGTTCGAAAAAGGGGTCTGGTAAGCGAGAGATCATA TTTTGTACTTACTTTTGCATCTTATCCCAAAATTTATTCTCAAGAATGTT TTCTTTTTTCCTCTCAATACTCACAAAAGTTGTCAATAGAATGTTTTGAT ATTTTAATGACCATTCGAATCATTTCTGAAGAGTCGAATGTTGATTTCAC CAAAATACACGAAGTGAAAAAAAAGATAAAAAAAGAGACACAAATGGAGA GGCTAAAGTTTGTTGATATTTTTCAAGTTGACAATAAACTAGTTATCACA CTTTACTCGTACAATATTGGATATAATTTATAATAATATAAGAGTTTTCT ATATTTTCTATTTTTCTATAAATATGACGAAAAATCTGAACTCGAAAAAT ATATCCCATATTCTACTCTGTACCGTGTGATGACTATTACATTATGTGAA AAATTTTCCGAAGGTCAAACCAAATTTGGATATTTTAGAATAACTTTTAT TTTATTTCAAGATCTGGTAACAAATAAATCGGTGGGTTTTGCGATGAATA TCTTTATCAGTATCTTAGGCGTTACAACGTGCATACTTTCATACCGTGGG GGGGGGGTAAGTAGGCGAACAGGGAATTTCTGATGATTATGAATATTTTT ATTTTAGCTTTTGTTTAGAAAGAGCCTCGTATGTTATATGTATGGATTAG CTTTATAAAGCTAATTCTTTTTTGAGGTTGACTTTAATTGAATTAAGAAT GTTCCGTATTAACGGCTAACTTTCCAAAAGATTGCTCAACTTTCAAATTA ATCGCACTAATCAAGTATCAAATTGGCAAGTAGTGCTCAAAAACGAATTG ATGTTGAGTAAATTTTTGAAAGTACGGCAGTTATCTTTTTAATTTTTTTA GCGATTATGATAAATGTTGAGTGCTAATCTTGTAGATGATAAGTAATCAT ATTCCTTCTATAATTTTGCGCAATTTTTTCTCAGCATCTCTTCAAATTAA GGGTGCTAAATTACGTGGGTTACGTGCGTGTCGTGGGTTCGTGGGTCCGT GTTAAAATGTCTCGTGGGTTTGTGGCAAAAAGCAGAAATCATTAACAATT TCGGACCTACGGGAAAATTAAGACCCACGAACCCACGAGCATTAATGATC CACGAACCCACATGAATTTCTTTTGGACCCACGGCCAGGCATATTTCCAG GCGTTTTCTGCTACCGGATAACGGTAGGTCAAGGGTGGTCGGTAAAGTTA GGTAGAAAATCCAGGGGGGTCCTAAAATTTTTAAAAAAATAATCCAGGGG TTCACGCTTCCCAAAAAAGACCTCTAAACACTGGGGGTACAAATTTTTCT GGAATAGCCCATTTATAACATTATAGGGAGTCAACTCACAGTATTTTCCA TTGGGTTTTTAAGTCGAGGGTGCTGCTTTTTTTTAATTTTCTTTTGTGTA TTAGAAACCATGTTTTATGAATTTAATGTGTAGTTAGTCAAAGCTTGTAT TTCAAAAAGTATTAGTTTGTATTGAAAATGATATATTAATTTATGTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037243XLOC_037243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059133-exon-scaffold_318-1575043694:31547..32092TCONS_00059133-exon-scaffold_318-1575043694:31547..32092Clytia hemisphaericaexon
TCONS_00059133-exon-scaffold_318-1575043694:27593..30315TCONS_00059133-exon-scaffold_318-1575043694:27593..30315Clytia hemisphaericaexon
TCONS_00059133-exon-scaffold_318-1510915933:31547..32092TCONS_00059133-exon-scaffold_318-1510915933:31547..32092Clytia hemisphaericaexon
TCONS_00059133-exon-scaffold_318-1510915933:27593..30315TCONS_00059133-exon-scaffold_318-1510915933:27593..30315Clytia hemisphaericaexon
TCONS_00059133-exon-scaffold_318-1491911889:31547..32092TCONS_00059133-exon-scaffold_318-1491911889:31547..32092Clytia hemisphaericaexon
