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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059043 ID=TCONS_00059043|Name=TCONS_00059043|organism=Clytia hemisphaerica|type=transcript|length=2524bp
AAAATACCCCGCTCAAATCAATATCGAGTATTCACATAGCCATTCGACAA
AATCATTACAAAGTTTGAGCTTCAAAGATATTCCTGACCACGTTTCAAAG
ACGATACATGAACTTTTTCAGAAAGGATATACCCCTGGATTAGCATATCG
TGAGATGATGCAAGACCTCAAGTCAAAGAGTACAGATGACCTAGATTTAC
ACCTGAAACTGGCAGACCGCTCACAAATGCCACGGAGGAGAGATTTCAAT
AATTTATATACAGATTATCATAGAAGATTGTTCGGAACCGCCAATATCaa
agaaatgtttaaaaatcttgaagAACGCATCTCTTCTTTTCAACAAAGCA
ACCCTGACAACCTCGTAAAATTACAACATTTCAATGCAGAGGAAAATGTC
CCTTTGATATTATGTATCATCACTCCATTAATGCAACGGGTTCATGAAAA
GGTTCCTACAGCGGCTGAGTTGGTCTTTATTGATTCGACATCAAATACAG
AAGAGTTCAATCTCAGAGTTTTTCTCCTGGTGACTCATACGCCAATTGGT
GTCTTACCGCTTGGAATTTTGTTTACAAGTGATGAGACAACGGATACCTT
GATCCAAGCACTTGAATTGTACTTGGCTCTGTTACCTGATTTGGCTTTCT
ATAAACGTGGAAAGCGCCGGGGACCATCCGTTTTCATGACTGACAACTGT
TCCGAATTGCGTGATGCATTGAAGAACACTTGGCCAGAATCAACCCTTTT
ACTATGTATATTTCATATTCTCCAACAAGTTTGGCGCTGGTTATTTgaca
aaaacaatggaattgcaGCTGGCGACAGACCGGGTATAATGACACAATTC
AAGAGAGTGTTGTATCAATATATCCTAAACTCTCATCTTACTTAAATGGC
TTGTATGATTATAAAACCAGTTGGGCACTTTGCTTCCGAAGAAAATTGAT
GTTAAGGGGTAATAATACAAATAATGCAGTCGAGGCTCAATTCTTAGTCC
TTAAGGACAACATCCTAAATAGAACTAAAGAAATTAATATAAAtggtttg
tttgataaaatgacaaatgaGCTCAATGAGCATTACAAAGTTAAACTTTT
AAATGTAGCCTCTGGAAGTTTCGACGGTGTTTATGCTCAACGATTCAAAC
GGAAAGAGAAGAAGAACAAAAGTGGTGGAAAGGTATTTCGGTTACCTGAT
TTAGTCAGTCAAGCGTCGTTTGCCTCTCAAATCATACAAGTTGGTCCGTC
AGTTTATAATTGTCCAAGTTTTACAAATGCCGATTCTACTTATACCATTG
ACATGGATATTGGTGTTTGTACATGTGAAGTGGGTTTAGATGGTTCAGTC
TGTAAGCACCAATACGTTGTGTGGAGTCATAAGCTTGGCAAAGGCCGAAA
TTTTTTACCCTATCTAAACGCAGAAGAGAGAAAAGGATACGCATACATCG
CTATCGGAAAATCATTACCCGATTCGTATTATGAAGGTATTCATTCGGAT
AACACCCAGCAAGCAAACAACCAAGCTGACAGTTATACCACAAATGACGC
AGTTGCAATTGAAAAGATTATTATTCAAGACCAATctgaatttcaaagaa
acagaATCGAGCAAACATCAGCCGAAGAATGCAGATCTAATCTGCGCAAA
GCAACAAAATATTTGATAACCAAAATCGACGTACGAGAGAATGATCAATC
ACTTCTCAATGGAATAATGACATTCTGTGATCGTGTTCAAAAGTATCCTA
CCTCCCGATTGACAAGCCTATTTCATTCATTTGGAAGCACTATGACAACC
AGCCGTAAAATTACCGCAAACTCTATTCTAAAGAAAGCCAAACGTGGTAA
GATTTTTGTGCAACCAGGAGCTGTTCAAAGGCGCGCATCTCTATCAGGCT
CTAGAAATGCAAGAGTTAAAGGTATACAAGTGAAAAATAATCCCTTTGTT
GGAAAGATTCCATCCAGAAAGAGACCACATGCCTTTTCGGACAACGTTAG
AAATAATGTAGCAGCACCTCACAAAGCGGGAAAAACTATGAGTACCAAAA
CGAAACACCTTTCAAAATGTAAATCTAAATCAGTTGGTAAGACCAATGAA
GAATAACACTTGAGCATATTCTTTTTTATCtaagtttgttttattttcat
