TCONS_00059000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059000
Unique NameTCONS_00059000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059000 ID=TCONS_00059000|Name=TCONS_00059000|organism=Clytia hemisphaerica|type=transcript|length=717bp
TGTACGAGGAGCGAAACTGAATTTTATTAGATGATGGTTGAATTACTGAA
GATTGAAGAAGAACGACGGAAACGAGAACAAGTGCTGATGGCAGCAGAAA
TGAAATTGAGGTTGTTAGAAGAAGAACAAGCGAAACAGAGAGATAAACAA
CTGCTTGAACAACAAAGAatcgaagaagaaaaagaataccTCATCAAAAG
AGAGCATGAAAGGTTAATAAAGGAAAAGCAATACTCAGAAGAACAACAAA
GATTAGCTGAAGAAAAAACTCGTAAAGCAAAACAAGAAGCCGAACGTAAA
CGTCTCGCTCTTCTTGAACGTCAACGTGTGAACCTTGATAAAAGGAAAGA
ATTTGCGTTTACTAAATACAATCAAAAGACTTCAAAATCTAATGAGTTCT
CTTATTTTGTTCAAGTACCTCGAGAGGTTTGGGAACTACCTATTGGTTGG
CATGATAAACCTAAATACAAAGCTGGTGGAAGTCGAAAAAAGTGACTGTG
GAATTGATACTTTGGTGTGGATCCaggaaagttttgatttttgtcaaatg
tagggagaactttttttaattttcatgacAACAATGCTTTTTTAGAAGAA
TTAGAATTCTTTAATTTATAAATAGAAATTTGTAATTATTTAATTAATAA
TTTTAAGATGTATATTTTTTGTTAGCTCAAAATCGAAAGGAGAAAAAGGt
accgttttttttttgac
Run BLAST on NCBI

transcript from alignment at scaffold_315:201243..202642-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059000 ID=TCONS_00059000|Name=TCONS_00059000|organism=Clytia hemisphaerica|type=transcript|length=1400bp|location=Sequence derived from alignment at scaffold_315:201243..202642- (Clytia hemisphaerica)
TGTACGAGGAGCGAAACTGAATTTTATTAGATGATGGTACGTAGATTTCT
GAAAAAAGCAGGGATGAGCTGGAGTTTTTACAAGATACTTGACTAATTGG
TCATTTGAAGTGATAGAGATGACGCGTTCTTTAGAAAAAGTAACAAAATT
GTTTTATTACTGGTTAACGACCAACCAAATCAAATAAGAGCTTGTAAAAA
CTCCAGCTTGTCCCAAAAGCAGGCTGAAACATTGCTTATATAGGCTATCT
TGATGAGCAAAATTATATTTCAATACATGATTTTCTTTGTAGGTTGAATT
ACTGAAGATTGAAGAAGAACGACGGAAACGAGAACAAGTGCTGATGGCAG
CAGAAATGAAATTGAGGTTGTTAGAAGAAGAACAAGCGAAACAGAGAGAT
AAACAACTGCTTGAACAACAAAGAATCGAAGAAGAAAAAGAATACCTCAT
CAAAAGAGAGCATGAAAGGTAATCATAAAACCCAAAAAGTAAAAAATCAA
CATTGTTTGGGATCTCATTTGATATGCGTGCGATTTATGCTTTGTTTTCT
TTGAGATTGGGGAAACTTTTTAACTACTTTAGAAGCTTCCCGGAGGATAC
TAGGTTTACGAGATGACTGGTATGTCCGAGCCAAAGTTTGAAAATCGACC
TTTAGAGAGACTGAATTTCGAAAAGTTTGTCAATTTTTTGACAATTTTGC
CACCCTTAAAGAGACTATTTTTTATTTTCGTAATTTTAGAACCCTTACAG
ACTCAATTGCTTCTTAATGATTTTTGTACCCCTTTGAACTTTCGATTACT
CATCTTTATACCTAAATCTTTCAAAAAAGTGTTGACAAAAAGGATAGAAA
TGTATCAAGAATAATAAACAACCCACTACCTCCTTCTTTCTATAGGTTAA
TAAAGGAAAAGCAATACTCAGAAGAACAACAAAGATTAGCTGAAGAAAAA
ACTCGTAAAGCAAAACAAGAAGCCGAACGTAAACGTCTCGCTCTTCTTGA
ACGTCAACGTGTGAACCTTGATAAAAGGAAAGAATTTGCGTTTACTAAAT
ACAATCAAAAGACTTCAAAATCTAATGAGTTCTCTTATTTTGTTCAAGTA
CCTCGAGAGGTTTGGGAACTACCTATTGGTTGGCATGATAAACCTAAATA
CAAAGCTGGTGGAAGTCGAAAAAAGTGACTGTGGAATTGATACTTTGGTG
TGGATCCAGGAAAGTTTTGATTTTTGTCAAATGTAGGGAGAACTTTTTTT
AATTTTCATGACAACAATGCTTTTTTAGAAGAATTAGAATTCTTTAATTT
ATAAATAGAAATTTGTAATTATTTAATTAATAATTTTAAGATGTATATTT
TTTGTTAGCTCAAAATCGAAAGGAGAAAAAGGTACCGTTTTTTTTTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037156XLOC_037156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059000-exon-scaffold_315-1575043694:202607..202642TCONS_00059000-exon-scaffold_315-1575043694:202607..202642Clytia hemisphaericaexon
TCONS_00059000-exon-scaffold_315-1575043694:202175..202350TCONS_00059000-exon-scaffold_315-1575043694:202175..202350Clytia hemisphaericaexon
TCONS_00059000-exon-scaffold_315-1575043694:201243..201747TCONS_00059000-exon-scaffold_315-1575043694:201243..201747Clytia hemisphaericaexon
TCONS_00059000-exon-scaffold_315-1510915933:202607..202642TCONS_00059000-exon-scaffold_315-1510915933:202607..202642Clytia hemisphaericaexon
TCONS_00059000-exon-scaffold_315-1510915933:202175..202350TCONS_00059000-exon-scaffold_315-1510915933:202175..202350Clytia hemisphaericaexon
TCONS_00059000-exon-scaffold_315-1510915933:201243..201747TCONS_00059000-exon-scaffold_315-1510915933:201243..201747Clytia hemisphaericaexon
TCONS_00059000-exon-scaffold_315-1491911889:202607..202642TCONS_00059000-exon-scaffold_315-1491911889:202607..202642Clytia hemisphaericaexon
TCONS_00059000-exon-scaffold_315-1491911889:202175..202350TCONS_00059000-exon-scaffold_315-1491911889:202175..202350Clytia hemisphaericaexon
TCONS_00059000-exon-scaffold_315-1491911889:201243..201747TCONS_00059000-exon-scaffold_315-1491911889:201243..201747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:201243..202642 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.45789	4.47503	1.48712	1.73681	41.0628	19.7779	7.2433	2.92451	1.30902	0	0.0208922	1.48908	0.806414	0.630733	0.483691	0.136991	1.53688	1.78299	3.29783	4.25828	4.60535	4.01539	12.2707	9.61897	3.1739	7.27224	1.29577	0.546776	5.32705	4.0239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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