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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059020 ID=TCONS_00059020|Name=TCONS_00059020|organism=Clytia hemisphaerica|type=transcript|length=1805bp
TTTGTCATGAATAGATTAAGCAACTACGTATACAACCATAcaataaaaaa
tccaaattcaggcaacagttacctagaaatatttttaccctctGATTTGC
TGACAGTAACCCTGATTACGGACAATGAAAACCATGTGTAATTTAAGGTG
TAATTGACGTCTTTAATCAGCATGATATTCtgttttctctttgaaaaagt
aaaaagaaatatttagatCGACTTAATCTGTTGTAATTTGCAATCAATTA
CTTCAGATGAAATGACAGCAAGCTGTTGTAATTTGCAATCAATTACTTCA
GATGAAATGACAGCAAAAATAATATTGTTTATTGTATTAGAAGTTCAAAA
GTAGAAAGAGAGAGCTGCGCTGTCGAACATTCGATggctttaaaaacaaa
agaagagctTAAGAAATGGGAAGCATCGCGAAAGAGAACTTACATTCTAT
TCTGTTTCTTTCTTGGTTTGATCGGAACAGAATACTCAATCGTTGTTCCA
TCTTTGTTGACTTATTTACGTGACGTCATCAAGGTCGAGTATGAGAAGAC
ATGGTTTGCTTTGATCACCGCTGCTTATTGGATCTCATCCATGGTGAGCA
ATCTGACGATCACAAAATACGCGGATCGAACTCGCAACATAAGGAGGTGC
TTCTACGTTGGTTTTTCCATCGTCTCACTTGGAAACTTCCTGTACACAAT
CCCTCACTCCGTTGTTTTTCCGTTCGTGGGGCGATCTTTGCAAGGATTTG
CCGATGGCATGCTTTCCGTAAGTTTTGGTGAAGTGTTGAGAGTTTATCCA
GAGGATCAAGCAGTGGAGAAAATGTCATTCCTTGTATCCAGTTTTTACGC
GACTTTCCTGATGGGACCAAtgtttagtttggttttcaGCAATGTGGATA
TTCATGTCTTGGGCATCCATCTCACGGTCACAAATCTACCGACATTGATC
ATTGGGTTTCTTTGGTGGATATGTATCTTCTTGAATTGGTTGTTCGTTAG
AAATTTATCCAAAGAATATGACTTGAAAGCAGAAACTCGAAAATATGAAA
CCTCTACAGGTGAAAAGACTGTCTGCAGCAAAATCTCTACAGACGAGGAA
CCTGGTGACAACAAAGATGATCAAATGACCATCAGACGATTGTTCTCATC
CAAAGAGTTTCGGATCATTCTTTCAATCAACTTCCTCTGTGCGTACGCTG
GTGTTGGATATTATGATGCTGCGTTACCATTCATCTGCAAAAATTACTTC
GAGATGAAAGTCCAAACAGTTACCATATTGTTTGGTGCAAATGGCGTCGT
ATTCGTATTGATGTTGGTTTTCATTTTGAGAAGGATCAGCttacaaaaca
atgaaatatatATTATCATAGTTGGATTGGCAATTTTTATCATGGCAATA
CAATCAATGGCTCTTTCAGCTTTGATGAGTCAAGTTCGGAGCATCGGAAT
TTCTTTTCTTGTTCTCTACACAATAACTAACGGAATTAGCTGGTCGGTGG
AGCAGGTTTTGCTTGGAGTGGTTGTCGCAAAAATGATTCCCTCGAGACAT
CAAAGTTATACTGAAGGGATCAGGCGATCTCTTAGTTCATTGGCGTATAT
TATGGGTGGATTAGTAACGCCCTTATTAAACGAATACTTGGTGGAACAAT
TGAACTTTTTCTCTGGCATTTTATTTCTGAACGTCCTTTATTTGTTTACA
AGCGACCTCAAGTTTGAACCGCAATGGTATTGAAATCATGTTCATGGATT
TCTCATCAGAAATTTGCTattaaaattttagattttgggCTAAGTATCTG
TTANN Run BLAST on NCBI protein sequence of TCONS_00059020-protein >TCONS_00059020-protein ID=TCONS_00059020-protein|Name=TCONS_00059020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp
MALKTKEELKKWEASRKRTYILFCFFLGLIGTEYSIVVPSLLTYLRDVIK
VEYEKTWFALITAAYWISSMVSNLTITKYADRTRNIRRCFYVGFSIVSLG
NFLYTIPHSVVFPFVGRSLQGFADGMLSVSFGEVLRVYPEDQAVEKMSFL
