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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059120 ID=TCONS_00059120|Name=TCONS_00059120|organism=Clytia hemisphaerica|type=transcript|length=1465bp
tcaaaaccttatgttcttttatatagtttgctctaataaaaaaaacgtta
tgTTTGTTTTCGGTGAGCTGAAGTTTTGTTATCGGTAAAACTTTCTTCAA
TGTTCGTTTACGCCTTTTCATCTTTGAgaagatttttcgtttttcgtaaa
cttttcaaaaacgtCACGAAGAAGGTGTTAAAAAGAGCAGATCGGCCTCA
TGAATATCTCATCTTTTGAATagaatatcaaaaaactttattttccaCTT
TGATGGATATTCTATGTTCTATTTGCCGCCTTGATATATTCAGGAATAAT
TGTTGGATATTCAACTCCATATTACTTTTCATTTCAGCTAGATCATAGAA
TATTATTTTACTAGttagaaaaattccaaaaaaaaacgaaaatgccTGGG
TCCTTTCAGACTCTAGGTTTTTTACCagCTCACAAATTTAACGTTTCCCA
ACTGTCTAAAGATTTGAAGAATATGTCAATGGAGGACATACATCGTCTTA
TCAACCAGACTGGATTTCGTAAAAGACCCTCCCCGACAACAAGTCCTGAG
AAAATCGAAATAACCGCCTCAACTCAGAAAATGAACGCCACAACTTTACC
ACCCACCCATCCGACTTTACCGCCCACCCATGCGCCCTTGAAACCCATCA
AATGCTACTGTTCATCTTGCAAAAACAGCAACCACACATGTACTGCTTAC
AACGGCTGCCATTCAGCAATCAAATACCACAAATATGACGGTGAAGTGTT
GGACAAGTGGACAGGATGCATACCCGGTGGCCCCAACGACTACGACCATT
TTGTTGCAGCCGGTTTTTGTGGGATCGGTCACGCAGTGGATCTCCGCCAT
GAAGGAAAAGTGGCGTCACATACCAGCGGACCCGCAGGTCATCGTAAATT
TTACAATTGTGTGACAACGCGATGTTGTTATGGCAACTATTGCAATACCG
TTTGGCCAGAGTACCACGAACAATGTAAGTTGAGATTTTGTACTCATTTC
TTGAAGGCATACTTGGGTTATGTATGCCAAGTTGAtggttctacatctgc
aatttgagctttactaagccTTCGCTCATATATCATTCTCTCTCAatccg
gctgataatcgaagtatcgattgacacagattgacgtcaaattagCTTAG
caaagctcaaattgcagatgtagaacgataaactcggtatacattCACTC
ACCATCTGGATAAGGCTATCAATGTGTCTCACTACCATTCTGTCGATTGG
TAGTGTGAGTGTTTTGATTACATCGAAACGGACTGTGTAGTTTGAATTCC
AAACACTTCCCGTAGAGTTtTAGGGAAACGTGGTGATAGACTTTACCTTC
ACTGATACTTTGGTTTTGTCCATAAGTTAGTTGTTCCCCACTAACGGACt
aagggagcggtcataaagtatctactagaggggggtggaggatattttga
aaaatccaaaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_318:205943..208008+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059120 ID=TCONS_00059120|Name=TCONS_00059120|organism=Clytia hemisphaerica|type=transcript|length=2066bp|location=Sequence derived from alignment at scaffold_318:205943..208008+ (Clytia hemisphaerica)
tcaaaaccttatgttcttttatatagtttgctctaataaaaaaaacgtta
tgTTTGTTTTCGGTGAGCTGAAGTTTTGTTATCGGTAAAACTTTCTTCAA
TGTTCGTTTACGCCTTTTCATCTTTGAgaagatttttcgtttttcgtaaa
cttttcaaaaacgtCACGAAGAAGGTGTTAAAAAGAGCAGATCGGCCTCA
TGAATATCTCATCTTTTGAATagaatatcaaaaaactttattttccaCTT
TGATGGATATTCTATGTTCTATTTGCCGCCTTGATATATTCAGGAATAAT
TGTTGGATATTCAACTCCATATTACTTTTCATTTCAGCTAGATCATAGAA
TATTATTTTACTAGttagaaaaattccaaaaaaaaacgaaaatgccTGGG
TCCTTTCAGACTCTAGGTTTTTTACCaggtaacattttattttgtttctt
tttctttacatTGACCAAGCAATTCtcgatattcatgacgtaatctttta
tacagaaacacccgaaaaacacTGGGCGTTTCTcaccagttttgaattta
aataatGAAACTTGTGGCAAACGCCTTGTTTTTTTGCATGTTTCCGGGTA
TAAAAgatacgtcatgaatatcatgaaaaaaatcatcggttttatgacgt
aatattttcAACACTCTTCTTATCTTTTCTTTAGCTCACAAATTTAACGT
TTCCCAACTGTCTAAAGATTTGAAGAATATGTCAATGGAGGACATACATC
GTCTTATCAACCAGACTGGATTTCGTAAAAGACCCTCCCCGACAACAAGT
CCTGAGAAAATCGAAATAACCGCCTCAACTCAGAAAATGAACGCCACAAC
