TCONS_00059129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059129
Unique NameTCONS_00059129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059129 ID=TCONS_00059129|Name=TCONS_00059129|organism=Clytia hemisphaerica|type=transcript|length=291bp
GTGCATCTGACTACATAGATTACAGTGATCGTAGAAGTATTCCAATTTCA
ATTCCTGACTATAAACATGAAGAAAAGGGATCTGATAAGTTTGTGgttta
tAACATATACATATCTGGCAACTTGGTGACCTCAAAACGTTATAATGAAT
TTCACAGTCTAAACAATGAGTTAAAAAGACAGTTTCACGACTTtccattt
ccaaaatttcctgGTAAATGGCCTTTGAAACTTTCTGAAGTACAGTTGGA
TGCTCGTAGAAGACACTTAGAGACGTATCTTGAAGAAGGTA
Run BLAST on NCBI

transcript from alignment at scaffold_318:276947..279145+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059129 ID=TCONS_00059129|Name=TCONS_00059129|organism=Clytia hemisphaerica|type=transcript|length=2199bp|location=Sequence derived from alignment at scaffold_318:276947..279145+ (Clytia hemisphaerica)
GTGCATCTGACTACATAGATTACAGTGATCGTAGAAGTATTCCAATTTCA
ATTCCTGACTATAAACATGAAGAAAAGGGATCTGATAAGTTTGTGGTAAG
CTCTATTCTTTTGATAGGCTTATTTTACTTATTTGCCAGATCGGAACTCA
GGATTCTTAAGCTTTAAGAAATAGACTGATGCAATAAAGGTTCCTATTTG
AAGAAacaaactttctttaaaaagagtgataatttttttggattgGCTGG
TTTTGAGGTAGGCTCGGTCAAATGATGGCAAACCAATGAAGTCCAGCCTT
ATCACATAGCTGGGCATTAATGTTGTATTTTTAAAGTATCTTTTGTAAAT
TGGGATTTAGGAATGTATCTTGTATCTTGTTCATCACTAATatgagtttg
aatttttttttttcaggtttatAACATATACATATCTGGCAACTTGGTGA
CCTCAAAACGTTATAATGAATTTCACAGTCTAAACAATGAGGTGAATTAA
TTTGTGAAAAGAGTAAGATTAAAGAGTAACATACTTTAGGCGGCCAACTt
ctcgccctgcctattctaattgggAGTCAGCAGAGaattggctgtctaaa
gtcgccctcttttgacgtcaatgccatgtcttctttcaacctttttaAAG
TAACGATTTTAACTGCCAAATAGAGCTTCGATacctaatcgcacgatggg
ttattttttcttatttggcacgccctcaaagagagcaattaatcgttaat
tgcatcctgtagagagcaattaatcgttaatcacactcttcaatgatgcg
ccaatgtttacaaaaattattttaatgttttttcttacatctttttttgc
atcgaacgtttttaattgcattcgaaattcattttgtgagaaagaaaatc
aataaacaacaataaaagaaagacacagagagaagagaaaaatataaaac
tctcagtgtatttctgtaatttactttcctaaactgggaaaaagtagtgg
aaaccattgtgcgattagcttgtaatcacataataacacgtgcaattcga
atataattgcactcgtgatttctttgtttcgaattttcctcgttctttcg
gactcggaaaattaataacaaaaaaaatcactcgtgcaattatattcgaa
ttgcactcgttatcatgtgattacatatacaaatcagttttcaatctttt
ttaccaatgcagtttttggacctacctggaggtcttttaatttgaccgtt
gtccgttcgtctgttacaagcttttctcaggatcggctcgttagtttttt
ttaattttttgcactcTGGTGCAAAGTGGTGATTCCCAAAAtttgacgga
gcccgattttcgaaaaaaaaaatttttgggcaaattggtccaaaaagtgc
ctaaaaatggggtttttggactttgtgtgaaattgcttcattagtttttt
ctgattttttgcacactggtgtaaaatggtaatgcccaaaattttgcgga
gcccgattttcgaaaaaaaaaatttttgggcaaattggtccaaaaagtgc
ctaaaaatgggggttttggactttgtgtgaaattgcttcattagtttttt
ctgcttttttggacaaagatgaagggcaaggttctctaaaacgtgactga
agtagtttttttcagaaaattttttttggccgtaaaaatcagattttctt
atttggggaaattcctttttgtcatatttagggaaaaagagcatttctcg
cgattggattgatatttttttctgaatttttgtatagtgatataaaatgg
