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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058958 ID=TCONS_00058958|Name=TCONS_00058958|organism=Clytia hemisphaerica|type=transcript|length=593bp
CTCGTTTTTATAGGGACACCAACCCCCCAAAGAATTGGGAACAATTTGAC
CAAGTCTCGCATGGAAAGGAAGATGGAGGTCATTGAAAGATGTTGATGCT
GTGATCTGATCATCCGATAACTTCTTGTTACCGATACCTTGAGGCCAAGA
ACAATCTaatgaaaagagaaaatattttttgAATGAAGAACTGACAGAGA
AGTTGGCGATCAAAGATGAATACATTTCCACCTTAAAATTGCAAATTGAA
AATCTTGAGAAAGTTCATCAACAGGATGAATGGGAATTATCACAAGCCGA
CGACAATTTGGAGATGGTTGAACGAAAAGCCACAGACATGGAAAGAAAAG
CTACTGTATTGATGACAAAAATGAAGACAGAACTGATCAAGGAACGGCAA
TTAAACCAACAATTACATCAACATATCGCTACGATGGATGCAAACCTCAC
TCAAATCGCCCAATATAATAACGTCCTTCAAAAGAACAAGGAGCTTGACC
AGGCTAACCGAGAAAAACTAGCCCGAATGACAAAACGATCAGTTTCTCGT
AAATCTTCGATCGATCTTTCGAATGATGTTGTTATGAAGTCTT Run BLAST on NCBI transcript from alignment at scaffold_315:193533..197620+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058958 ID=TCONS_00058958|Name=TCONS_00058958|organism=Clytia hemisphaerica|type=transcript|length=4088bp|location=Sequence derived from alignment at scaffold_315:193533..197620+ (Clytia hemisphaerica)
CTCGTTTTTATAGGGACACCAACCCCCCAAAGAATTGGGAACAATTTGAC
CAAGTCTCGCATGGAAAGGAAGATGGAGGTCATTGAAAGATGTTGATGCT
GTGATCTGATCATCCGATAACTTCTTGTTACCGATACCTTGAGGCCAAGA
ACAATCTaatgaaaagagaaaatattttttggtgaGTACTATAGCTACAC
TCCTTTTTTACATAAGCATACTTAGGCTGAAATtcggtaaaaaataagca
taatgctaagcataatgctgagcatacctccaagctgaaatacaaaaaaa
ttcgtGCTCTTTTTATAAAATgctgacctttttagggttactttttaaag
ctgtttgagcTTTATAAGACCAAATATTTTTGCATGCTGCTCCAAATTGC
AAGGATAACTTTCATTCTTTGATCCGAATCAATGTGCCGACTTAAAgttc
gaaattttcatgaacccaaagaacccaaagaacaaatcgaagtctaagca
tataaataagcataaattaaggctgaaaatgagattttgctaagcatatc
GAGCCTCTGGATTTTCCcgcatgcttataaaaaaaagagtgtatttctTC
TTATTTATAAAATAAATAGCCAATAGCTAACAGCTTACCCAACGGTTGTC
TTGGTTCAGGTTTATCTTCAGTATTTTCTGCAATCTCATCTTTCTTGTGA
TTGGCCACCGGTACAAGGTCACGTGACAATTTGTGATCTTCTTGATGTTT
ATCAAACCATTTATGAACAGGGAAATCATAATAATCTCCATTCTCTTTCG
TCACCGTCACCtgagacaaaaaagaaaaaattcttgatattcatggctaa
atcttttatacggaaacacacgAAAAATATCGGGTGTTTGTCACAAGTTT
CATTGTTTACCATacttacctataacaatccaaTTGTTCCCTTAACAATC
CAAAAgcgccaaaatcgcaaaaattcggATATTGCTGCGGTAAAGCCact
tttttgcgattttggcgcTTTTGAAATATTAAGGAAACTATTGGATTGTT
ATAGGTACGGTATATACAAAACTGCTGGCAAACGCCCGTTGTTTTTGGGG
TGTTTCTGTATAAAAGAGTACGTCATGAATATTAAGAATTCGGAAagtta