tgaaagaatAGCATTCGTTACGAAAATATTTACATTAAAGTATGaactca
aaaatgttttttgttatGCCTGACCATGTTGCCCTTGCTACCAAACCTTT
TTCCACAAGCATCGCATTCGAAAGTCTTTTCGTGACTTTTTACATGTGTT
AAAAACGTTTGCTTTATACCAAATTTTTTGTTGCATATTTTACAAGTATA
ATTCTCCTCATGGGTTTTCATGTGCTTCTTCATAAGATCctttgttttga
atgttttccCACAACCTTCGCTGTAACAAAATAATTCGTCCCCACATTGT
TTTTCATGGAAccgctttctttttttttgcttaaagaattTGCCACACAA
GCCACATTCGTAACCAGGCGTTTT Run BLAST on NCBI protein sequence of TCONS_00059043-protein >TCONS_00059043-protein ID=TCONS_00059043-protein|Name=TCONS_00059043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
MLRGNNTNNAVEAQFLVLKDNILNRTKEININGLFDKMTNELNEHYKVKL
LNVASGSFDGVYAQRFKRKEKKNKSGGKVFRLPDLVSQASFASQIIQVGP
SVYNCPSFTNADSTYTIDMDIGVCTCEVGLDGSVCKHQYVVWSHKLGKGR
NFLPYLNAEERKGYAYIAIGKSLPDSYYEGIHSDNTQQANNQADSYTTND
AVAIEKIIIQDQSEFQRNRIEQTSAEECRSNLRKATKYLITKIDVRENDQ
SLLNGIMTFCDRVQKYPTSRLTSLFHSFGSTMTTSRKITANSILKKAKRG
KIFVQPGAVQRRASLSGSRNARVKGIQVKNNPFVGKIPSRKRPHAFSDNV
RNNVAAPHKAGKTMSTKTKHLSKCKSKSVGKTNEE Run BLAST on NCBI transcript from alignment at scaffold_316:64527..67554+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059043 ID=TCONS_00059043|Name=TCONS_00059043|organism=Clytia hemisphaerica|type=transcript|length=3028bp|location=Sequence derived from alignment at scaffold_316:64527..67554+ (Clytia hemisphaerica)
AAAATACCCCGCTCAAATCAATATCGAGTATTCACATAGCCATTCGACAA
AATCATTACAAAGTTTGAGCTTCAAAGATATTCCTGACCACGTTTCAAAG
ACGATACATGAACTTTTTCAGAAAGGATATACCCCTGGATTAGCATATCG
TGAGATGATGCAAGACCTCAAGTCAAAGAGTACAGATGACCTAGATTTAC
ACCTGAAACTGGCAGACCGCTCACAAATGCCACGGAGGAGAGATTTCAAT
AATTTATATACAGATTATCATAGAAGATTGTTCGGAACCGCCAATATCaa
agaaatgtttaaaaatcttgaaggTATGGAAATATAATCCAAAATGTTAT
GAGTTATACCTATACATTTTTAACCTTTTAACCAATTTAGGGCATGATTG
TTGTTTAATGAATGATCCTGAAAATTGTGTCTTGATTATAGACTCGGAGT
CATTCTGACAGAAGTTTCCTAAAGGATGTACAATTGAATCTCTTAAATTC
CTATCTCTGTCTCGAGTCCAACAAGAAGCTCGATCCTCGGGTATTCTAGA
CAAAATTTGTTTctttatcttgaaatttctccatctcgaacaaatttttc
aatcttttaagAGAGAGATAGCGAGATTCCACTGTATAAAATAATAGAGT
ACTTTCAAGGATTTTGAATAGATATTTGCATCTTCTTTAGAACGCATCTC
TTCTTTTCAACAAAGCAACCCTGACAACCTCGTAAAATTACAACATTTCA
ATGCAGAGGAAAATGTCCCTTTGATATTATGTATCATCACTCCATTAATG
CAACGGGTTCATGAAAAGGCACAGTTTTACTTCTTAAAATACTTATTATT
TATATTGTAATTCAATAAAAATGGCAATAATGATAAACACATTTATAGCA
TTCTTTGATTGCATCAAGTGACTGTCTTTATGGACTTTTTCATAACTCTT
TTTAGGTTCCTACAGCGGCTGAGTTGGTCTTTATTGATTCGACATCAAAT
ACAGAAGAGTTCAATCTCAGAGTTTTTCTCCTGGTGACTCATACGCCAAT
TGGTGTCTTACCGCTTGGAATTTTGTTTACAAGTGATGAGACAACGGATA
CCTTGATCCAAGCACTTGAATTGTACTTGGCTCTGTTACCTGATTTGGCT
