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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059117 ID=TCONS_00059117|Name=TCONS_00059117|organism=Clytia hemisphaerica|type=transcript|length=2137bp
AACCTCTAAATGTTTAGACCAATCAAAAGTCATGGACAAGGTAAATATTT
ATAGCATATTTTTGAGAGCTAAGAAATGACAAGAAGGCAAGTTAGCCCTC
CTAGGGCTTGCATTGATTAATCTGCACATTTTTATGATATGGCGAATCAC
AAATTCTTGAAATTCTTTcttagataaaaatatttaaaatgactGCAGAC
CATCCAGCCGAAAAACATGAGGAAATGGATGTTATTGACCGAGCTGACCT
AGACGACCATCCAAGTGACCATTCAAGTGCAGGAAGCCCTGCCCCTTCAA
TTAGTACTGAAGATGGAAACAAAAAGGCACGCCCAAAGGCCAAACGTAAG
CGTCTATTGAAAGATGTCAATGCTCCTAAAGCGCCACTAACAGGTTATGT
TAGGTTCTTGAACGAAAAACGCGAGAAATTTCGTGAAGACCATCCTGACA
TGCCATTCCATGAGATCACCAAAGCCCTGGGACAAAAATGGTCGAGTATG
ACGCAAGAAGAAAAGCAAGATTATTTGGATCAAgcagaaaaagagaaaga
aagatATGTGAAAGAACTCGAAGGATACCAACAAACACCAGCATACAAAG
AATTTCAAGAGTTAAAGAAACGTAAAGAAGCGGAATATCAGCATTCTGAA
GAACAAGATCCTCGCCATTTACCACCAAAAATTAAACATGATTACCCTTA
CACAAATTCACCTAAGACAAACGGTGTCCCGCTACCAGCTCCAGCTCCTG
GCCCCAAACTAACCGCTGAAAACGGAACTCAAATTCCCATTTTCTCGGAA
CAGTTTCTAGAATATTCCCGAAAACGTGAATCAGATTTACGACAGTTAAG
AAAAGGAAATGCTGTTTTCGAGGAACAAAACGCCATTTTGAACAAACAAA
TAGACCACATGAAGAATGTAATGGACAgagttaaaaaagaaattatccaA
CAGGAGAACGAAAATATTTCTGTACAAAGCTACCTCGATCAGATACGCAA
GATCCTTGTTTCACGGTTTGGGAAGATCAATTTTCCAGAACATTTATCAG
CAACATTGAACAgtgaaaatgttgataataaACTAGCGCAGTTGGCAGAG
TTTTTAAATGGCTCACGTAGTACTGAGTATGGGGATCTGAAAAAGCGAGT
CCGTGACGTAATTTCTAAACTCGATTTTCCTAATATAAAAGAGTGATTAT
GCACTAAAACAGAGACAGATACCCAGGAcattttttaacagtttttaaaG
GTGCGAGCCCGATTTTTTACGGATGTAAGTATACAGATCATATTTAGCAA
TAATTAGGAATGTTATTACAGTAAGTTATTACTTAAACGAGGGACGAGAA
TTTCAACTTAAGTAAGGATGTGAAGGTCTGTAGCAAACTATGTCGTCATT
AGCTTTAATGATTGACAATTGCAAGATTATAAAATGCCAATCCTCATTGA
GACGGTTACCTAGCTCTAATACTCCTGTTTAAACACTGGTTACTTTTTGT
TCTTCGTTTTAGTAACAACTTTCATTACATAGTGTCGTAGGAAGTATTTT
GATATCTGGGGCGGGCGGGGGGTtagtgaaaaatttagaaaatttgtgAA
AAGCTGCAATATTAAGTAGGGTTCTACATTGCTGGAAAATACACAAATAT
CAATTACATTTATTGGAAAAGAATtagttaaaatattttgaaaaccatct
ttaaaaaattattagGACAAAGCCCCTCCCCTCCCCCCGGTTGCTAAGGC
ACTNGCTTTAAGAAATTATTAGGACAAAGCCCCTCCCCTCCCCCGGTTGC
TAAGGCACTGTTGTATGTTGTATACAGGATGTTGTTTTTGATAGTGTTTG
ATATAACGGTAAGAAAGTGTTTTTTAATACGATATTTATTACTGGTGTCG
TGTCGTTCTAAGTGTTTTGAAATCGCTccataaaaagtaaacaaattttA
GAGAAGGCTACAGATATGTATGTCTCTCAAGTAAATTCACGCACTTTGCA
AAGAGATTTTATATGGTGAAAAGtcgaaatcgggtgttttagagtcctca
AGGCATAAGAATATTCtgaacttgttcttattttggccatcgaagcctta
tgttgtttgtttttaccttatttgtaTTAAATTTCGT Run BLAST on NCBI protein sequence of TCONS_00059117-protein >TCONS_00059117-protein ID=TCONS_00059117-protein|Name=TCONS_00059117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MTADHPAEKHEEMDVIDRADLDDHPSDHSSAGSPAPSISTEDGNKKARPK
