TCONS_00059068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059068
Unique NameTCONS_00059068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059068 ID=TCONS_00059068|Name=TCONS_00059068|organism=Clytia hemisphaerica|type=transcript|length=478bp
GTCAGCTTTATTTAAACTATCAAACTCCACTTCATAACTTGATCCAATCA
ATCAACACACAAACTTTCCTTTTACCTTTTACCTTTCTCCCAGAggctga
aaattttaatttcacaaaatgaagacttttaGTGTTTTGGTTTGTCTTGC
CTTATCAACGGCTTTGATTTTTGctgAAGAAGACGGAAAAGACTCTCAAA
AATCATGTGGAGCAGCATACAAGGCCTGCAAAGTTCAATGTTATAAAGCA
TTGGAGCCTTGTAAAGCAAAGAGCAGTTTGGAGGAGAAACGAGAATGTGG
AAAGGAGGTATTCAAAAAATTCAACTGCTGGAACGATAGAAAACAATGCC
AGGCTAAAGAATGATGCGGATAGCAAAGTTTTATTGATCCAGAACTGATT
AttaacagttttgtaattttgatttgtttactAACTTTTCTTTGATTGAG
AATAAAAACAATGCCTTTATCACAGATA
Run BLAST on NCBI

transcript from alignment at scaffold_316:88424..90490-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059068 ID=TCONS_00059068|Name=TCONS_00059068|organism=Clytia hemisphaerica|type=transcript|length=2067bp|location=Sequence derived from alignment at scaffold_316:88424..90490- (Clytia hemisphaerica)
GTCAGCTTTATTTAAACTATCAAACTCCACTTCATAACTTGATCCAATCA
ATCAACACACAAACTTTCCTTTTACCTTTTACCTTTCTCCCAGAGGCTGA
AAATTTTAATTTCACAAAATGAAGACTTTTAGTGTTTTGGTTTGTCTTGC
CTTATCAACGGCTTTGATTTTTGGTACGTATATATTGAACTTTTATATTT
TTTTCAAATATTCGACATCGCTAAAGTTTTTTCTATTGAAAACTCCCAAG
AATACCGGGCGACCATGTGCAACGGTAGAGCATCCGTCTACAGTGTGCAC
AAGTTTGTGGGTTCAACCCCCGGGTCAAATCAAAGGTTCACAAAATGGTA
CTTAATGTCTCTCTACTTGATGCTCAGCAATTAAGAGAAGGATCAAGGGC
AAGTGGAGCAATACATGGAGAAATTGTCGCCCTCCCCTACCTTTGGGTAG
ATTTATTTATTTATTTGTTCTTTATTTTACGTTGGTAATGAAAAATAGTT
ACACGTACTAATCAAATCCAACATGACACTCAAATATTTACTATATAGAT
AATAGCTATCAAAAGAGAAGCCTTCAGGTTGCACGACTTACTTATACCTA
TTTTTTCAAATAGGCTTTTTCCGGTTCTCCAATGGGAAAATGACATACTA
TCCTATAGGCATCGAAGAACTATAACGAAAAACGCAACTCTATTATACAC
TTAAAATTTGCAACTTCTTTCTGGGAATTAACGGTTATTTTCTCTCCTTA
TTCAATTTTTAGCTGAAGAAGACGGAAAAGACTCTCAAAAATCAGTAAGT
AAAATATCGCACGGGAATAGTTAGGGTAGGAGAAGAGAAAGTTGTCCCGG
GGTACTTCCCTTGCCGTCCGACGGGGGTGCTCCGCTGAGGTTCGAAAAAT
TGACCCTACGTGGGACACGTTTTTTCAAAAATTTTGCCAAAATTTGCGAG
AAAACTGACCCTGAATGGGACTAAAACTCTCAAATTTTCTCAAATTTTCT
ACTTTTTTCGCAACGCAGAAAAGGCACCCTACGAGGGACTGATTTTACTA
TTTTGGTGTTTTTGTGACCTTACCTGGGACTCGTGGAGGTTAAAAAAGGT
ACCCTGACACGCGGCGCATCCTCTTATTCCATTTTCCCCTAGTACCCCCC
CCCCCGGGAAATTTTACTCTGGAGGGGACTGAAAAAACCCCCCCCCCCCT
TTTGGGTTTTTTCCCCCCCCCCCCCCCCCGGGAAATTTTACTCTGGAGGG
GACTGAAAAAACCCCCCCCCCCCTTTTGGGTTTTTTCCCCCCCCCCCCCC
CCCGGGAAATTTTTCCGTGGAAGGGACTGAAAGAACCCTCTCACCAACTT