TTCTATAAACGTGGAAAGCGCCGGGGACCATCCGTTTTCATGACTGACAA
CTGTTCCGAATTGCGTGATGCATTGAAGAACACTTGGCCAGAATCAACCC
TTTTACTATGTATATTTCATATTCTCCAACAAGTTTGGCGCTGGTTATTT
gacaaaaacaatggaattgcaGCTGGCGACAGACCGGGTATAATGACACA
ATTCAAGAGAGTGTTGTATCAATATATCCTAAACTCTCATCTTACTTAAA
TGGCTTGTATGATTATAAAACCAGTTGGGCACTTTGCTTCCGAAGAAAAT
TGATGTTAAGGGGTAATAATACAAATAATGCAGTCGAGGCTCAATTCTTA
GTCCTTAAGGACAACATCCTAAATAGAACTAAAGAAATTAATATAAAtgg
tttgtttgataaaatgacaaatgaGCTCAATGAGCATTACAAAGTTAAAC
TTTTAAATGTAGCCTCTGGAAGTTTCGACGGTGTTTATGCTCAACGATTC
AAACGGAAAGAGAAGAAGAACAAAAGTGGTGGAAAGGTATTTCGGTTACC
TGATTTAGTCAGTCAAGCGTCGTTTGCCTCTCAAATCATACAAGTTGGTC
CGTCAGTTTATAATTGTCCAAGTTTTACAAATGCCGATTCTACTTATACC
ATTGACATGGATATTGGTGTTTGTACATGTGAAGTGGGTTTAGATGGTTC
AGTCTGTAAGCACCAATACGTTGTGTGGAGTCATAAGCTTGGCAAAGGCC
GAAATTTTTTACCCTATCTAAACGCAGAAGAGAGAAAAGGATACGCATAC
ATCGCTATCGGAAAATCATTACCCGATTCGTATTATGAAGGTATTCATTC
GGATAACACCCAGCAAGCAAACAACCAAGCTGACAGTTATACCACAAATG
ACGCAGTTGCAATTGAAAAGATTATTATTCAAGACCAATctgaatttcaa
agaaacagaATCGAGCAAACATCAGCCGAAGAATGCAGATCTAATCTGCG
CAAAGCAACAAAATATTTGATAACCAAAATCGACGTACGAGAGAATGATC
AATCACTTCTCAATGGAATAATGACATTCTGTGATCGTGTTCAAAAGTAT
CCTACCTCCCGATTGACAAGCCTATTTCATTCATTTGGAAGCACTATGAC
AACCAGCCGTAAAATTACCGCAAACTCTATTCTAAAGAAAGCCAAACGTG
GTAAGATTTTTGTGCAACCAGGAGCTGTTCAAAGGCGCGCATCTCTATCA
GGCTCTAGAAATGCAAGAGTTAAAGGTATACAAGTGAAAAATAATCCCTT
TGTTGGAAAGATTCCATCCAGAAAGAGACCACATGCCTTTTCGGACAACG
TTAGAAATAATGTAGCAGCACCTCACAAAGCGGGAAAAACTATGAGTACC
AAAACGAAACACCTTTCAAAATGTAAATCTAAATCAGTTGGTAAGACCAA
TGAAGAATAACACTTGAGCATATTCTTTTTTATCtaagtttgttttattt
tcattgaaagaatAGCATTCGTTACGAAAATATTTACATTAAAGTATGaa
ctcaaaaatgttttttgttatGCCTGACCATGTTGCCCTTGCTACCAAAC
CTTTTTCCACAAGCATCGCATTCGAAAGTCTTTTCGTGACTTTTTACATG
TGTTAAAAACGTTTGCTTTATACCAAATTTTTTGTTGCATATTTTACAAG
TATAATTCTCCTCATGGGTTTTCATGTGCTTCTTCATAAGATCctttgtt
ttgaatgttttccCACAACCTTCGCTGTAACAAAATAATTCGTCCCCACA
TTGTTTTTCATGGAAccgctttctttttttttgcttaaagaattTGCCAC
ACAAGCCACATTCGTAACCAGGCGTTTT Coding sequence (CDS) from alignment at scaffold_316:64527..67554+ >TCONS_00059043 ID=TCONS_00059043|Name=TCONS_00059043|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_316:64527..67554+ (Clytia hemisphaerica)
ATGTTAAGGGGTAATAATACAAATAATGCAGTCGAGGCTCAATTCTTAGT
CCTTAAGGACAACATCCTAAATAGAACTAAAGAAATTAATATAAAtggtt
tgtttgataaaatgacaaatgaGCTCAATGAGCATTACAAAGTTAAACTT
TTAAATGTAGCCTCTGGAAGTTTCGACGGTGTTTATGCTCAACGATTCAA
ACGGAAAGAGAAGAAGAACAAAAGTGGTGGAAAGGTATTTCGGTTACCTG
ATTTAGTCAGTCAAGCGTCGTTTGCCTCTCAAATCATACAAGTTGGTCCG