AKRKRLLKDVNAPKAPLTGYVRFLNEKREKFREDHPDMPFHEITKALGQK
WSSMTQEEKQDYLDQAEKEKERYVKELEGYQQTPAYKEFQELKKRKEAEY
QHSEEQDPRHLPPKIKHDYPYTNSPKTNGVPLPAPAPGPKLTAENGTQIP
IFSEQFLEYSRKRESDLRQLRKGNAVFEEQNAILNKQIDHMKNVMDRVKK
EIIQQENENISVQSYLDQIRKILVSRFGKINFPEHLSATLNSENVDNKLA
QLAEFLNGSRSTEYGDLKKRVRDVISKLDFPNIKE Run BLAST on NCBI transcript from alignment at scaffold_318:49674..62687+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059117 ID=TCONS_00059117|Name=TCONS_00059117|organism=Clytia hemisphaerica|type=transcript|length=13014bp|location=Sequence derived from alignment at scaffold_318:49674..62687+ (Clytia hemisphaerica)
AACCTCTAAATGTTTAGACCAATCAAAAGTCATGGACAAGGTAAATATTT
ATAGCATATTTTTGAGAGCTAAGAAATGACAAGAAGGCAAGTTAGCCCTC
CTAGGGCTTGCATTGATTAATCTGCACATTTTTATGATATGGCGAATCAC
AAATTCTTGAAATTCTTTcttagataaaaatatttaaaatgactGCAGAC
CATCCAGCCGAAAAACATGAGGAAATGGATGTTATTGACCGAGCTGACCT
AGACGACCATCCAAGTGACCATTCAAGTGCAGGAAGCCCTGCCCCTTCAA
TTAGTACTGAAGATGGAAACAAAAAGGCACGCCCAAAGGCCAAACGTAAG
CGTCTATTGAAAGATGTCAATGCTCCTAAAGCGCCACTAACAGGTTATGT
TAGGTTCTTGAACGAAAAACGCGAGAAATTTCGTGAAGACCATCCTGACA
TGCCATTCCATGAGATCACCAAAGCCCTGGGACAAAAATGGTCGAGTATG
ACGCAAGAAGAAAAGCAAGATTATTTGGATCAAgcagaaaaagagaaaga
aagatATGTGAAAGAACTCGAAGGTTTGTGATGTTTGATCTGGTTTGTTT
TATGTTTGTTTTATGCATCTTTGAAGAAATGTTTTCGTTTGTACAGCCAT
CGTGTAAACTCAACCACAATTAAAGATGGCCTCTACACGTGTTATCGAAT
ATTGAATCTTAGAACACGTTAATTGTTTGAACAATCAATGGAGACAAGGG
GGAGCCTCTAATCTACGAATAGCGGTGTCTGAAATACCTTGTCTACCCAT
ATTTATATCTCATCTCATCAATAACGTCATGTCCCCTCTTACCAGTAAAC
GATTTTTCATAAGATTTTTCATTGGGACCAGGAAGTGCTCAAGcggcttt
tttatttttttcgagatTTCCAGGTttaaatgctcttaaaatgttcGCAA
TCTGCTTACTTCATACTTTTTGagtcaaatttgtcaaaattgcttcattg
GATTTTGAGGTGTTATCTTTACAGGaaaaaaagaattgtttatGTTTATG
CCCAAAACTTACTATGGTTTGAATTCTAAAAAATCACTATTTTATAATGA
GCTCCTTTACTTCTACCATATCGGAAATCCAGCGTTCAAGAGCAGTGATC
TGTGTTTGAAAAAGTATACGATTTAAAAAGTTGAGATAATCAATTAAGAT
GTTGGGCAAAATTGAggcagaaaattttttttcagttaacaTCTTCATAT
TCATATTTATCATTTGTAATAGTACCTTGAACTAATTTTCATATGTTTTA
GAGCTGTATCATTCCAGAAActtgattttgtaatttttcagtCTAAAAAG
CCTTCAAATTCAAGTTTTTAGTCCCAAAAAAACAAGCCACAGCCATATCC
CTTTGAAAACACAGAATCCTGTTTTTTTTTAGCTATCAAAATTCCAAGAC
AAGCCAATAAGTGATCTAGAAAACTCATTTGGGGCATATTTCCTGGATTA
AGCAGTCCACGATTTAATTTTGGTTACGGAATGacggaaaaattttaaat
gccCTATGATTTTAAGGAAGCCTTTTTGGAATGAAATACTTGGCATGTTT
CTACCTCTTACTTAGTTCTTTGAAACCAAGCAGAAGTTTATTGCCAGTGA
AGGAAGAATGATATTTAATTAAGAAATCGATTTTGGTTACGGAATGACGG