VSSFYATFLMGPMFSLVFSNVDIHVLGIHLTVTNLPTLIIGFLWWICIFL
NWLFVRNLSKEYDLKAETRKYETSTGEKTVCSKISTDEEPGDNKDDQMTI
RRLFSSKEFRIILSINFLCAYAGVGYYDAALPFICKNYFEMKVQTVTILF
GANGVVFVLMLVFILRRISLQNNEIYIIIVGLAIFIMAIQSMALSALMSQ
VRSIGISFLVLYTITNGISWSVEQVLLGVVVAKMIPSRHQSYTEGIRRSL
SSLAYIMGGLVTPLLNEYLVEQLNFFSGILFLNVLYLFTSDLKFEPQWY Run BLAST on NCBI transcript from alignment at scaffold_315:144781..146585 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059020 ID=TCONS_00059020|Name=TCONS_00059020|organism=Clytia hemisphaerica|type=transcript|length=1805bp|location=Sequence derived from alignment at scaffold_315:144781..146585 (Clytia hemisphaerica)
NNTAACAGATACTTAGcccaaaatctaaaattttaatAGCAAATTTCTGA
TGAGAAATCCATGAACATGATTTCAATACCATTGCGGTTCAAACTTGAGG
TCGCTTGTAAACAAATAAAGGACGTTCAGAAATAAAATGCCAGAGAAAAA
GTTCAATTGTTCCACCAAGTATTCGTTTAATAAGGGCGTTACTAATCCAC
CCATAATATACGCCAATGAACTAAGAGATCGCCTGATCCCTTCAGTATAA
CTTTGATGTCTCGAGGGAATCATTTTTGCGACAACCACTCCAAGCAAAAC
CTGCTCCACCGACCAGCTAATTCCGTTAGTTATTGTGTAGAGAACAAGAA
AAGAAATTCCGATGCTCCGAACTTGACTCATCAAAGCTGAAAGAGCCATT
GATTGTATTGCCATGATAAAAATTGCCAATCCAACTATGATAATatatat
ttcattgttttgtaaGCTGATCCTTCTCAAAATGAAAACCAACATCAATA
CGAATACGACGCCATTTGCACCAAACAATATGGTAACTGTTTGGACTTTC
ATCTCGAAGTAATTTTTGCAGATGAATGGTAACGCAGCATCATAATATCC
AACACCAGCGTACGCACAGAGGAAGTTGATTGAAAGAATGATCCGAAACT
CTTTGGATGAGAACAATCGTCTGATGGTCATTTGATCATCTTTGTTGTCA
CCAGGTTCCTCGTCTGTAGAGATTTTGCTGCAGACAGTCTTTTCACCTGT
AGAGGTTTCATATTTTCGAGTTTCTGCTTTCAAGTCATATTCTTTGGATA
AATTTCTAACGAACAACCAATTCAAGAAGATACATATCCACCAAAGAAAC
CCAATGATCAATGTCGGTAGATTTGTGACCGTGAGATGGATGCCCAAGAC
ATGAATATCCACATTGCtgaaaaccaaactaaacaTTGGTCCCATCAGGA
AAGTCGCGTAAAAACTGGATACAAGGAATGACATTTTCTCCACTGCTTGA
TCCTCTGGATAAACTCTCAACACTTCACCAAAACTTACGGAAAGCATGCC
ATCGGCAAATCCTTGCAAAGATCGCCCCACGAACGGAAAAACAACGGAGT
GAGGGATTGTGTACAGGAAGTTTCCAAGTGAGACGATGGAAAAACCAACG
TAGAAGCACCTCCTTATGTTGCGAGTTCGATCCGCGTATTTTGTGATCGT
CAGATTGCTCACCATGGATGAGATCCAATAAGCAGCGGTGATCAAAGCAA
ACCATGTCTTCTCATACTCGACCTTGATGACGTCACGTAAATAAGTCAAC
AAAGATGGAACAACGATTGAGTATTCTGTTCCGATCAAACCAAGAAAGAA
ACAGAATAGAATGTAAGTTCTCTTTCGCGATGCTTCCCATTTCTTAagct
cttcttttgtttttaaagccATCGAATGTTCGACAGCGCAGCTCTCTCTT
TCTACTTTTGAACTTCTAATACAATAAACAATATTATTTTTGCTGTCATT
TCATCTGAAGTAATTGATTGCAAATTACAACAGCTTGCTGTCATTTCATC
TGAAGTAATTGATTGCAAATTACAACAGATTAAGTCGatctaaatatttc
tttttactttttcaaagagaaaacaGAATATCATGCTGATTAAAGACGTC
AATTACACCTTAAATTACACATGGTTTTCATTGTCCGTAATCAGGGTTAC
