|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059127 ID=TCONS_00059127|Name=TCONS_00059127|organism=Clytia hemisphaerica|type=transcript|length=1024bp
ATGATGAGCACCAAGAAGAAATGAATGCATCGATTGGACTATCTTTAGAA
GACCAAACGAATCAGAATGGTGATCAAGCTGATGTAGTGGACCATTTAAA
GGAGGTGAATAAAGAACAAACCGAAAAGCCAACTAAGCGCGCCAAATATG
CATCTGCTATTTGGGATGCTAACAATCGTTTTTTGACTTATCGCAGTCGT
GAGCTCTCCAAACTCAAGCTTGACGGAATGTTTAAATCGAGAACTTCAAT
AATGGTCGACGCTGCCAACTTCTCGGATTTTCTTGGAAATGTAGATCGTG
TTTTGTTAGAATGCCCAATTGAAGTATTTGAGTTTGATGATCATGAAATA
TGCCTGAGTAATATTATATGCAATACCAACAGCCATAGTATTTCAAAAGA
GACCTTCAAGAACGGTGAGATTTATGTATTCAAAAGATGTAGAAAGACCC
CAAGTTATTCAGAAAAAAGATCTTTCACCCATTTGGCGCGAGAAATGAAA
ATACTCTCTTTGGTAGGGAGACATCCTAATATTGTTTATGGTAGCGGCAT
GACATGGTACAAAAGTAACCCGTGTTTGGTTTTGTCTTATGAATCAGATT
TGACGTTGCGAAATTTCCATAAAATTCGTGATGCTAATTTAGTAATAATT
AAATCTATCATCATTGGACTAACCAAAGCCATTGCTTTTTTACAAGACAA
ACGGATTCTTCATAACATGATTGTTCCAGAAAACATTTGTTTAAAGTACA
ATGGCAAGATATACATACCCGTTCTTGTTGGATTTTCGCATGCTATTAGA
CGCGATAGTGCAAGAACTCTCACATTATATCAACAGAAGCAGTTTGACGA
GTTTATGCACATGCCACCAGAAGTACGAAAAGGAAAAGTGCCACCCTCAG
CATACTCAGACATCTATGCTTTCACAAGAATCTTAAGGGGATTCATGAAG
TATCCTAGTGTCCAAAATGTCATAACTTATGATATGATTCAAACTTTACT
TGACATACCGTTTGGATCggaact Run BLAST on NCBI protein sequence of TCONS_00059127-protein >TCONS_00059127-protein ID=TCONS_00059127-protein|Name=TCONS_00059127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
DEHQEEMNASIGLSLEDQTNQNGDQADVVDHLKEVNKEQTEKPTKRAKYA
SAIWDANNRFLTYRSRELSKLKLDGMFKSRTSIMVDAANFSDFLGNVDRV
LLECPIEVFEFDDHEICLSNIICNTNSHSISKETFKNGEIYVFKRCRKTP
SYSEKRSFTHLAREMKILSLVGRHPNIVYGSGMTWYKSNPCLVLSYESDL
TLRNFHKIRDANLVIIKSIIIGLTKAIAFLQDKRILHNMIVPENICLKYN
GKIYIPVLVGFSHAIRRDSARTLTLYQQKQFDEFMHMPPEVRKGKVPPSA
YSDIYAFTRILRGFMKYPSVQNVITYDMIQTLLDIPFGSE Run BLAST on NCBI transcript from alignment at scaffold_318:255130..256380+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059127 ID=TCONS_00059127|Name=TCONS_00059127|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at scaffold_318:255130..256380+ (Clytia hemisphaerica)
ATGATGAGCACCAAGAAGAAATGAATGCATCGATTGGACTATCTTTAGAA
GACCAAACGAATCAGGTAATTGTCTGTCCATAATACTTGTGCACTACCTG
TATTTTCGGCATCACATACTGTCGCTCTCGAATCGAGTGTACCCCTTATC
ACCCCGGATCCTGGTTTTCTATTTTCAGGAATTTTGGCCCTTTCCTAGGC
CTTTTCTAGGCATCTCGTTGACCAAATCTGACATTTGACTCAAAATTATT