AAGAATACCTCACGTTACTAAAATaagaattataattttttttgcctcaa
NTGGAATGACGGAAAAATACCTCACGTTACTAAAAtaagaattataaatt
tttgccTCAACCAaattatttcaaacttttttaaagcTGGTACCATAACT
TTATAAGTAAACCTAAACATTTGATCAATCTTGAAAACCTTTCTATTGAC
TTTAAATAGGGTTCTTAAGTTGaataatatctttaaagctGATTCTGTTT
CATTTCATGGGTATTGcattcaagaaaaataaaaaagtctgtTGATCTTT
TCCAAAAATCTCCTTTGATTTATGCCTAGATATTTATACattgtgaaata
ttttaaaagcaTTCAAATGGGAAaggctatttaaaaaaaaaatgtctccT
ACTTCAATTCTGAAGCTAGGGAccgcaatgattttttcaaattgttttta
gcgCATTGAAACCATGCTCATTGGAAAgagcatcaaaaaagaaaaaaaaa
tgaggggtcattcatCAAAATCGGCCAAGCCGTTCTCGAGATATGAAATT
TTCTATCTCCTGAAAATGACCCTTTTTTTGGAACGATTTTCGAGGATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTAAAACT
TATCCCATGGTTATAGGTGgtctaaaacctaaaaacaacattttggtcga
ttccaaccattttacccccgtctttcgcGGTCCCTACTGAAGCAAGCGAT
GCTCATGCTTATGGTCAGTTTAGAAAATTCAGTTCTGCAATCCAAACATA
TAATGTTCCTGTATTTTTTATCTTATCTGGTCGTCGTGCgcgattcttga
tatttttttcctcaaaattttatCTTCCTCTCGTTTTGGCGGCATTTTTG
TACACAGTTAATTCTAGATTTCGCGGTGAAATTCTTTCTCAACCCTTTTC
AATTTATCCTTAAATATTTCTGTTTGTGTGCAGGGATTACTAACGGTAAC
TCCCTCATACTTCCACAAATTTTCATCCCATTTCTCCAGGATCTTtcgtt
catttttttccaacgTACTTTAGTTTAGAATCTACCCCAAACATTTATTG
AGTCCTCTTCTTAAACACTGTTCTTAAACAATCTTTCCTGAAGCAAAAAT
CATTAtactttatttcattttaagcttttttcacatgtacgtaaaatttt
acttaagaccttgaagggTGGGAATTCCCCTAAGCTTATGTAGTGTTtta
atctgaaaaagctaattaaaattcagaaaacgcgtgtcaaaaacattcaa
actgagTGAGAAATCATTTTACGATAGACaaacaataaatataaatctac
aaatttagcggagagaaaaccggtaagtgaatttaaagaaagttgagaaa
taaatggagtgcggatagatgaagaccaaagtctggcatcaggtgtggcc
atNNtctgctactctagagtcacccgtcatctaaccaaaggttagaaagt
gttgatcaagcacaatctagaaaagaaaagatttagaaagaaagacGCAT
AATCGAAAAGTTTGAAAAGTTGGCCGAGGGCCCGGctcggcgtgccgtat
ccgagtggccgtacggtagaaaaagaagaaggaaataaGGCCTTGAAcgt
tttgaacggaaggaaaacCCACGTAAGACCCTCTTATTCAATTGAAACTG
TACGTAATGGCGGGGAATTTCCCAAAAGACAGCTTTACGAATGATTTCCT
GTAAGGTCTTAAGTAagattttacgtacatgtgaaaagagctttaaagga
ggtaaaaggttgaaattcagcctttatttttgaattcctaaagtacattt
caaataagctggcagtaaattttcaattggttgcgtattacttttgatag
attttgAATTAGATAGCGATTTCATAATTTTGGAAAGGcaatccggagtg
gaatattatgcgtataaaatgaagatgaaaaacgagaaagaaaaaaatta
gcttTTTATCTAGCAATGCTATAACCACCATTATTGGAATTGAGAAACTT
CAATCTTTGCCCATTTcagctgtgaattttttttctcgaaaaaaacAATT
CAGTCGAAAGATATTGGACACGAAAGGAGGCTAGGTAGGCTTTTCACCAC
AAAGtaaattttctgtttctttgaaaaatctggGGGCAAGTAAATTTCTG
ATAGTGTAAGGTAATTAACATatcgctaccttaattcaaaagggacGATA
ACTCGGGATACATCCTAAATCAGCTTTGCAACCAAAAAGTAGCTTTAATa
acgttttaaaaacgtttttgATTTACTTATccagtttttttcttacaagA
ACCAGTATAACAAAGTATTTAATGCTAGCACAACGGTGGAGAGATTAAAC
GTTTCAGAAACGTTTTTGATTACTCCTTcccgtttttataagaatttgtg