taatatgtAATGGTAATTTGGGCAGAAAAGTgcctaatgttttttttttt
ttacttttttgactaatttgagccctgatactcacggtaatttATTTAag
ctgctcactacactttcttattcccttgctatttgtcctatttttatctg
attttgatcaacaggtagttccattcagcatgttgcttgttttactTGAA
TTCTATGTTCAATGCTTTGTTCAACTTTGTGTTACAGTAAATTTCATAGA
AGTGAAATGTATTTTCTCCCAATTTTAGTTAAAAAGACAGTTTCACGACT
TtccatttccaaaatttcctgGTAAATGGCCTTTGAAACTTTCTGAAGTA
CAGTTGGATGCTCGTAGAAGACACTTAGAGACGTATCTTGAAGAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037241XLOC_037241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059129-exon-scaffold_318-1491911889:276947..277041TCONS_00059129-exon-scaffold_318-1491911889:276947..277041Clytia hemisphaericaexon
TCONS_00059129-exon-scaffold_318-1510915933:276947..277041TCONS_00059129-exon-scaffold_318-1510915933:276947..277041Clytia hemisphaericaexon
TCONS_00059129-exon-scaffold_318-1575043694:276947..277041TCONS_00059129-exon-scaffold_318-1575043694:276947..277041Clytia hemisphaericaexon
TCONS_00059129-exon-scaffold_318-1491911889:277363..277437TCONS_00059129-exon-scaffold_318-1491911889:277363..277437Clytia hemisphaericaexon
TCONS_00059129-exon-scaffold_318-1510915933:277363..277437TCONS_00059129-exon-scaffold_318-1510915933:277363..277437Clytia hemisphaericaexon
TCONS_00059129-exon-scaffold_318-1575043694:277363..277437TCONS_00059129-exon-scaffold_318-1575043694:277363..277437Clytia hemisphaericaexon
TCONS_00059129-exon-scaffold_318-1491911889:279025..279145TCONS_00059129-exon-scaffold_318-1491911889:279025..279145Clytia hemisphaericaexon
TCONS_00059129-exon-scaffold_318-1510915933:279025..279145TCONS_00059129-exon-scaffold_318-1510915933:279025..279145Clytia hemisphaericaexon
TCONS_00059129-exon-scaffold_318-1575043694:279025..279145TCONS_00059129-exon-scaffold_318-1575043694:279025..279145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_318supercontigscaffold_318:276947..279145 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00059129 vs. Swiss-Prot (Human)
Match: SNX27 (Sorting nexin-27 OS=Homo sapiens GN=SNX27 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.888e-33
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:    3 ASDYIDYSDRRSIPISIPDYKHEEKGSDKFVVYNIYISGNLVTSKRYNEFHSLNNELKRQFHDFPFPKFPGKWPLKLSEVQLDARRRHLETYLEE 287
               + DY++++++PIS+P YKH E+  +KFVVYN+Y++G  + SKRY EF  L+  LKR+F +F FP+ PGKWP  LSE QLDARRR LE YLE+
Sbjct:  151 GQSFYDYTEKQAVPISVPRYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEK 245
The following BLAST results are available for this feature:
BLAST of TCONS_00059129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNX273.888e-3354.74Sorting nexin-27 OS=Homo sapiens GN=SNX27 PE=1 SV=... [more]
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