TCONS_00059095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059095
Unique NameTCONS_00059095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059095 ID=TCONS_00059095|Name=TCONS_00059095|organism=Clytia hemisphaerica|type=transcript|length=548bp
CAGTTGCAAAATACGTTACATTACAAAAATTCGACACTCTAACGCGGACA
TTTGAAACGATGAAAGAACTTTATACCAGAAACCAAACtataaaatgttt
tgaatttcttaCGTTATATTTCACATTATAAAGTGGGAGGACCTTTAACC
TCCGAAGGTCGGCGTGACGGATGCCTTGGTCGGAGATAATGTTTCCTTCA
GAATAAACAGCCACTGGGGGTTTTACGCTACATGCTTCGTCACAGTACAA
TTTAATTATTCCCAAGTTCTACGTAATTATAAACATATTTTCATTTGATG
AATTTGAACATGTAAAATTATTCAACAATACAAGTATATTACTTTAGAGG
ATAATAACAATAACCATGCAttctaaaaaaagtattttttatcattatta
gcTATAGCGTGATGTCAAAATTTACACAAATGACCACTGTAATACTTACC
GTAACcaaatttatatttataatgTAACATATATGTATTTCAATACAAAA
GGCGTGTTCACTGCAAGATCTATCCAATAAACTATGCCTTATGTGTCT
Run BLAST on NCBI

transcript from alignment at scaffold_316:110967..111514

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059095 ID=TCONS_00059095|Name=TCONS_00059095|organism=Clytia hemisphaerica|type=transcript|length=548bp|location=Sequence derived from alignment at scaffold_316:110967..111514 (Clytia hemisphaerica)
AGACACATAAGGCATAGTTTATTGGATAGATCTTGCAGTGAACACGCCTT
TTGTATTGAAATACATATATGTTAcattataaatataaatttgGTTACGG
TAAGTATTACAGTGGTCATTTGTGTAAATTTTGACATCACGCTATAgcta
ataatgataaaaaatactttttttagaaTGCATGGTTATTGTTATTATCC
TCTAAAGTAATATACTTGTATTGTTGAATAATTTTACATGTTCAAATTCA
TCAAATGAAAATATGTTTATAATTACGTAGAACTTGGGAATAATTAAATT
GTACTGTGACGAAGCATGTAGCGTAAAACCCCCAGTGGCTGTTTATTCTG
AAGGAAACATTATCTCCGACCAAGGCATCCGTCACGCCGACCTTCGGAGG
TTAAAGGTCCTCCCACTTTATAATGTGAAATATAACGtaagaaattcaaa
acattttataGTTTGGTTTCTGGTATAAAGTTCTTTCATCGTTTCAAATG
TCCGCGTTAGAGTGTCGAATTTTTGTAATGTAACGTATTTTGCAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037214XLOC_037214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059095-exon-scaffold_316-1491911889:110967..111514TCONS_00059095-exon-scaffold_316-1491911889:110967..111514Clytia hemisphaericaexon
TCONS_00059095-exon-scaffold_316-1510915933:110967..111514TCONS_00059095-exon-scaffold_316-1510915933:110967..111514Clytia hemisphaericaexon
TCONS_00059095-exon-scaffold_316-1575043694:110967..111514TCONS_00059095-exon-scaffold_316-1575043694:110967..111514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:110967..111514 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.7474	1.27562	1.42117	0.876218	0	0	0.281604	0	0.4797	0.131873	0	0.519786	0.428373	0	0.319446	0.224306	0.554552	0.637405	2.03338	0.504192	0.858895	0.914471	0.315133	1.87699	0.385546	0	0.654909	0.477788	1.07974	0.667512
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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