aacccattttttctaaaatagatTATAAATAAACACCAGTTCATGAGAAC
ATTCAGGCTTAGATttggaagaaaaataaaaatatcataaaaacaTGAAC
AGCTTGAGAAATGAAGAGATCAGTCGAATGTGCAGCCTTGGACCGTCATT
TCATTACGAAAGTATTTTCTGTATGTACTTTGCTACAATTTGCAAACCGC
AATCTCATTGTGAAAGTCTTGCGAGACTGTTCCCATTTCGTTTTAGTCTT
TCTGCCATTCGAAGTCTGTTTTTTTAGCAGATTAATCGTGGATTTTGAAA
CCAAAATACTTTTTAATAACTAATTTCATAAAAGATGATATGACGATCGG
TCAGTAAAAGTTGTTTTTGTAAAGTAAATGTTAGTTTAGAGTCTTATCAT
ATTTCTACCTCAGCAACCAGATCACAGAAAGGCAAGCGAGATGTCAGTTC
TCCGTGTCATCTTTTGTATTTTACTCTGTACGATTTGGGCAGCTATATGT
GAAACTGATGAAATCAGAGCATCTCACCAGTTGCAGGATAGGGAGAAGAC
ATCCTTGAAACCTGTTCTCTTGGAGCTCTTTTATACAAGCATCGATGCTG
GGTGTGTAGATATCATTAAGGAGCAGATATTCCCAACCTACTTGTCTCTT
TATTCTACTGGAATTCTTCGGATCAATTTGTACCCATATGGATTGACAAG
TGAAAAGCGATTATCCAACGGCACATGGTTGTTTACTTGTCCTCACGGTG
AACACCAATGTCAAATGAATTTGGTAGAAACATGTGCAATCCATCAATTG
CGTCGCAAGGCGAAGTTCGTACACTTTATCTACTGTTTAGAGCAGATGGG
AGCCAGTATCGCCAATGCTCGCTCCTGCTCTGGTATTCTGGGTATTGACT
TCCAAAAAATAATGTTATGTGCGAATAGTCGCCTTGGAAATCGACTTCAA
CACAAAATGGCAGTCAAGACAGATTCTCTGAATCCCAGTTTGGATTATAT
GCCCTGGATTTTAATTAATGGAAAACCATCAGAAGAAATTCGACTTCGCG
CATCACATGATTTAATTGGACTTATCTGTGATACGTACTCGGGTCAAAAG
CCAGACGTTTGTGGAGAACGTAGCATTATATTCAGTTGATTAGTTTTGAA
GATTTGTATGTGAACTTGCACATGATTTGAGAACTTATCCATGAACATTA
AAGCAAGGGAGGAACAAATTAAAAACTAAGACAACAGGCTGAAAAATTTC
GAATGAACATAAACAAAGAAAGATTAAGCAAGAATGTTGACTGTTTAGTC
CtagaatatttaattttagattaTAGCTGATTATAGTTatagaaatctta
aaatttatcaaaaattttgaaaggttaTTAATAAATAGTGTTAATTTTGA
TTTCCTTGCTAACGGAATTTTCCTGGGAAGATTGGCTAATGAGAGCTACT
ATGTTGTGAAAACATCCTTTGTGTGCACAGACTTGTTATAAGCAAACTaa
gttttttaaatgatcaattaggccATAGTTTTAGGtccataagatcacaa
aaacgaaTGGCGAGAATGGTTGATCATTATAAAAATTTAGTTTGCTTCTA
ACATGACTGTACACGAAGAACCTTGTTGCTCTCACTAGacgatgttttta
atcaaaattctcTATATCTGATGATTAAGTAATTTCTATTAACAACTGTC
ATTATATGCTATCGTTTGATATGACTAGACAAATCAATGTAAACATAGAT
CAAGGTAATTCGACTCCCTAGCCTTTTTTAAAGCAGATTTGATATCTGTG
ATAGATAGAAAAGTCTTACAGTTCCTTTGGTAccaaatacaaaaatgatt
AGGTGTCCGCATGAGTTGACGTCCAAACTTTACAGTTTTAATGAAAGAAG
CATTGCTGTGGACTCTTTATAGGAGAGGAAGTGTCAGACAAGCACGTGAC
AAATACGTGTTTCCTCGTGTCTCAAGTCCACGTCCGAAAACtatgtaata
agaaatagaaTAAGCACAACTTTAGCtttatataaattattttttggaac
TCACTGAAGGTCCTTTAAATCAACCATTAGGTAAGCTTTTGAGAGCCTGA
TTATGCTTCGCAAAAATACTTTTTCCTTAACATGCTTATATAATGcttat
tttgaacattttgcaTTCTTTTTTTGTAGacagttttgaaattttataag
GCTAAGCTTGTTTCCCCTGGATTATGCCTTGTTTATCCTTAAAAACATTA
TGCTTATAAACAAGTTTAGTGTAGAACACGCTTTTGTAAGAAGCAGTTAA
GTAGTTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNtaagagtaattaagaatttaattgcaaaaatg
acgttatgaactttaaaaagatgttaataatatgttgcatcaccctcttt
tagaaaaagtgcttagttttaatgggtaattaacttttttgtttttaaac