TGTCAGCAAATCagagggtaaaaatatttctaggtaactgttgcctgaat
ttggattttttattgTATGGTTGTATACGTAGTTGCTTAATCTATTCATG
ACAAA Coding sequence (CDS) from alignment at scaffold_315:144781..146585 >TCONS_00059020 ID=TCONS_00059020|Name=TCONS_00059020|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_315:144781..146585 (Clytia hemisphaerica)
TCAATACCATTGCGGTTCAAACTTGAGGTCGCTTGTAAACAAATAAAGGA
CGTTCAGAAATAAAATGCCAGAGAAAAAGTTCAATTGTTCCACCAAGTAT
TCGTTTAATAAGGGCGTTACTAATCCACCCATAATATACGCCAATGAACT
AAGAGATCGCCTGATCCCTTCAGTATAACTTTGATGTCTCGAGGGAATCA
TTTTTGCGACAACCACTCCAAGCAAAACCTGCTCCACCGACCAGCTAATT
CCGTTAGTTATTGTGTAGAGAACAAGAAAAGAAATTCCGATGCTCCGAAC
TTGACTCATCAAAGCTGAAAGAGCCATTGATTGTATTGCCATGATAAAAA
TTGCCAATCCAACTATGATAATatatatttcattgttttgtaaGCTGATC
CTTCTCAAAATGAAAACCAACATCAATACGAATACGACGCCATTTGCACC
AAACAATATGGTAACTGTTTGGACTTTCATCTCGAAGTAATTTTTGCAGA
TGAATGGTAACGCAGCATCATAATATCCAACACCAGCGTACGCACAGAGG
AAGTTGATTGAAAGAATGATCCGAAACTCTTTGGATGAGAACAATCGTCT
GATGGTCATTTGATCATCTTTGTTGTCACCAGGTTCCTCGTCTGTAGAGA
TTTTGCTGCAGACAGTCTTTTCACCTGTAGAGGTTTCATATTTTCGAGTT
TCTGCTTTCAAGTCATATTCTTTGGATAAATTTCTAACGAACAACCAATT
CAAGAAGATACATATCCACCAAAGAAACCCAATGATCAATGTCGGTAGAT
TTGTGACCGTGAGATGGATGCCCAAGACATGAATATCCACATTGCtgaaa
accaaactaaacaTTGGTCCCATCAGGAAAGTCGCGTAAAAACTGGATAC
AAGGAATGACATTTTCTCCACTGCTTGATCCTCTGGATAAACTCTCAACA
CTTCACCAAAACTTACGGAAAGCATGCCATCGGCAAATCCTTGCAAAGAT
CGCCCCACGAACGGAAAAACAACGGAGTGAGGGATTGTGTACAGGAAGTT
TCCAAGTGAGACGATGGAAAAACCAACGTAGAAGCACCTCCTTATGTTGC
GAGTTCGATCCGCGTATTTTGTGATCGTCAGATTGCTCACCATGGATGAG
ATCCAATAAGCAGCGGTGATCAAAGCAAACCATGTCTTCTCATACTCGAC
CTTGATGACGTCACGTAAATAAGTCAACAAAGATGGAACAACGATTGAGT
ATTCTGTTCCGATCAAACCAAGAAAGAAACAGAATAGAATGTAAGTTCTC
TTTCGCGATGCTTCCCATTTCTTAagctcttcttttgtttttaaagccAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059020-exon-scaffold_315-1491911889:144781..146585 | TCONS_00059020-exon-scaffold_315-1491911889:144781..146585 | Clytia hemisphaerica | exon |
| TCONS_00059020-exon-scaffold_315-1510915933:144781..146585 | TCONS_00059020-exon-scaffold_315-1510915933:144781..146585 | Clytia hemisphaerica | exon |
| TCONS_00059020-exon-scaffold_315-1575043694:144781..146585 | TCONS_00059020-exon-scaffold_315-1575043694:144781..146585 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:144781..146585 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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