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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058983 ID=TCONS_00058983|Name=TCONS_00058983|organism=Clytia hemisphaerica|type=transcript|length=525bpRun BLAST on NCBI transcript from alignment at scaffold_315:4864..21297- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058983 ID=TCONS_00058983|Name=TCONS_00058983|organism=Clytia hemisphaerica|type=transcript|length=16434bp|location=Sequence derived from alignment at scaffold_315:4864..21297- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058983 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 5.622e-54 Identity = 84/174 (48.28%), Postives = 109/174 (62.64%), Query Frame = 3
Query: 3 RTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIDGVWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTELQDCNTFPCPIDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSR 524
R+R C P P +GG PC G E +NC PCP+DG W+ W+ W C+ CG G+Q+RTRTC NP+ +HGG PC G+ E+ CN PCP+ G W+ W W TCS CG G+Q+R R C NP P GG+ C G T+ Q CN CPIHG+W W++W+ C CG G + R+R
Sbjct: 4552 RSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTR 4725 HSP 2 Score: 180.644 bits (457), Expect = 1.401e-51 Identity = 84/174 (48.28%), Postives = 106/174 (60.92%), Query Frame = 3
Query: 3 RTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIDGVWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTELQDCNTFPCPIDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSR 524
RTRTC NP+ +HGG PC G+ E CN PCP+ G W+ W W TCS CG G+Q+R R C NP P GG+ C G T++Q CN CPI G W WA+W+ CS+ CG G++ RTR C++P P++GG C G +S CN+ PCP HG W WS W C + C G R R
Sbjct: 4609 RTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYR 4782 HSP 3 Score: 163.31 bits (412), Expect = 1.414e-45 Identity = 79/174 (45.40%), Postives = 102/174 (58.62%), Query Frame = 3
Query: 3 RTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIDGVWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTELQDCNTFPCPIDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSR 524
R R C NP P GG+ C G T+ Q CN CPI G W WA+W+ CS+ CG G++ RTR C++P P++GG C G + CN+ PCP G W+ W+ W TCS C G R RTC NP P +GG C G ++ Q CNT CP+ G WG W +W++C CG G + R R
Sbjct: 4666 RARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKR 4839 HSP 4 Score: 152.525 bits (384), Expect = 8.909e-42 Identity = 65/141 (46.10%), Postives = 87/141 (61.70%), Query Frame = 3
Query: 102 IDGVWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTELQDCNTFPCPIDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSR 524
+ G ++ W+ W CS+ CG G Q R+R C P P +GG PC G E+++C PCP+DG W+ W+ W C+ CG G+Q+RTRTC NP+ +HGG PC G+ E CN PCP+HG W W W C + CG G Q R+R
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRAR 4668 HSP 5 Score: 142.124 bits (357), Expect = 2.680e-38 Identity = 68/147 (46.26%), Postives = 88/147 (59.86%), Query Frame = 3
Query: 3 RTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIDGVWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTELQDCNTFPCPIDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCP 443
RTR C++P P++GG C G +S CN+ PCP G W+ W+ W TCS C G R RTC NP P +GG C G +++Q CNT CP+DG W +W +W+ CS CG G ++R R C +P P GG PC GD T+ CN CP
Sbjct: 4723 RTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00058983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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