actgtccgcaaagaattgaactattttaaattttgcggaaaatttttcta
aaaagatgtgtcaaaagttattactgtttttttaagcaaaatccagatga
aaaattgaagaaaaaccactattttgaagatttcgagacaaagaagcatt
taaaaaaattttccgcaaaaatttttattgttcggtaaaatatacaccat
ctactgcgaaaaaattttcaaaatgttttttcttcgccgaaactaagctc
ttcaaagttgaaatactcttcctccaaaaagtcttcattttcttcttcat
caaattttttcaatgcaatttttgaattttcaaattcaggaatagtttgt
ctaagagaaaatgtataacatgccatagttttgttggttacatcagtcaa
aaaacacattttaaacacggcaattatgaaaaatatactatggtcagagc
ccttaaggtagAATATAAGGTGCTTTTATCGGCGAGTGCAAAGCGCCGAC
TACCTACTACTGAATACTTACTAaaaatagctcaaaacggctcgaaatta
cctttaaaatattcagcatgtttaaaataacaaaatctgtggtaaaaaaa
gttaaaagtttttcttttatcgtactttgaaaacttaaaaatattttttc
tattttattttgtttttggacctacccaggtggggtggaggtcctataaa
ttaaccttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcgttcgttcgctttcctcgtgattggctcattggtt
ttttctgattttttgcacaaagatgtgtaactataaaccctctaatgtga
cggagcccgattttcgaaaaaaacattttttgggaaaatttgggccaaaa
aacgactaaaaaacgggttttttggactttgtgaaaaattggatcgttat
ttttttctgattttttgcatgaaagtagggtaccatcataggtaaaagat
ggctcaagcagattttttcaaaaaacgcatgtttatctataagaatcact
tttAATGAGATTGATGATTTtgtgctcatgagggcttacttttgaagagt
ATGTGTGtctagacatgaaattttggttgcttggcgtgttttatagaaaa
actggccaaattcgatatttatttataagcacattatcaattacctaggt
attagcttttctcgagatttcctctttgattctttatgattttttgcaca
aagatgcataattataaaccctcgaatgtgaggGAGCCTgactttcaaac
aaaaatttttttgggcaaatttgggccaaaaaacggttaAAGAACGggct
ttttggactttgtgaaaaatcgaatcattaactttttctgattttttgca
tgaaagtagggtaccatcataggtaaaagatggctcaagtagatttttac
aaaaaattttgttggctcaaaaaacgcatgtttatctataagaatcacta
ttgataagcatacatcaatgttcttagccaaattactcaattttttaatg
agatagatgtttttttgctcacaaagtcttgcgAATGAATGAAAAGAATG
GCAACAATCGATGAaaaatccactgaaaatgctgaaaaatgtgGATCCTG
TACCGCCAATAAATGCTTCACGAATGAAATAATAAAGGATAATGATATGT
TACAATGTAGGAAATGCCAGAGATTCGTTCATTATGCTTGTTCGGAGCTT
CCCGCATACCAAATTCAGCTTTGTCTGCAATACAAAAGCCGANNNTAACA
AAGAGGAACAGCGGGCCGGTGACAAAGATTACGTGGAGGAAGTTGTAGGA
AATCGTATGGGATTAAAGATAAATGTTGTCACTGCAGAACGAATCGGTGC
TCGAAAGGATGATATGTTCAAGACGAAAAGATGGCGGCCATTGAAAGTAA
CGTTGGCcaatgaagaagacaagaaaagAATTATGGCCTCAGTCCATAAA
CTAAACGAAGATAATTTCAGTGTAACAGATGACTTATCCAAGAAAGAACG
CGAAACCATTAAAGAATGGCATGAAAAAGCTAAAGAGAAAACGAAGAATG
AGAAGGATGAATGCTGCGTATGGAAAGAGGTAGCCCTCGGGCTAAGCTCT
ACTttaagaaaatatgtaaaaagaccgttattgatgaactgtaaatttga
attagattgtttcatagaggtcaatagacctgcgaaatatactcctataa
taaaaataataaaaagtcttgaatatgaaagaatatttcaagagcatgaa
attttggtttttaaacgtgttttttataagaaacaaacgacttattttaa
tagatcgtcactatttgtattctgaatgattgtttaatggtcacgttcac
gtagatatcaattatatatgtgttaaatgcataactaggtaggtccctaa
