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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059067 ID=TCONS_00059067|Name=TCONS_00059067|organism=Clytia hemisphaerica|type=transcript|length=507bp
TGTTCAAATAGATACTCACGGCGAATAAGATTTCTTTACTTAGACTTTCA
TCTTCAATCTACAGTCTGCTTGAAAATGAAGctttttgtgtttttagttT
GTATTACCCTTTCTACGGCATTTTTCTTCGGcaaggaagaagaaaaggaa
ggcTCTGGTTCTGGATCTGACTCTGGCTCTGGGTCCGGCTCCGGCTCTGA
ATCTGGATCAGGAAATTCGTGTGAGGATGAATACAAAATATGTCATCAGA
AGCTCCAAAAGAAGTATAAAGCTTgtgaaaaaatcaaatctgGATGGAGA
AGATTTATTTGTCAAATGCACGTCCATCAGAATAAGGGACATTGCTGGGT
TGAGAAAAAGAAATGTCAATGGAGTTATTAAATGAACTGGCAGCAGCAAA
CCTTAGAGCTAGAGGATTTTTAAAAACTggttgtatttttcattttagac
aATTTAGATGTCTATAAGATTactgaaaattgaagaatatAGTTACAACA
CAACCAT Run BLAST on NCBI protein sequence of TCONS_00059067-protein >TCONS_00059067-protein ID=TCONS_00059067-protein|Name=TCONS_00059067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
CSNRYSRRIRFLYLDFHLQSTVCLKMKLFVFLVCITLSTAFFFGKEEEKE
GSGSGSDSGSGSGSGSESGSGNSCEDEYKICHQKLQKKYKACEKIKSGWR
RFICQMHVHQNKGHCWVEKKKCQWSY Run BLAST on NCBI transcript from alignment at scaffold_316:84226..85960- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059067 ID=TCONS_00059067|Name=TCONS_00059067|organism=Clytia hemisphaerica|type=transcript|length=1735bp|location=Sequence derived from alignment at scaffold_316:84226..85960- (Clytia hemisphaerica)
TGTTCAAATAGATACTCACGGCGAATAAGATTTCTTTACTTAGACTTTCA
TCTTCAATCTACAGTCTGCTTGAAAATGAAGCTTTTTGTGTTTTTAGTTT
GTATTACCCTTTCTACGGCATTTTTCTTCGGTAAGTCATTTTTTGTCTCA
ACTACACGTTTTTTATAAAAACATCGCGACCGTAGCATGAAGGTAGAGCA
TCTAGCTACGGTGCGCAAGGTTGTGGGTTCGATCTCCAGCCGAGTCCTAC
CAAAGATTCTCAAAATGTTACTTGATACTTCTCTCCTTGGTGCTCAACAA
TTAAGAGAAGGATTGAGGATAAGTGGAAAAGTCCACGGAGTGGCGCCCTC
CCCTAATTTCGGGTAGACCAGCTATACGCAAAGGGAGCCTTCAGGTCGCC
CTCGACTGCGGTCGCAAACTTACTTTAATTACTATAAAATCATCGAAAAG
CTTTGAAGCCTTTCGATGTTATTAACTTTTAGAGTTTCAAGCTTAAAATG
TTTTCTTAACGTTCTCATTTTCACCATTTTTTGAGTATTTTTCTCCATTT
TCGTAATGGGAGCCGCTTGATACAATCTGTTGTCATAATTACGGTGTGTT
CTATGCACGTTTTGGATCTTGCCTAAAAAGGGTTAAAGTTTCGCTTCTAG
CCCTTCGGGCTTGAAACTCAATGGTACCGGCCTCATCTAAGGACTCATAT
AAAGTAGTGCAACATATTTATAACCTCGAGCCCAAAATAATTAAATTTGA
ATTTATTTTGAGATCAATCATTGACATATCTTATTTTTGGTTCTGTGGAT
TTTAGGCAAGGAAGAAGAAAAGGAAGGCTCTGGTTCTGGATCTGACTCTG
GCTCTGGGTCCGGCTCCGGCTCTGAATCTGGATCAGGAAATTCGGTAAGT
AAAGGGTCTTTTGCATAAAAAAGGTTTAATACTTGAGCGAGAAAAGTAGT
TTTTTCTTTTTTATCTAAAATACTATGTGAAAGCGAAAATGAGCGAAACT
GATGTCCTTTGAAGATTTGACAAGGCAGAATAAACAAGAGAATTTTCAAC
AGTTATTCTCGCATGGTGCTGAAAGAGAAACACCCCCTTCTCACAGACCC
ACTGGGACTCCTTCCCACTGGAAATATTGGTCAAAATATCGTCCCCGATG
GAAAATTATTCTCCAATTTTTGTCCCCACTGAAAATAATAGAATAAACCA
ATCCTCACTGCATTTTTATGACTTAAAAACAAAAGAATTTAAATCCCCAG
CCATAAAAAATATGGGAATATCAATTTCCATCGAGTTTCAGTCCGTTATT
TTTATCCCAACTGGCTAAAAAGATCCTACCGGGTCTGCGAGGAGGGTGTG
TAGTTTTTTCTTTTGTTTAAAAATGCTTTGTAAAAGACATATGAGAAGGA
AATACGAATGATGCCCTTTAACACTTTAACTTGTTTTATTATACCAGTGT
GAGGATGAATACAAAATATGTCATCAGAAGCTCCAAAAGAAGTATAAAGC
TTGTGAAAAAATCAAATCTGGATGGAGAAGATTTATTTGTCAAATGCACG
TCCATCAGAATAAGGGACATTGCTGGGTTGAGAAAAAGAAATGTCAATGG
AGTTATTAAATGAACTGGCAGCAGCAAACCTTAGAGCTAGAGGATTTTTA