TCONS_00059133-exon-scaffold_318-1491911889:27593..30315TCONS_00059133-exon-scaffold_318-1491911889:27593..30315Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_318supercontigscaffold_318:27593..32092 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.438345 8.04222e-05 0 0.659032 5.79421 3.79411 3.06933 3.92682 0.527212 2.37333 0 0.796487 0 0.230459 0 1.29824 0.206014 0.539801 1.3468 0.436136 1.04715e-09 1.16222 1.2634 2.09561 2.79882 1.7022 3.46856 1.51173 5.66051 1.42496
Blast
BLAST of TCONS_00059133 vs. Swiss-Prot (Human)
Match: G6PT3 (Glucose-6-phosphate exchanger SLC37A2 OS=Homo sapiens GN=SLC37A2 PE=2 SV=2)

HSP 1 Score: 434.491 bits (1116), Expect = 1.023e-139
Identity = 228/480 (47.50%), Postives = 315/480 (65.62%), Query Frame = 3
Query:  150 FYQGVVLILTYITYTCYHCAKRPVSVVKGELAPNCTKYPDP-NKTCN-------AWKPFDTPNSKEIFGLLDCAFLMSYALSMFVSGYIAEHTNMRIYLASGMITTGLFTCMFGMAFYWQIHQLSYFFLVQILTGITQSTGWPCVVEAVGSWFPEGRRGFVMGIWNTHVSVGNIIGSAIAASFVKSAWGLSFIIPGAMIAVMGVLNIVFLVPEPSFVDMEDENKKDDDLSQSGSANFKRKHERSNLVSPNPWSSIDEDDLT---------AHEPQPIGLWGALRIPGVIEYSLCLFFAKLVSYTFLFWLPLYITNITIGGVQYDDAKAADWAILFDVGGALGGITAGFLVDRTKAPGIINVSMLVLAAPCLFLFKFHGESKLSLFIFYMILSGFFVNGPYALITTAVSASLGTHECLRGNTKAMAVVTSIIDATGSLGAAVGPLMAGVISAHSWDDVFYMLIACDVIAAVLLMRQFITEV 1538
            +++G++L+LT++ Y CYH +++P+S+VK  L  NC++   P N T +       +W PFD  N KE+ G +D AFL++YA+ MF+SG   E   +R YL++GM+ +GLFT +FG+ ++W IH+L YF ++Q+  G+ Q+TGWP VV  VG+WF +G+RGF+MGIWN+H SVGNI+GS IA  +V   WGLSFI+PG + AVMGV+  +FL+  P  VD        +      + N     +  N  SP    SI E  L            EP  I  +GALRIPGV+E+SLCL FAKLVSYTFL+WLPLYI N+      +   +A D + LFDVGG +GGI AG + D T         ML+LAAP +FL+ + G+  ++  I  +I+ G  VNGPYALITTAVSA LGTH+ L+GN KA++ VT+IID TGS+GAA+GPL+AG+IS   W++VFYMLI+ DV+A +LL R    E+
Sbjct:   20 WFRGLILLLTFLIYACYHMSRKPISIVKSRLHQNCSEQIKPINDTHSLNDTMWCSWAPFDKDNYKELLGGVDNAFLIAYAIGMFISGVFGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNGLVQTTGWPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGIWVNGQWGLSFIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEP-----AENQDNPEDPGN--SP---CSIRESGLETVAKCSKGPCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANVA----HFSAKEAGDLSTLFDVGGIIGGIVAGLVSDYTNGRATTCCVMLILAAPMMFLYNYIGQDGIASSIVMLIICGGLVNGPYALITTAVSADLGTHKSLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVFYMLISADVLACLLLCRLVYKEI 485          
The following BLAST results are available for this feature:
BLAST of TCONS_00059133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G6PT31.023e-13947.50Glucose-6-phosphate exchanger SLC37A2 OS=Homo sapi... [more]
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