TCONS_00059120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059120
Unique NameTCONS_00059120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059120 ID=TCONS_00059120|Name=TCONS_00059120|organism=Clytia hemisphaerica|type=transcript|length=1465bp
tcaaaaccttatgttcttttatatagtttgctctaataaaaaaaacgtta
tgTTTGTTTTCGGTGAGCTGAAGTTTTGTTATCGGTAAAACTTTCTTCAA
TGTTCGTTTACGCCTTTTCATCTTTGAgaagatttttcgtttttcgtaaa
cttttcaaaaacgtCACGAAGAAGGTGTTAAAAAGAGCAGATCGGCCTCA
TGAATATCTCATCTTTTGAATagaatatcaaaaaactttattttccaCTT
TGATGGATATTCTATGTTCTATTTGCCGCCTTGATATATTCAGGAATAAT
TGTTGGATATTCAACTCCATATTACTTTTCATTTCAGCTAGATCATAGAA
TATTATTTTACTAGttagaaaaattccaaaaaaaaacgaaaatgccTGGG
TCCTTTCAGACTCTAGGTTTTTTACCagCTCACAAATTTAACGTTTCCCA
ACTGTCTAAAGATTTGAAGAATATGTCAATGGAGGACATACATCGTCTTA
TCAACCAGACTGGATTTCGTAAAAGACCCTCCCCGACAACAAGTCCTGAG
AAAATCGAAATAACCGCCTCAACTCAGAAAATGAACGCCACAACTTTACC
ACCCACCCATCCGACTTTACCGCCCACCCATGCGCCCTTGAAACCCATCA
AATGCTACTGTTCATCTTGCAAAAACAGCAACCACACATGTACTGCTTAC
AACGGCTGCCATTCAGCAATCAAATACCACAAATATGACGGTGAAGTGTT
GGACAAGTGGACAGGATGCATACCCGGTGGCCCCAACGACTACGACCATT
TTGTTGCAGCCGGTTTTTGTGGGATCGGTCACGCAGTGGATCTCCGCCAT
GAAGGAAAAGTGGCGTCACATACCAGCGGACCCGCAGGTCATCGTAAATT
TTACAATTGTGTGACAACGCGATGTTGTTATGGCAACTATTGCAATACCG
TTTGGCCAGAGTACCACGAACAATGTAAGTTGAGATTTTGTACTCATTTC
TTGAAGGCATACTTGGGTTATGTATGCCAAGTTGAtggttctacatctgc
aatttgagctttactaagccTTCGCTCATATATCATTCTCTCTCAatccg
gctgataatcgaagtatcgattgacacagattgacgtcaaattagCTTAG
caaagctcaaattgcagatgtagaacgataaactcggtatacattCACTC
ACCATCTGGATAAGGCTATCAATGTGTCTCACTACCATTCTGTCGATTGG
TAGTGTGAGTGTTTTGATTACATCGAAACGGACTGTGTAGTTTGAATTCC
AAACACTTCCCGTAGAGTTtTAGGGAAACGTGGTGATAGACTTTACCTTC
ACTGATACTTTGGTTTTGTCCATAAGTTAGTTGTTCCCCACTAACGGACt
aagggagcggtcataaagtatctactagaggggggtggaggatattttga
aaaatccaaaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_318:205943..208008+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059120 ID=TCONS_00059120|Name=TCONS_00059120|organism=Clytia hemisphaerica|type=transcript|length=2066bp|location=Sequence derived from alignment at scaffold_318:205943..208008+ (Clytia hemisphaerica)
tcaaaaccttatgttcttttatatagtttgctctaataaaaaaaacgtta tgTTTGTTTTCGGTGAGCTGAAGTTTTGTTATCGGTAAAACTTTCTTCAA TGTTCGTTTACGCCTTTTCATCTTTGAgaagatttttcgtttttcgtaaa cttttcaaaaacgtCACGAAGAAGGTGTTAAAAAGAGCAGATCGGCCTCA TGAATATCTCATCTTTTGAATagaatatcaaaaaactttattttccaCTT TGATGGATATTCTATGTTCTATTTGCCGCCTTGATATATTCAGGAATAAT TGTTGGATATTCAACTCCATATTACTTTTCATTTCAGCTAGATCATAGAA TATTATTTTACTAGttagaaaaattccaaaaaaaaacgaaaatgccTGGG TCCTTTCAGACTCTAGGTTTTTTACCaggtaacattttattttgtttctt tttctttacatTGACCAAGCAATTCtcgatattcatgacgtaatctttta tacagaaacacccgaaaaacacTGGGCGTTTCTcaccagttttgaattta aataatGAAACTTGTGGCAAACGCCTTGTTTTTTTGCATGTTTCCGGGTA TAAAAgatacgtcatgaatatcatgaaaaaaatcatcggttttatgacgt aatattttcAACACTCTTCTTATCTTTTCTTTAGCTCACAAATTTAACGT TTCCCAACTGTCTAAAGATTTGAAGAATATGTCAATGGAGGACATACATC GTCTTATCAACCAGACTGGATTTCGTAAAAGACCCTCCCCGACAACAAGT CCTGAGAAAATCGAAATAACCGCCTCAACTCAGAAAATGAACGCCACAAC TTTACCACCCACCCATCCGACTTTACCGCCCACCCATGCGCCCTTGAAAC