aaactttttcaaactaaATTAATATCATCAGCGAACCACTGAATTAAGAA
GTCATGTTTGACAATTTTCCTGAGGCAATGAAGCAACGAATGAATGACCG
CTTTAGTGAATGATGGCCGACATTTTGTGGTTTAAAGGTGGATCCATTTT
TGAAATTGTGACGTCGACGTGATAAAATTAATTGACGCCATTCAATCgat
aaaatatttgacgtcactttttaaaCCATCTTTTATCTCTGAATGCCGAG
GTGTTCAGAGGCTCGTTAGAAAAAAATAGTGAAATTTCGCTAGAATTGTG
TGTATTAGAGCatatttttgtattaaaaatgGATTTTGGAGCGATGGAAA
TGAGTTGGGAGGAAGGAGATGTCATTTCCAAAATCTTGAACGAAAATAAA
GACGAAATGTCgttcaaaaatgaagaaaaaacacCTATGAAATCTTTGTA
TgaagaatttttggaaatcggtGAAAAATACGAATTTCCTCCAAGAACAG
TTGAAGTTGGAGAATTTAATTGTGTTGAACGTTCAAAAGAAACAGAGGTG
GCTGATGAACAAATGATGAAAACGAACGCTGGACCTTTGAATCGTACttt
gaagaaaacaaagaaaatgttcaatcCTTCTCAATTCGAAACCAGTCTAC
CTTCGAAGCTTTCAACAAGAACTTCAACAACAAACTCAGCACCTTTTGTT
GCTAAAGCTGAAAGAATTCCTTCAGAAGAAAGTAatttatcaacaaaaac
aaacaaacatgtAACTAAAACAGTTGTTCGACCTCCGCCAGGCTTTCCTG
CGAAACCAAAAGGTGAGAAACCGACTTCAAACACCGTCCAAAGATTATTG
AATCAGTCACCTCCACAGGAATTAAAACCAACAGCAAACCATTTCAAAGA
CATTCCAAATATCCAATCAAGCATCTCCAAAACAAAGCCATCCAAGTTGT
CAGGAATGATGAAAGATTTTGAATGTTTGAGTGTGGTGATGGATCAAGAG
ATTCATAAATATGAAAATCAACTTTTGACCAATAGAACCAAAGATGAAGG
TCGCATTGATATGATGAAAACATTGTATTATGAACAACAAGAAAAAGTGG
AAAAGTCTAATCTCAATCATCAacagaaaatcaaaatgttgGAAAAACAA
CACCAGGCGAAAATGCGTGAAATGGAACTCCAGCATGAACaagaaattct
gaaattgaagaagaattTAAAGAAGGAGAAAACAGGAGTCGAAGAACTTC
AAATAGAATTTTATAAATTGTTGGATGAAAGACAGCATAAAGTAGACGCT
TTGAATGTTAAGATCGATGATTTACAATCTGAATCGTTGGATCAAGAAAC
TCCGCCTCCATCAGCTTCTGGTGATGATGATGTTAAGAAATTACAAAACG
AATTCAACAATGAATTGTTTAAACGTGAAGAAGAAATTGATCGATTGAAT
GCTACCATCTTTGATTTGAGATACAAACTGGAAGCTTATGAAGAAGGAGG
ACATGACCATATTGCTTGGGAGGTAAACAATGAGAATCAGTTAATCAACT
TAAGCTCATTCACTATATTTCACTAATTTTAGCGATCTCTCTATAAATCT
ATCTGAGATTTTTGTATAACGTTGGTAACCAAGTACTATTTTTGAAAACG
ATATTTTGTTATAGTCAGTCTTTGCCANTGGTCTAGGAGTCGTCTTGTTA
GAACCGTCTTACGCTGTAGTTTATACTGCATGCTAGCTTGCGAGACACCG
ACACTCAGTTTTTTTAGATCAAGTGCAAAAATCCAGCGTGAACCAATAGG
AAGAAAGGCCAATGCATTCTCGCTTCATCAACGATGGATGTATTGTAGGG
ATGTAGTGGAGGCTAACGATCTGAAGGAATGCGCCTCGCATTGAATGGAC
TGGAAACGACAAGCGAGTATTCAGTTTGAAACCCCGCAGGGGCTATGAGA
TAACACTCTTTGAtggaaaatgaagccacttatttcccatttgAAACGAC
GCGTGACCAATGTGGTTTTAACACAAACGCCGATTTGAAATTAGATTCTA
TCACCAGAAAACTATGTCTAGATTCAAACGTCATTCCAAAAGCGGAAAAA
CAAGATTCTTATTATCGAATTTTCCGAGTGTTGGCTATTTTCCACgaatg
tttaatttttaagatacTTTCTTCAGATATTTAATGTGCAGGTATAACAA
TTATGGCGATCGGTTTAACCAGATAGGGATAGAAACCAAAGCAAAACTAC