TCAGTTTATAATTGTCCAAGTTTTACAAATGCCGATTCTACTTATACCAT
TGACATGGATATTGGTGTTTGTACATGTGAAGTGGGTTTAGATGGTTCAG
TCTGTAAGCACCAATACGTTGTGTGGAGTCATAAGCTTGGCAAAGGCCGA
AATTTTTTACCCTATCTAAACGCAGAAGAGAGAAAAGGATACGCATACAT
CGCTATCGGAAAATCATTACCCGATTCGTATTATGAAGGTATTCATTCGG
ATAACACCCAGCAAGCAAACAACCAAGCTGACAGTTATACCACAAATGAC
GCAGTTGCAATTGAAAAGATTATTATTCAAGACCAATctgaatttcaaag
aaacagaATCGAGCAAACATCAGCCGAAGAATGCAGATCTAATCTGCGCA
AAGCAACAAAATATTTGATAACCAAAATCGACGTACGAGAGAATGATCAA
TCACTTCTCAATGGAATAATGACATTCTGTGATCGTGTTCAAAAGTATCC
TACCTCCCGATTGACAAGCCTATTTCATTCATTTGGAAGCACTATGACAA
CCAGCCGTAAAATTACCGCAAACTCTATTCTAAAGAAAGCCAAACGTGGT
AAGATTTTTGTGCAACCAGGAGCTGTTCAAAGGCGCGCATCTCTATCAGG
CTCTAGAAATGCAAGAGTTAAAGGTATACAAGTGAAAAATAATCCCTTTG
TTGGAAAGATTCCATCCAGAAAGAGACCACATGCCTTTTCGGACAACGTT
AGAAATAATGTAGCAGCACCTCACAAAGCGGGAAAAACTATGAGTACCAA
AACGAAACACCTTTCAAAATGTAAATCTAAATCAGTTGGTAAGACCAATG
AAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059043-exon-scaffold_316-1491911889:64527..64849 | TCONS_00059043-exon-scaffold_316-1491911889:64527..64849 | Clytia hemisphaerica | exon |
| TCONS_00059043-exon-scaffold_316-1510915933:64527..64849 | TCONS_00059043-exon-scaffold_316-1510915933:64527..64849 | Clytia hemisphaerica | exon |
| TCONS_00059043-exon-scaffold_316-1575043694:64527..64849 | TCONS_00059043-exon-scaffold_316-1575043694:64527..64849 | Clytia hemisphaerica | exon |
| TCONS_00059043-exon-scaffold_316-1491911889:65217..65344 | TCONS_00059043-exon-scaffold_316-1491911889:65217..65344 | Clytia hemisphaerica | exon |
| TCONS_00059043-exon-scaffold_316-1510915933:65217..65344 | TCONS_00059043-exon-scaffold_316-1510915933:65217..65344 | Clytia hemisphaerica | exon |
| TCONS_00059043-exon-scaffold_316-1575043694:65217..65344 | TCONS_00059043-exon-scaffold_316-1575043694:65217..65344 | Clytia hemisphaerica | exon |
| TCONS_00059043-exon-scaffold_316-1491911889:65482..67554 | TCONS_00059043-exon-scaffold_316-1491911889:65482..67554 | Clytia hemisphaerica | exon |
| TCONS_00059043-exon-scaffold_316-1510915933:65482..67554 | TCONS_00059043-exon-scaffold_316-1510915933:65482..67554 | Clytia hemisphaerica | exon |
| TCONS_00059043-exon-scaffold_316-1575043694:65482..67554 | TCONS_00059043-exon-scaffold_316-1575043694:65482..67554 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:64527..67554 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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