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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058950 ID=TCONS_00058950|Name=TCONS_00058950|organism=Clytia hemisphaerica|type=transcript|length=2466bpRun BLAST on NCBI protein sequence of TCONS_00058950-protein >TCONS_00058950-protein ID=TCONS_00058950-protein|Name=TCONS_00058950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp MSLRIVTSSWNIAGLSPKDENLDEWLHLLEDHHDKLSDVFVVGLQEVPSDRun BLAST on NCBI transcript from alignment at scaffold_315:101047..109998+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058950 ID=TCONS_00058950|Name=TCONS_00058950|organism=Clytia hemisphaerica|type=transcript|length=8952bp|location=Sequence derived from alignment at scaffold_315:101047..109998+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_315:101047..109998+ >TCONS_00058950 ID=TCONS_00058950|Name=TCONS_00058950|organism=Clytia hemisphaerica|type=CDS|length=17160bp|location=Sequence derived from alignment at scaffold_315:101047..109998+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058950 vs. Swiss-Prot (Human)
Match: INP5K (Inositol polyphosphate 5-phosphatase K OS=Homo sapiens GN=INPP5K PE=1 SV=3) HSP 1 Score: 192.971 bits (489), Expect = 2.373e-53 Identity = 144/428 (33.64%), Postives = 209/428 (48.83%), Query Frame = 2
Query: 296 MSLRIVTSSWNIAGLSPKXXXXXXXXXXXXXXXXXXXXVFVVGLQEVPSDPSSLVLDYYIRNDPWTKRLLLFLGTKGIAMVEMVRMMGLLLIVAVKPKHLSHIREIRTTYTKTAFYGLLGTKGAVSIRFNLYGESFCFVNNHFVAGEDYCLQRNNHFQSVMSKTMFPNCESSEIQK---HRYNILFGDFNYRIENLEKSNVQELATKSDFKTLISNDQLTINRQKGECFEGYNEFDISFPPTYKYDLNSDAFDTSAKKRTPSYTDRILW--KEQTDTGETT---------LQQXXXXXXXXXXXXDHRPISGEFIVNIPVVLTSTPVIEFRFDDSFIPWTSEEDGVCIFHCKG-YQTSSWDWIGLYSLDFKSPKDYYTYEW----SVSGADETGQDGCMVLFDDVPEEHGYYMFGYWSRALECVLGFS 1522
+S+ +VT WN+A +P + D + + ++V+GLQE+ S SL+ D ND W+ L+ L V VRM G+LL+V K +HL +I+ + T T T +G G KG V+I LYG +N H QR HF ++ NCE +I H I FGD N+RIE+ V+E + L DQL+I ++ + E + FPPTYK+D NS+ +DTS KKR P++TDRILW K Q G T L YS+HM+Y SDH+P+SG F + + L S P+I +D WT E D + + + +S WDWIGLY + + DY +Y W VS +D Q + ++P ++ Y+S +L V+G S
Sbjct: 14 LSIHVVT--WNVASAAPPLDLSDLLQLNNRNLNLD---IYVIGLQELNSGIISLLSDAAF-NDSWSSFLMDVLSPLSFIKVSHVRMQGILLLVFAKYQHLPYIQILSTKSTPTGLFGYWGNKGGVNICLKLYGYYVSIINCHLPPHISNNYQRLEHFDRILEMQ---NCEGRDIPNILDHDLIIWFGDMNFRIEDFGLHFVRESIKNRCYGGLWEKDQLSIAKKHDPLLREFQEGRLLFPPTYKFDRNSNDYDTSEKKRKPAWTDRILWRLKRQPCAGPDTPIPPASHFSLSLRGYSSHMTYGISDHKPVSGTFDLELK-PLVSAPLIVLMPEDL---WTVENDMMVSYSSTSDFPSSPWDWIGLYKVGLRDVNDYVSYAWVGDSKVSCSDNLNQ--VYIDISNIPTTEDEFLLCYYSNSLRSVVGIS 426 The following BLAST results are available for this feature:
BLAST of TCONS_00058950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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