TGAAAAAATAATTGATTCAACCATCTTTTACATCAACTTTAGAATGGTGA
TCAAGCTGATGTAGTGGACCATTTAAAGGAGGTGAATAAAGAACAAACCG
AAAAGCCAACTAAGCGCGCCAAATATGCATCTGCTATTTGGGATGCTAAC
AATCGTTTTTTGACTTATCGCAGTCGTGAGCTCTCCAAACTCAAGCTTGA
CGGAATGTTTAAATCGAGAACTTCAATAATGGTCGACGCTGCCAACTTCT
CGGATTTTCTTGGAAATGTAGATCGTGTTTTGTTAGAATGCCCAATTGAA
GTATTTGAGTTTGATGATCATGAAATATGCCTGAGTAATATTATATGCAA
TACCAACAGCCATAGTATTTCAAAAGAGACCTTCAAGAACGGTGAGATTT
ATGTATTCAAAAGATGTAGAAAGACCCCAAGTTATTCAGAAAAAAGATCT
TTCACCCATTTGGCGCGAGAAATGAAAATACTCTCTTTGGTAGGGAGACA
TCCTAATATTGTTTATGGTAGCGGCATGACATGGTACAAAAGTAACCCGT
GTTTGGTTTTGTCTTATGAATCAGATTTGACGTTGCGAAATTTCCATAAA
ATTCGTGATGCTAATTTAGTAATAATTAAATCTATCATCATTGGACTAAC
CAAAGCCATTGCTTTTTTACAAGACAAACGGATTCTTCATAACATGATTG
TTCCAGAAAACATTTGTTTAAAGTACAATGGCAAGATATACATACCCGTT
CTTGTTGGATTTTCGCATGCTATTAGACGCGATAGTGCAAGAACTCTCAC
ATTATATCAACAGAAGCAGTTTGACGAGTTTATGCACATGCCACCAGAAG
TACGAAAAGGAAAAGTGCCACCCTCAGCATACTCAGACATCTATGCTTTC
ACAAGAATCTTAAGGGGATTCATGAAGTATCCTAGTGTCCAAAATGTCAT
AACTTATGATATGATTCAAACTTTACTTGACATACCGTTTGGATCggaac
t Coding sequence (CDS) from alignment at scaffold_318:255130..256380+ >TCONS_00059127 ID=TCONS_00059127|Name=TCONS_00059127|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_318:255130..256380+ (Clytia hemisphaerica)
GATGAGCACCAAGAAGAAATGAATGCATCGATTGGACTATCTTTAGAAGA
CCAAACGAATCAGAATGGTGATCAAGCTGATGTAGTGGACCATTTAAAGG
AGGTGAATAAAGAACAAACCGAAAAGCCAACTAAGCGCGCCAAATATGCA
TCTGCTATTTGGGATGCTAACAATCGTTTTTTGACTTATCGCAGTCGTGA
GCTCTCCAAACTCAAGCTTGACGGAATGTTTAAATCGAGAACTTCAATAA
TGGTCGACGCTGCCAACTTCTCGGATTTTCTTGGAAATGTAGATCGTGTT
TTGTTAGAATGCCCAATTGAAGTATTTGAGTTTGATGATCATGAAATATG
CCTGAGTAATATTATATGCAATACCAACAGCCATAGTATTTCAAAAGAGA
CCTTCAAGAACGGTGAGATTTATGTATTCAAAAGATGTAGAAAGACCCCA
AGTTATTCAGAAAAAAGATCTTTCACCCATTTGGCGCGAGAAATGAAAAT
ACTCTCTTTGGTAGGGAGACATCCTAATATTGTTTATGGTAGCGGCATGA
CATGGTACAAAAGTAACCCGTGTTTGGTTTTGTCTTATGAATCAGATTTG
ACGTTGCGAAATTTCCATAAAATTCGTGATGCTAATTTAGTAATAATTAA
ATCTATCATCATTGGACTAACCAAAGCCATTGCTTTTTTACAAGACAAAC
GGATTCTTCATAACATGATTGTTCCAGAAAACATTTGTTTAAAGTACAAT
GGCAAGATATACATACCCGTTCTTGTTGGATTTTCGCATGCTATTAGACG
CGATAGTGCAAGAACTCTCACATTATATCAACAGAAGCAGTTTGACGAGT
TTATGCACATGCCACCAGAAGTACGAAAAGGAAAAGTGCCACCCTCAGCA
TACTCAGACATCTATGCTTTCACAAGAATCTTAAGGGGATTCATGAAGTA
TCCTAGTGTCCAAAATGTCATAACTTATGATATGATTCAAACTTTACTTG
ACATACCGTTTGGATCggaaGATGAGCACCAAGAAGAAATGAATGCATCG