GAAAGATAAAATTCGACATTCCGatattttaaaagcaaaaaaagtttacT
AAGAAATGCAGTTCTTCCCTTTCCATTTTAACAGAATGAAGAACTGACAG
AGAAGTTGGCGATCAAAGATGAATACATTTCCACCTTAAAATTGCAAATT
GAAAATCTTGAGAAAGTTCATCAACAGGATGAATGGGAATTATCACAAGC
CGACGACAATTTGGAGATGGTTGAACGAAAAGCCACAGACATGGAAAGAA
AAGCTACTGGTAAGTTTCTGAGATCTTTTGGACTGATTTAAACTCGAAGT
ATCACCGTCTAAAATTATCGAATTATGGGTGATCTTCTTGTGCAATTCAT
ATTCTTTCACACAAAAAGACAGTTTCGGAATATGTACTCTTCACTCTAAA
AACTTGAAGTATGATAGTTTTGATCTTTGAATTTTCTATCCTTTCTCATA
GTATTGATGACAAAAATGAAGACAGAACTGATCAAGGAACGGCAATTAAA
CCAACAATTACATCAACATATCGCTACGATGGATGCAAACCTCACTCAAA
TCGCCCAATATAATAACGTCCTTCAAAAGAACAAGGAGCTTGACCAGGCT
AACCGAGAAAAACTAGCCCGAATGACAAAACGATCAGTTTCTCGTAAATC
TTCGATCGATCTTTCGAATGATGTTGTTATGAAGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058958-exon-scaffold_315-1491911889:193533..193713 | TCONS_00058958-exon-scaffold_315-1491911889:193533..193713 | Clytia hemisphaerica | exon |
| TCONS_00058958-exon-scaffold_315-1510915933:193533..193713 | TCONS_00058958-exon-scaffold_315-1510915933:193533..193713 | Clytia hemisphaerica | exon |
| TCONS_00058958-exon-scaffold_315-1575043694:193533..193713 | TCONS_00058958-exon-scaffold_315-1575043694:193533..193713 | Clytia hemisphaerica | exon |
| TCONS_00058958-exon-scaffold_315-1491911889:197017..197191 | TCONS_00058958-exon-scaffold_315-1491911889:197017..197191 | Clytia hemisphaerica | exon |
| TCONS_00058958-exon-scaffold_315-1510915933:197017..197191 | TCONS_00058958-exon-scaffold_315-1510915933:197017..197191 | Clytia hemisphaerica | exon |
| TCONS_00058958-exon-scaffold_315-1575043694:197017..197191 | TCONS_00058958-exon-scaffold_315-1575043694:197017..197191 | Clytia hemisphaerica | exon |
| TCONS_00058958-exon-scaffold_315-1491911889:197384..197620 | TCONS_00058958-exon-scaffold_315-1491911889:197384..197620 | Clytia hemisphaerica | exon |
| TCONS_00058958-exon-scaffold_315-1510915933:197384..197620 | TCONS_00058958-exon-scaffold_315-1510915933:197384..197620 | Clytia hemisphaerica | exon |
| TCONS_00058958-exon-scaffold_315-1575043694:197384..197620 | TCONS_00058958-exon-scaffold_315-1575043694:197384..197620 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:193533..197620 + |
Blast
The following BLAST results are available for this feature:
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