TTTGGTCGTTCTCCTACGCAGCTCCTATTTTAATATGTTTCCGCCTTCTG
ACATAATTAGTTAACAGATTAGCTTGCTAGTCTAAGTAAAATATTTTTCC
CGTAGGGCATGTACACAGGTTTCTGTAAAGCCCAAATGGCTAGATGTCGT
GCTTTAAGCTCTTCCAAGCAAAAAAAAAAGTGAATAAAGCAAAAAATATT
GCTGCTATTGTTTTCGAAAACCCGCAAAGCTTCTTATTGCATATTGGTCA
AGCGCTGAAATTAATCTAATGTCACGTGACCTAGCCACGGCACACATTTC
AACGACACTTAGTCCTTAGGGCTTTATAAATTTATGTATGGGATGTGTAC
CCTTTTGAAGAAGAAGTGGGATGGCAAAAATAACATTATCCTACTCTTTT
TCATCTTTCAAGGACAATTGTCTTCTTTTTCTACTCCATTTCAGTGTGGA
GCAGCATACAAGGCCTGCAAAGTTCAATGTTATAAAGCATTGGAGCCTTG
TAAAGCAAAGAGCAGTTTGGAGGAGAAACGAGAATGTGGAAAGGAGGTAT
TCAAAAAATTCAACTGCTGGAACGATAGAAAACAATGCCAGGCTAAAGAA
TGATGCGGATAGCAAAGTTTTATTGATCCAGAACTGATTATTAACAGTTT
TGTAATTTTGATTTGTTTACTAACTTTTCTTTGATTGAGAATAAAAACAA
TGCCTTTATCACAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037199XLOC_037199Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059068-exon-scaffold_316-1575043694:90318..90490TCONS_00059068-exon-scaffold_316-1575043694:90318..90490Clytia hemisphaericaexon
TCONS_00059068-exon-scaffold_316-1575043694:89697..89728TCONS_00059068-exon-scaffold_316-1575043694:89697..89728Clytia hemisphaericaexon
TCONS_00059068-exon-scaffold_316-1575043694:88424..88696TCONS_00059068-exon-scaffold_316-1575043694:88424..88696Clytia hemisphaericaexon
TCONS_00059068-exon-scaffold_316-1510915933:90318..90490TCONS_00059068-exon-scaffold_316-1510915933:90318..90490Clytia hemisphaericaexon
TCONS_00059068-exon-scaffold_316-1510915933:89697..89728TCONS_00059068-exon-scaffold_316-1510915933:89697..89728Clytia hemisphaericaexon
TCONS_00059068-exon-scaffold_316-1510915933:88424..88696TCONS_00059068-exon-scaffold_316-1510915933:88424..88696Clytia hemisphaericaexon
TCONS_00059068-exon-scaffold_316-1491911889:90318..90490TCONS_00059068-exon-scaffold_316-1491911889:90318..90490Clytia hemisphaericaexon
TCONS_00059068-exon-scaffold_316-1491911889:89697..89728TCONS_00059068-exon-scaffold_316-1491911889:89697..89728Clytia hemisphaericaexon
TCONS_00059068-exon-scaffold_316-1491911889:88424..88696TCONS_00059068-exon-scaffold_316-1491911889:88424..88696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:88424..90490 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.177858	0	0.169562	0.158742	2.44506	0.825982	1.73706	0.9662	96.0471	74.3312	0.14978	0.0803685	0.39603	0.507397	210.579	191.308	3.69797	2.61232	6.9561	6.59907	4.10645	4.04404	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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