aagtatcacttgttataaCTTTTTCCCGTGCTTTTTACAAAGTTTACAGA
CTGCATTTTTCAGACACACTTCTTCGTAGaagaggaaaatattttttatt
catttctgttttatttataagaaatgaTCAATctgaaaagttgaaatact
ttGAGTAACCCCTTGTTTCACTGGAGCTCTTGCTGGAATAGAGGTGGCTG
AGAATCGTTTGACACGTCTTcacattttattgacaaaatgaccccTTTGT
CAATAGTTCGGTGACATGGTCATTAAATTAAATATGACTCTTGTAAACTT
CATTATtgcaaaaattcttattgtcCTGAATAAGATACTTTCAGTATAGC
CAGattagaaattttcagtagACTATTGTCATggtattgacaaaatgaca
tttttgataaaaatatttacacaGTTATTGAATATAAAGCCTCCCAAACc
aattccaagaagtattttggCACCATTCAACATGATGCAGTTGCTTTTAT
TTTTATCGCGATTTTTAGTCTAAAATGATTCTGTAAAGATCTCGACATGC
TTTCCTTCCTGATATGACTTATTGATTTACAATCAGCGTGTCAagaccat
tttggaaatctcaAGCCAGGAATATTTTAATCTGCTCTCATTGGTTTAAA
CCAATGCAATATTAAGCCTGGTGTTGTTAtgttaatgttcttataaaaac
acgaTAAGAGCATTGAATGCATTATGGTGTACGAATGATGCACCTAAAAA
GTgttgtttttaaacaaaactttttttctctttatcaATTTACTTGATAA
AATACGTTGCAAAGGATCGGATATACTCCCATATACTGACCTACAAGTCC
CTTAAAATTAAgagaatttttggacctaccagGAGGTcctctataaatta
acctttgtccgttcgtctgttaccagcttttctcgagattggctcattag
ttgttaatttctgatttttggcacaaaggtgcaaaatagtGATGCCTAAA
ATGtcacggagcccgatttttgaaaaagaagttcaaaaaaaaaattcaaa
agaagctcaaaaaatgtcaaatacacCCAACATGCATTATCAGACAGTAA
AAGGCACAAGATCCTAAAAATATTgtcacccaatagtgccatccgcggAA
AAAGTCCctgcgaaatcttaaaatttcgcggataagctcaaccgcgaaat
ttaatccccgcgaaaataaaaaacttttctttgggTTTCATattaatgat
gttctaagataAATCACTCGTTTGAAAATGATTAGTATTCCACTCctgtt
tatcttttcaacaagcacaaaaccacTATTTctttcgaattctatcaaaa
gttattgccgTTTTTGTGTCTGCTGTACATTAGAAATTCACATTTCCGAC
TACCATTTAAGACATTCATTCATGATAAAGTTTTTCTCGTTCACTTTCAG
GATACCAACAAACACCAGCATACAAAGAATTTCAAGAGTTAAAGAAACGT
AAAGAAGCGGAATATCAGCATTCTGAAGAACAAGATCCTCGCCATTTACC
ACCAAAAATTAAACATGATTACCCTTACACAAATTCACCTAAGACAAACG
GTGTCCCGCTACCAGCTCCAGCTCCTGGCCCCAAACTAACCGCTGAAAAC
GGAACTCAAATTCCCATTTTCTCGGAACAGTTTCTAGAATATTCCCGAAA
ACGTGAATCAGATTTACGACAGTTAAGAAAAGGAAATGCTGTTTTCGAGG
AACAAAACGCCATTTTGAACAAACAAATAGACCACATGAAGAATGTAATG
GACAgagttaaaaaagaaattatccaACAGGAGAACGAAAATATTTCTGT
ACAAAGCTACCTCGATCAGATACGCAAGATCCTTGTTTCACGGTTTGGGA
AGATCAATTTTCCAGAACATTTATCAGCAACATTGAACAgtgaaaatgtt
gataataaACTAGCGCAGTTGGCAGAGTTTTTAAATGGCTCACGTAGTAC
TGAGTATGGGGATCTGAAAAAGCGAGTCCGTGACGTAATTTCTAAACTCG
ATTTTCCTAATATAAAAGAGTGATTATGCACTAAAACAGAGACAGATACC
CAGGAcattttttaacagtttttaaaGGTGCGAGCCCGATTTTTTACGGA
TGTAAGTATACAGATCATATTTAGCAATAATTAGGAATGTTATTACAGTA
AGTTATTACTTAAACGAGGGACGAGAATTTCAACTTAAGTAAGGATGTGA
AGGTCTGTAGCAAACTATGTCGTCATTAGCTTTAATGATTGACAATTGCA
AGATTATAAAATGCCAATCCTCATTGAGACGGTTACCTAGCTCTAATACT
CCTGTTTAAACACTGGTTACTTTTTGTTCTTCGTTTTAGTAACAACTTTC
ATTACATAGTGTCGTAGGAAGTATTTTGATATCTGGGGCGGGCGGGGGGT
