TCONS_00059026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059026
Unique NameTCONS_00059026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059026 ID=TCONS_00059026|Name=TCONS_00059026|organism=Clytia hemisphaerica|type=transcript|length=341bp
GCGCAGTTAGTTTTCACATAATTAGCACAACGAGCGCTATCGTAATTATA
TCGCAGATATCTTCTCCGGAACGTACCGGAGTTCCGGTGCAGACCAATTG
CCGAAAATCTACTAAATgtgttcgattacgtttgagTCTACTGTATGTTT
GAgtaacgttcgattggttcgattgattgtaaaTTACCTTCCATTGATct
tcgattatgtttgattaaGATTATGTTTGATAAGTTTGAtcgcgattaaa
ttaaatttgatcactcgactcctttagagcttttcTAGCGTGGACAGCCG
AGCGTGTAAGTAcgataccgtgaagtcgggtaacttgcatc
Run BLAST on NCBI

transcript from alignment at scaffold_315:326464..326804

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059026 ID=TCONS_00059026|Name=TCONS_00059026|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at scaffold_315:326464..326804 (Clytia hemisphaerica)
gatgcaagttacccgacttcacggtatcgTACTTACACGCTCGGCTGTCC
ACGCTAgaaaagctctaaaggagtcgagtgatcaaatttaatttaatcgc
gaTCAAACTTATCAAACATAATCttaatcaaacataatcgaagATCAATG
GAAGGTAAtttacaatcaatcgaaccaatcgaacgttacTCAAACATACA
GTAGActcaaacgtaatcgaacacATTTAGTAGATTTTCGGCAATTGGTC
TGCACCGGAACTCCGGTACGTTCCGGAGAAGATATCTGCGATATAATTAC
GATAGCGCTCGTTGTGCTAATTATGTGAAAACTAACTGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037177XLOC_037177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059026-exon-scaffold_315-1491911889:326464..326804TCONS_00059026-exon-scaffold_315-1491911889:326464..326804Clytia hemisphaericaexon
TCONS_00059026-exon-scaffold_315-1510915933:326464..326804TCONS_00059026-exon-scaffold_315-1510915933:326464..326804Clytia hemisphaericaexon
TCONS_00059026-exon-scaffold_315-1575043694:326464..326804TCONS_00059026-exon-scaffold_315-1575043694:326464..326804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:326464..326804 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.262092	0.608628	1.1909	0	0.675968	1.28897	0	0	0	1.22151	0.217973	0	0	0	0.327561	0.201764	0	0	0	0	0	0	0	0.593078	0	0	1.09487	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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