TTTACCACCCACCCATCCGACTTTACCGCCCACCCATGCGCCCTTGAAAC
CCATCAAATGCTACTGTTCATCTTGCAAAAACAGCAACCACACATGTACT
GCTTACAACGGCTGCCATTCAGCAATCAAATACCACAAATATGACGGTGA
AGTGTTGGACAAGTGGACAGGATGCATACCCGGTGGCCCCAACGTAAGAC
GAACACCGTATTATTGTAACAGTTGACTCTCAACTGTTTGAACTTTGTCT
GTGCAAAtctttatgaaatttcaactttcTCTTAGTTCAAGTTTAGAGTC
AAGGAGAAAAGCTTTATTCTTCGCAAATTTCTTCAAATAAAATCTCTGTT
CAGAATATAAAAATGCTACGTACAATTAATTCTGTTTAGGTATATAGTTT
GGTTTATTAGTTTGGTTATTAGTTTGGTTACAAAAATGACTGCTCTCTGC
TATTTTCTATTGTCAGGTCCTTTTTGCCCAAAGAAAGTGACAGCTGTTTA
AAAGTGATATTTCTTGTgttaaaaattctattttatagGACTACGACCAT
TTTGTTGCAGCCGGTTTTTGTGGGATCGGTCACGCAGTGGATCTCCGCCA
TGAAGGAAAAGTGGCGTCACATACCAGCGGACCCGCAGGTCATCGTAAAT
TTTACAATTGTGTGACAACGCGATGTTGTTATGGCAACTATTGCAATACC
GTTTGGCCAGAGTACCACGAACAATGTAAGTTGAGATTTTGTACTCATTT
CTTGAAGGCATACTTGGGTTATGTATGCCAAGTTGAtggttctacatctg
caatttgagctttactaagccTTCGCTCATATATCATTCTCTCTCAatcc
ggctgataatcgaagtatcgattgacacagattgacgtcaaattagCTTA
GcaaagctcaaattgcagatgtagaacgataaactcggtatacattCACT
CACCATCTGGATAAGGCTATCAATGTGTCTCACTACCATTCTGTCGATTG
GTAGTGTGAGTGTTTTGATTACATCGAAACGGACTGTGTAGTTTGAATTC
CAAACACTTCCCGTAGAGTTtTAGGGAAACGTGGTGATAGACTTTACCTT
CACTGATACTTTGGTTTTGTCCATAAGTTAGTTGTTCCCCACTAACGGAC
taagggagcggtcataaagtatctactagaggggggtggaggatattttg
aaaaatccaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059120-exon-scaffold_318-1491911889:205943..206370 | TCONS_00059120-exon-scaffold_318-1491911889:205943..206370 | Clytia hemisphaerica | exon |
| TCONS_00059120-exon-scaffold_318-1510915933:205943..206370 | TCONS_00059120-exon-scaffold_318-1510915933:205943..206370 | Clytia hemisphaerica | exon |
| TCONS_00059120-exon-scaffold_318-1575043694:205943..206370 | TCONS_00059120-exon-scaffold_318-1575043694:205943..206370 | Clytia hemisphaerica | exon |
| TCONS_00059120-exon-scaffold_318-1491911889:206627..206985 | TCONS_00059120-exon-scaffold_318-1491911889:206627..206985 | Clytia hemisphaerica | exon |
| TCONS_00059120-exon-scaffold_318-1510915933:206627..206985 | TCONS_00059120-exon-scaffold_318-1510915933:206627..206985 | Clytia hemisphaerica | exon |
| TCONS_00059120-exon-scaffold_318-1575043694:206627..206985 | TCONS_00059120-exon-scaffold_318-1575043694:206627..206985 | Clytia hemisphaerica | exon |
| TCONS_00059120-exon-scaffold_318-1491911889:207331..208008 | TCONS_00059120-exon-scaffold_318-1491911889:207331..208008 | Clytia hemisphaerica | exon |
| TCONS_00059120-exon-scaffold_318-1510915933:207331..208008 | TCONS_00059120-exon-scaffold_318-1510915933:207331..208008 | Clytia hemisphaerica | exon |
| TCONS_00059120-exon-scaffold_318-1575043694:207331..208008 | TCONS_00059120-exon-scaffold_318-1575043694:207331..208008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_318 | supercontig | scaffold_318:205943..208008 + |
Blast
The following BLAST results are available for this feature:
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