|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059059 ID=TCONS_00059059|Name=TCONS_00059059|organism=Clytia hemisphaerica|type=transcript|length=2571bpRun BLAST on NCBI transcript from alignment at scaffold_316:189343..203496+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059059 ID=TCONS_00059059|Name=TCONS_00059059|organism=Clytia hemisphaerica|type=transcript|length=14154bp|location=Sequence derived from alignment at scaffold_316:189343..203496+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00059059 vs. Swiss-Prot (Human)
Match: MCM7 (DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4) HSP 1 Score: 972.615 bits (2513), Expect = 0.000e+0 Identity = 480/723 (66.39%), Postives = 606/723 (83.82%), Query Frame = 3
Query: 99 ITMPEYAEEKDKIKRFLSEYYEDDDAGKKVFKYGEQLIHLAHREQTTLSIEIDDVQKHDEELAENILKNTRRYSRLVSDSVFDLLPDYKQREIENKDVLDVFIEHRMMMERQLHPQQPGQTNTDIYKMFPPELLRRYEVTFKHLGAQKAESIRNVKAECIGQLSVVRGIVTRCTEVKPVMSVATYTCDRCGAEAYQLINSPSFMPLVNCESQDCKTNRSGGQLYLQTRGSKFMKYQEIRIQEHSDQVPVGNIPRAMTVVAHGENTRLVVPGDHVQVTGILLPMLKQGFRALTQGLSTETFLEAHRVVKMNKSEDQEMDNDELSEEEIQMLSTEPDFYEKLSTSIAPEIYGHEDIKKAXXXXXXXXXDKNPNGMKIRGSINMCLMGDPGVAKSQLLGYIDRLAPRSQYTTGRGSSGVGLTAAVTKDTLTGEMTLEGGALVLADQGVCCIDEFDKMDDSDRTSIHEVMEQQTISIAKAGIMTTLNARVSILAAANPAFGRYNPKKTAEQNIQLPAALLSRFDLLWLIQDKPERQNDLRLAQHITYVHKNSVHPPSQYEPLDMNLMRRYIALCKEKVPTVPRELTEYIVSAYVEMRKEARHNRDMTFXXXXXXXXXXXXXXXXXXXXXXDVVEKEDVDEAMRLMEMSKASLNDDEPQAMKPQ-AKDAIYSIIRDMSGDGRSIKLNDAQQRCLTKGYTPDQFEDCLSNYQELNIWLINKARTKITFV 2264
+ + +YA EK+K+K+FL E+Y+DD+ GKK FKYG QL+ LAHREQ L +++DDV + D EL ++I +N RRY++L +D+V +LLP YK+RE+ NKDVLDV+IEHR+MME++ + PG + +P EL+RR+E+ F+ + K IR V+A+ +G+L VRGIVTR +EVKP M VATYTCD+CGAE YQ I SP+FMPL+ C SQ+C+TNRSGG+LYLQTRGS+F+K+QE+++QEHSDQVPVGNIPR++TV+ GENTR+ PGDHV VTGI LP+L+ GFR + QGL +ET+LEAHR+VKMNKSED E EL+ EE++ ++ E DFYEKL+ SIAPEIYGHED+KKALLLLLVGGVD++P GMKIRG+IN+CLMGDPGVAKSQLL YIDRLAPRSQYTTGRGSSGVGLTAAV +D+++GE+TLEGGALVLADQGVCCIDEFDKM ++DRT+IHEVMEQQTISIAKAGI+TTLNAR SILAAANPA+GRYNP+++ EQNIQLPAALLSRFDLLWLIQD+P+R NDLRLAQHITYVH++S PPSQ+EPLDM LMRRYIA+C+EK P VP L +YI +AYVEMR+EA ++D T+TSARTLLA+LRLSTALARLR+ DVVEKEDV+EA+RLMEMSK SL D+ Q + Q D I++ +R++ GRS++ ++A+QRC+++G+TP QF+ L Y+ELN+W +N +RT+ITFV
Sbjct: 1 MALKDYALEKEKVKKFLQEFYQDDELGKKQFKYGNQLVRLAHREQVALYVDLDDVAEDDPELVDSICENARRYAKLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQR--SRDPGMVRSP-QNQYPAELMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPKMVVATYTCDQCGAETYQPIQSPTFMPLIMCPSQECQTNRSGGRLYLQTRGSRFIKFQEMKMQEHSDQVPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIFLPILRTGFRQVVQGLLSETYLEAHRIVKMNKSEDDESGAGELTREELRQIAEE-DFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPPSQFEPLDMKLMRRYIAMCREKQPMVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALARLRMVDVVEKEDVNEAIRLMEMSKDSLLGDKGQTARTQRPADVIFATVRELVSGGRSVRFSEAEQRCVSRGFTPAQFQAALDEYEELNVWQVNASRTRITFV 719 The following BLAST results are available for this feature:
BLAST of TCONS_00059059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.