ATTGGACTATCTTTAGAAGACCAAACGAATCAGAATGGTGATCAAGCTGA
TGTAGTGGACCATTTAAAGGAGGTGAATAAAGAACAAACCGAAAAGCCAA
CTAAGCGCGCCAAATATGCATCTGCTATTTGGGATGCTAACAATCGTTTT
TTGACTTATCGCAGTCGTGAGCTCTCCAAACTCAAGCTTGACGGAATGTT
TAAATCGAGAACTTCAATAATGGTCGACGCTGCCAACTTCTCGGATTTTC
TTGGAAATGTAGATCGTGTTTTGTTAGAATGCCCAATTGAAGTATTTGAG
TTTGATGATCATGAAATATGCCTGAGTAATATTATATGCAATACCAACAG
CCATAGTATTTCAAAAGAGACCTTCAAGAACGGTGAGATTTATGTATTCA
AAAGATGTAGAAAGACCCCAAGTTATTCAGAAAAAAGATCTTTCACCCAT
TTGGCGCGAGAAATGAAAATACTCTCTTTGGTAGGGAGACATCCTAATAT
TGTTTATGGTAGCGGCATGACATGGTACAAAAGTAACCCGTGTTTGGTTT
TGTCTTATGAATCAGATTTGACGTTGCGAAATTTCCATAAAATTCGTGAT
GCTAATTTAGTAATAATTAAATCTATCATCATTGGACTAACCAAAGCCAT
TGCTTTTTTACAAGACAAACGGATTCTTCATAACATGATTGTTCCAGAAA
ACATTTGTTTAAAGTACAATGGCAAGATATACATACCCGTTCTTGTTGGA
TTTTCGCATGCTATTAGACGCGATAGTGCAAGAACTCTCACATTATATCA
ACAGAAGCAGTTTGACGAGTTTATGCACATGCCACCAGAAGTACGAAAAG
GAAAAGTGCCACCCTCAGCATACTCAGACATCTATGCTTTCACAAGAATC
TTAAGGGGATTCATGAAGTATCCTAGTGTCCAAAATGTCATAACTTATGA
TATGATTCAAACTTTACTTGACATACCGTTTGGATCggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059127-exon-scaffold_318-1491911889:255130..255194 | TCONS_00059127-exon-scaffold_318-1491911889:255130..255194 | Clytia hemisphaerica | exon |
| TCONS_00059127-exon-scaffold_318-1510915933:255130..255194 | TCONS_00059127-exon-scaffold_318-1510915933:255130..255194 | Clytia hemisphaerica | exon |
| TCONS_00059127-exon-scaffold_318-1575043694:255130..255194 | TCONS_00059127-exon-scaffold_318-1575043694:255130..255194 | Clytia hemisphaerica | exon |
| TCONS_00059127-exon-scaffold_318-1491911889:255422..256380 | TCONS_00059127-exon-scaffold_318-1491911889:255422..256380 | Clytia hemisphaerica | exon |
| TCONS_00059127-exon-scaffold_318-1510915933:255422..256380 | TCONS_00059127-exon-scaffold_318-1510915933:255422..256380 | Clytia hemisphaerica | exon |
| TCONS_00059127-exon-scaffold_318-1575043694:255422..256380 | TCONS_00059127-exon-scaffold_318-1575043694:255422..256380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_318 | supercontig | scaffold_318:255130..256380 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006468 |
protein phosphorylation |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004672 |
protein kinase activity |
Blast
The following BLAST results are available for this feature:
|