AAAACTGGTTGTATTTTTCATTTTAGACAATTTAGATGTCTATAAGATTA
CTGAAAATTGAAGAATATAGTTACAACACAACCAT Coding sequence (CDS) from alignment at scaffold_316:84226..85960- >TCONS_00059067 ID=TCONS_00059067|Name=TCONS_00059067|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_316:84226..85960- (Clytia hemisphaerica)
TGTGAGGATGAATACAAAATATGTCATCAGAAGCTCCAAAAGAAGTATAA
AGCTTGTGAAAAAATCAAATCTGGATGGAGAAGATTTATTTGTCAAATGC
ACGTCCATCAGAATAAGGGACATTGCTGGGTTGAGAAAAAGAAATGTCAA
TGGAGTTATTAAGCAAGGAAGAAGAAAAGGAAGGCTCTGGTTCTGGATCT
GACTCTGGCTCTGGGTCCGGCTCCGGCTCTGAATCTGGATCAGGAAATTC
GTGTTCAAATAGATACTCACGGCGAATAAGATTTCTTTACTTAGACTTTC
ATCTTCAATCTACAGTCTGCTTGAAAATGAAGCTTTTTGTGTTTTTAGTT
TGTATTACCCTTTCTACGGCATTTTTCTTCGTGTGAGGATGAATACAAAA
TATGTCATCAGAAGCTCCAAAAGAAGTATAAAGCTTGTGAAAAAATCAAA
TCTGGATGGAGAAGATTTATTTGTCAAATGCACGTCCATCAGAATAAGGG
ACATTGCTGGGTTGAGAAAAAGAAATGTCAATGGAGTTATTAAGCAAGGA
AGAAGAAAAGGAAGGCTCTGGTTCTGGATCTGACTCTGGCTCTGGGTCCG
GCTCCGGCTCTGAATCTGGATCAGGAAATTCGTGTTCAAATAGATACTCA
CGGCGAATAAGATTTCTTTACTTAGACTTTCATCTTCAATCTACAGTCTG
CTTGAAAATGAAGCTTTTTGTGTTTTTAGTTTGTATTACCCTTTCTACGG
CATTTTTCTTCGTGTGAGGATGAATACAAAATATGTCATCAGAAGCTCCA
AAAGAAGTATAAAGCTTGTGAAAAAATCAAATCTGGATGGAGAAGATTTA
TTTGTCAAATGCACGTCCATCAGAATAAGGGACATTGCTGGGTTGAGAAA
AAGAAATGTCAATGGAGTTATTAAGCAAGGAAGAAGAAAAGGAAGGCTCT
GGTTCTGGATCTGACTCTGGCTCTGGGTCCGGCTCCGGCTCTGAATCTGG
ATCAGGAAATTCGTGTTCAAATAGATACTCACGGCGAATAAGATTTCTTT
ACTTAGACTTTCATCTTCAATCTACAGTCTGCTTGAAAATGAAGCTTTTT
GTGTTTTTAGTTTGTATTACCCTTTCTACGGCATTTTTCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059067-exon-scaffold_316-1575043694:85831..85960 | TCONS_00059067-exon-scaffold_316-1575043694:85831..85960 | Clytia hemisphaerica | exon |
| TCONS_00059067-exon-scaffold_316-1575043694:85067..85155 | TCONS_00059067-exon-scaffold_316-1575043694:85067..85155 | Clytia hemisphaerica | exon |
| TCONS_00059067-exon-scaffold_316-1575043694:84226..84513 | TCONS_00059067-exon-scaffold_316-1575043694:84226..84513 | Clytia hemisphaerica | exon |
| TCONS_00059067-exon-scaffold_316-1510915933:85831..85960 | TCONS_00059067-exon-scaffold_316-1510915933:85831..85960 | Clytia hemisphaerica | exon |
| TCONS_00059067-exon-scaffold_316-1510915933:85067..85155 | TCONS_00059067-exon-scaffold_316-1510915933:85067..85155 | Clytia hemisphaerica | exon |
| TCONS_00059067-exon-scaffold_316-1510915933:84226..84513 | TCONS_00059067-exon-scaffold_316-1510915933:84226..84513 | Clytia hemisphaerica | exon |
| TCONS_00059067-exon-scaffold_316-1491911889:85831..85960 | TCONS_00059067-exon-scaffold_316-1491911889:85831..85960 | Clytia hemisphaerica | exon |
| TCONS_00059067-exon-scaffold_316-1491911889:85067..85155 | TCONS_00059067-exon-scaffold_316-1491911889:85067..85155 | Clytia hemisphaerica | exon |
| TCONS_00059067-exon-scaffold_316-1491911889:84226..84513 | TCONS_00059067-exon-scaffold_316-1491911889:84226..84513 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:84226..85960 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007455 | Serglycin |
Blast
The following BLAST results are available for this feature:
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