CCATCAAATGCTACTGTTCATCTTGCAAAAACAGCAACCACACATGTACT GCTTACAACGGCTGCCATTCAGCAATCAAATACCACAAATATGACGGTGA AGTGTTGGACAAGTGGACAGGATGCATACCCGGTGGCCCCAACGTAAGAC GAACACCGTATTATTGTAACAGTTGACTCTCAACTGTTTGAACTTTGTCT GTGCAAAtctttatgaaatttcaactttcTCTTAGTTCAAGTTTAGAGTC AAGGAGAAAAGCTTTATTCTTCGCAAATTTCTTCAAATAAAATCTCTGTT CAGAATATAAAAATGCTACGTACAATTAATTCTGTTTAGGTATATAGTTT GGTTTATTAGTTTGGTTATTAGTTTGGTTACAAAAATGACTGCTCTCTGC TATTTTCTATTGTCAGGTCCTTTTTGCCCAAAGAAAGTGACAGCTGTTTA AAAGTGATATTTCTTGTgttaaaaattctattttatagGACTACGACCAT TTTGTTGCAGCCGGTTTTTGTGGGATCGGTCACGCAGTGGATCTCCGCCA TGAAGGAAAAGTGGCGTCACATACCAGCGGACCCGCAGGTCATCGTAAAT TTTACAATTGTGTGACAACGCGATGTTGTTATGGCAACTATTGCAATACC GTTTGGCCAGAGTACCACGAACAATGTAAGTTGAGATTTTGTACTCATTT CTTGAAGGCATACTTGGGTTATGTATGCCAAGTTGAtggttctacatctg caatttgagctttactaagccTTCGCTCATATATCATTCTCTCTCAatcc ggctgataatcgaagtatcgattgacacagattgacgtcaaattagCTTA GcaaagctcaaattgcagatgtagaacgataaactcggtatacattCACT CACCATCTGGATAAGGCTATCAATGTGTCTCACTACCATTCTGTCGATTG GTAGTGTGAGTGTTTTGATTACATCGAAACGGACTGTGTAGTTTGAATTC CAAACACTTCCCGTAGAGTTtTAGGGAAACGTGGTGATAGACTTTACCTT CACTGATACTTTGGTTTTGTCCATAAGTTAGTTGTTCCCCACTAACGGAC taagggagcggtcataaagtatctactagaggggggtggaggatattttg aaaaatccaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037237XLOC_037237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059120-exon-scaffold_318-1491911889:205943..206370TCONS_00059120-exon-scaffold_318-1491911889:205943..206370Clytia hemisphaericaexon
TCONS_00059120-exon-scaffold_318-1510915933:205943..206370TCONS_00059120-exon-scaffold_318-1510915933:205943..206370Clytia hemisphaericaexon
TCONS_00059120-exon-scaffold_318-1575043694:205943..206370TCONS_00059120-exon-scaffold_318-1575043694:205943..206370Clytia hemisphaericaexon
TCONS_00059120-exon-scaffold_318-1491911889:206627..206985TCONS_00059120-exon-scaffold_318-1491911889:206627..206985Clytia hemisphaericaexon
TCONS_00059120-exon-scaffold_318-1510915933:206627..206985TCONS_00059120-exon-scaffold_318-1510915933:206627..206985Clytia hemisphaericaexon
TCONS_00059120-exon-scaffold_318-1575043694:206627..206985TCONS_00059120-exon-scaffold_318-1575043694:206627..206985Clytia hemisphaericaexon
TCONS_00059120-exon-scaffold_318-1491911889:207331..208008TCONS_00059120-exon-scaffold_318-1491911889:207331..208008Clytia hemisphaericaexon
TCONS_00059120-exon-scaffold_318-1510915933:207331..208008TCONS_00059120-exon-scaffold_318-1510915933:207331..208008Clytia hemisphaericaexon
TCONS_00059120-exon-scaffold_318-1575043694:207331..208008TCONS_00059120-exon-scaffold_318-1575043694:207331..208008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_318supercontigscaffold_318:205943..208008 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.155306 0.154087 0.323523 0.325097 0.844335 0.643264 0.629377 2.0556 1.16368 2.26974 4.33434 1.26545 3.92169 4.88601 4.53016 6.32842 5.65576 5.45738 3.12298 3.32368 3.68468 8.14342 4.8076 6.77948 0.166321 1.66968 26.5025 12.5749 14.7569 18.8099
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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