tagtgaaaaatttagaaaatttgtgAAAAGCTGCAATATTAAGTAGGGTT
CTACATTGCTGGAAAATACACAAATATCAATTACATTTATTGGAAAAGAA
TtagttaaaatattttgaaaaccatctttaaaaaattattagGACAAAGC
CCCTCCCCTCCCCCCGGTTGCTAAGGCACTNGCTTTAAGAAATTATTAGG
ACAAAGCCCCTCCCCTCCCCCGGTTGCTAAGGCACTGTTGTATGTTGTAT
ACAGGATGTTGTTTTTGATAGTGTTTGATATAACGGTAAGAAAGTGTTTT
TTAATACGATATTTATTACTGGTGTCGTGTCGTTCTAAGTGTTTTGAAAT
CGCTccataaaaagtaaacaaattttAGAGAAGGCTACAGATATGTATGT
CTCTCAAGTAAATTCACGCACTTTGCAAAGAGATTTTATATGGTGAAAAG
tcgaaatcgggtgttttagagtcctcaAGGCATAAGAATATTCtgaactt
gttcttattttggccatcgaagccttatgttgtttgtttttaccttattt
gtaTTAAATTTCGT Coding sequence (CDS) from alignment at scaffold_318:49674..62687+ >TCONS_00059117 ID=TCONS_00059117|Name=TCONS_00059117|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_318:49674..62687+ (Clytia hemisphaerica)
atgactGCAGACCATCCAGCCGAAAAACATGAGGAAATGGATGTTATTGA
CCGAGCTGACCTAGACGACCATCCAAGTGACCATTCAAGTGCAGGAAGCC
CTGCCCCTTCAATTAGTACTGAAGATGGAAACAAAAAGGCACGCCCAAAG
GCCAAACGTAAGCGTCTATTGAAAGATGTCAATGCTCCTAAAGCGCCACT
AACAGGTTATGTTAGGTTCTTGAACGAAAAACGCGAGAAATTTCGTGAAG
ACCATCCTGACATGCCATTCCATGAGATCACCAAAGCCCTGGGACAAAAA
TGGTCGAGTATGACGCAAGAAGAAAAGCAAGATTATTTGGATCAAgcaga
aaaagagaaagaaagatATGTGAAAGAACTCGAAGGATACCAACAAACAC
CAGCATACAAAGAATTTCAAGAGTTAAAGAAACGTAAAGAAGCGGAATAT
CAGCATTCTGAAGAACAAGATCCTCGCCATTTACCACCAAAAATTAAACA
TGATTACCCTTACACAAATTCACCTAAGACAAACGGTGTCCCGCTACCAG
CTCCAGCTCCTGGCCCCAAACTAACCGCTGAAAACGGAACTCAAATTCCC
ATTTTCTCGGAACAGTTTCTAGAATATTCCCGAAAACGTGAATCAGATTT
ACGACAGTTAAGAAAAGGAAATGCTGTTTTCGAGGAACAAAACGCCATTT
TGAACAAACAAATAGACCACATGAAGAATGTAATGGACAgagttaaaaaa
gaaattatccaACAGGAGAACGAAAATATTTCTGTACAAAGCTACCTCGA
TCAGATACGCAAGATCCTTGTTTCACGGTTTGGGAAGATCAATTTTCCAG
AACATTTATCAGCAACATTGAACAgtgaaaatgttgataataaACTAGCG
CAGTTGGCAGAGTTTTTAAATGGCTCACGTAGTACTGAGTATGGGGATCT
GAAAAAGCGAGTCCGTGACGTAATTTCTAAACTCGATTTTCCTAATATAA
AAGAGTGAatgactGCAGACCATCCAGCCGAAAAACATGAGGAAATGGAT
GTTATTGACCGAGCTGACCTAGACGACCATCCAAGTGACCATTCAAGTGC
AGGAAGCCCTGCCCCTTCAATTAGTACTGAAGATGGAAACAAAAAGGCAC
GCCCAAAGGCCAAACGTAAGCGTCTATTGAAAGATGTCAATGCTCCTAAA
GCGCCACTAACAGGTTATGTTAGGTTCTTGAACGAAAAACGCGAGAAATT
TCGTGAAGACCATCCTGACATGCCATTCCATGAGATCACCAAAGCCCTGG
GACAAAAATGGTCGAGTATGACGCAAGAAGAAAAGCAAGATTATTTGGAT
CAAgcagaaaaagagaaagaaagatATGTGAAAGAACTCGAAGGATACCA
ACAAACACCAGCATACAAAGAATTTCAAGAGTTAAAGAAACGTAAAGAAG
CGGAATATCAGCATTCTGAAGAACAAGATCCTCGCCATTTACCACCAAAA
ATTAAACATGATTACCCTTACACAAATTCACCTAAGACAAACGGTGTCCC
GCTACCAGCTCCAGCTCCTGGCCCCAAACTAACCGCTGAAAACGGAACTC
AAATTCCCATTTTCTCGGAACAGTTTCTAGAATATTCCCGAAAACGTGAA
