TCONS_00059018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059018
Unique NameTCONS_00059018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059018 ID=TCONS_00059018|Name=TCONS_00059018|organism=Clytia hemisphaerica|type=transcript|length=806bp
tttgtaaatttcggtgaaaaaaaatttacatatttcgcgggaattaactT
TCGGGAATGATTCGAAACCGcatatttcgcgggaattaactCTCGCGAAT
GGCGACCTTCAGCATTTTTCGCGGAACTTATTATTCGCGGTTTGgccgaa
aaatcgcgaaattgcTTCTCTTTTAAAGTATGACAATAATGACTGTCTAA
TGATGTGAAATGATGTGACCTTGAATCTAATTACGTAGCTGCAAACTTAG
AAGTTAATGAATGAATGACAGGCTCAGTAAGGAATCTGAAGGAGCTTCAT
AATCATTGACCTTCTCAGCAACTCCCTCCCTCATTAACAATGCCCCCCCT
AACAATCAACACATCaaattggtttgttttgtcCACTTTATTCTTTGAGG
ATTCGTcgaaataaaatacaaaagaagtgctatttaaaaaacaaataaat
gcTAATTCAAcacttttattgttttattttcaacttctAACTGGGGAATA
ATtggaaatataaaaataataccAAACCCATTATGAAGTTTTGATATGAA
TTTAGAATCATCAAACTGATTATTCATTCTATTACTTGCAATAGGGTCTT
GTCTagatacaaaaaaacaaacaaatgaatCATTTCTGACAATAACACAT
AAAGTACTGATCTACATAAATTACTGGATCATCAAGACTATCGTTGGGAT
AATCTTCTTCGTGCAACTTCTTCATTTTCGCCACAATTTCTTCGTATCCC
ACATTATGCATGGAGGCTGTATACCACCGAACCAAGTGATCTGTGTTTTC
AAATNN
Run BLAST on NCBI

transcript from alignment at scaffold_315:135070..135875

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059018 ID=TCONS_00059018|Name=TCONS_00059018|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at scaffold_315:135070..135875 (Clytia hemisphaerica)
NNATTTGAAAACACAGATCACTTGGTTCGGTGGTATACAGCCTCCATGCA
TAATGTGGGATACGAAGAAATTGTGGCGAAAATGAAGAAGTTGCACGAAG
AAGATTATCCCAACGATAGTCTTGATGATCCAGTAATTTATGTAGATCAG
TACTTTATGTGTTATTGTCAGAAATGattcatttgtttgtttttttgtat
ctAGACAAGACCCTATTGCAAGTAATAGAATGAATAATCAGTTTGATGAT
TCTAAATTCATATCAAAACTTCATAATGGGTTTggtattatttttatatt
tccaATTATTCCCCAGTTagaagttgaaaataaaacaataaaagtgTTGA
ATTAgcatttatttgttttttaaatagcacttcttttgtattttatttcg
ACGAATCCTCAAAGAATAAAGTGgacaaaacaaaccaatttGATGTGTTG
ATTGTTAGGGGGGGCATTGTTAATGAGGGAGGGAGTTGCTGAGAAGGTCA
ATGATTATGAAGCTCCTTCAGATTCCTTACTGAGCCTGTCATTCATTCAT
TAACTTCTAAGTTTGCAGCTACGTAATTAGATTCAAGGTCACATCATTTC
ACATCATTAGACAGTCATTATTGTCATACTTTAAAAGAGAAgcaatttcg
cgatttttcggcCAAACCGCGAATAATAAGTTCCGCGAAAAATGCTGAAG
GTCGCCATTCGCGAGagttaattcccgcgaaatatgCGGTTTCGAATCAT
TCCCGAAagttaattcccgcgaaatatgtaaattttttttcaccgaaatt
tacaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037169XLOC_037169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059018-exon-scaffold_315-1491911889:135070..135875TCONS_00059018-exon-scaffold_315-1491911889:135070..135875Clytia hemisphaericaexon
TCONS_00059018-exon-scaffold_315-1510915933:135070..135875TCONS_00059018-exon-scaffold_315-1510915933:135070..135875Clytia hemisphaericaexon
TCONS_00059018-exon-scaffold_315-1575043694:135070..135875TCONS_00059018-exon-scaffold_315-1575043694:135070..135875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:135070..135875 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.297134	0.347702	0.067286	0.0658288	0.721262	0.506623	1.37524	1.71665	5.50855	7.38149	0.842901	1.22691	0.0395228	0.0820897	0	0.0724259	0	0.0457252	0	0	0	0	0.204412	0.495575	0.574234	0.398604	0	0.173928	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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