TCAGATTTACGACAGTTAAGAAAAGGAAATGCTGTTTTCGAGGAACAAAA
CGCCATTTTGAACAAACAAATAGACCACATGAAGAATGTAATGGACAgag
ttaaaaaagaaattatccaACAGGAGAACGAAAATATTTCTGTACAAAGC
TACCTCGATCAGATACGCAAGATCCTTGTTTCACGGTTTGGGAAGATCAA
TTTTCCAGAACATTTATCAGCAACATTGAACAgtgaaaatgttgataata
aACTAGCGCAGTTGGCAGAGTTTTTAAATGGCTCACGTAGTACTGAGTAT
GGGGATCTGAAAAAGCGAGTCCGTGACGTAATTTCTAAACTCGATTTTCC
TAATATAAAAGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059117-exon-scaffold_318-1491911889:49674..50246 | TCONS_00059117-exon-scaffold_318-1491911889:49674..50246 | Clytia hemisphaerica | exon |
| TCONS_00059117-exon-scaffold_318-1510915933:49674..50246 | TCONS_00059117-exon-scaffold_318-1510915933:49674..50246 | Clytia hemisphaerica | exon |
| TCONS_00059117-exon-scaffold_318-1575043694:49674..50246 | TCONS_00059117-exon-scaffold_318-1575043694:49674..50246 | Clytia hemisphaerica | exon |
| TCONS_00059117-exon-scaffold_318-1491911889:61124..62687 | TCONS_00059117-exon-scaffold_318-1491911889:61124..62687 | Clytia hemisphaerica | exon |
| TCONS_00059117-exon-scaffold_318-1510915933:61124..62687 | TCONS_00059117-exon-scaffold_318-1510915933:61124..62687 | Clytia hemisphaerica | exon |
| TCONS_00059117-exon-scaffold_318-1575043694:61124..62687 | TCONS_00059117-exon-scaffold_318-1575043694:61124..62687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_318 | supercontig | scaffold_318:49674..62687 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009071 | HMG_box_dom |
Blast
BLAST of TCONS_00059117 vs. Swiss-Prot (Human)
Match: HM20A (High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 1.691e-50 Identity = 102/271 (37.64%), Postives = 162/271 (59.78%), Query Frame = 3
Query: 363 DVNAPKAPLTGYVRFLNEKREKFREDHPDMPFHEITKALGQKWSSMTQEEKQDYLDQAEKEKERYVKELEGYQQTPAYKEFQELKKRKEAEYQHSEEQDPRHLPPKIKHDYPYTNSPKTNGVPLPAPAPGPKLTAENGTQIPIFSEQFLEYSRKRESDLRQLRKGNAVFEEQNAILNKQIDHMKNVMDRVKKEIIQQENENISVQSYLDQIRKILVSRFGKINFPEHLSATLNSENVDNKLAQLAEFLNGSRSTEYGDLKKRVRDVISKLD 1175
D NAPK+PLTGYVRF+NE+RE+ R P++PF EIT+ LG +WS + EEKQ YLD+A+++KERY+KELE YQ+T AYK F +K ++ + S QD + HD+ K V IPIF+E+FL +S+ RE++LRQLRK N FEE+NA L K ++ M+ +++++ ++IQ+ + N +Q +L+ +R++L S F + P T + +D+ + +L + + + + VR+V+++LD
Sbjct: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS--RKTQDRQKGKSHRQDAAR---QATHDHEKETEVKERSV----------------FDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMPLPGS-GETPTVDTIDSYMNRLHSIILAN-PQDNENFIATVREVVNRLD 346
The following BLAST results are available for this feature:
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