TCONS_00058947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058947
Unique NameTCONS_00058947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058947 ID=TCONS_00058947|Name=TCONS_00058947|organism=Clytia hemisphaerica|type=transcript|length=672bp
GCAGTGGAGGGCTTTGGATGATCGGTTCCTTGGGCTGACTGGGTGAGTGA
CTGTTACAAGTTTTACAGCAATCACGGATTCGGTGGATATCTTTGTTGAT
TCCCGGCCAATAGATACAATAATTGACTCGAGCCTGCATACCTGTGCATC
CTTGATGGGCGGAATGAAGCGCTTGAAGGATCTGATGACGGAGGTTCTTG
GGTATCACGAGGCGTTTGTCTAACATTATGAGACCATTCCAATGCGATAG
ACGATTTCTAACTTCCCAGAATGGTCGTAGATTGGCAGGTAGGCTTTCAC
GGGCTGTTGGGAAGCCGTCCTGGATGGTTTGTAGCAGTGATGAGTAGTCA
GTATCAGTTGATCCATGTTGACGTATCTGATCAAGAGTAAGGAGTTGAAC
ATGGTCAGTTGTTTGGCACATATTGATGGCGGAAATGGCATTGACCCCTG
AATCGATGTCTGGATTTCGATCATCTTTTGTCATGGTAGCAGTAGTTGTC
GTTTGACGCAATACTCTCATGGTCTCCTTGTATGAGTCGATGGAAGCTAC
GCTGACAGGGTTCCTGGACATGGCATCGGGTCCACGCATCCATTTTCCAG
GGCAATACTGGATGGTGAATCGGAATCTGAGGGAATGGCTCTTTAGCTTT
TGAATGCGAGGATTCTTTACTG
Run BLAST on NCBI

protein sequence of TCONS_00058947-protein

>TCONS_00058947-protein ID=TCONS_00058947-protein|Name=TCONS_00058947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
VKNPRIQKLKSHSLRFRFTIQYCPGKWMRGPDAMSRNPVSVASIDSYKET
MRVLRQTTTTATMTKDDRNPDIDSGVNAISAINMCQTTDHVQLLTLDQIR
QHGSTDTDYSSLLQTIQDGFPTARESLPANLRPFWEVRNRLSHWNGLIML
DKRLVIPKNLRHQILQALHSAHQGCTGMQARVNYCIYWPGINKDIHRIRD
CCKTCNSHSPSQPKEPIIQSPPL
Run BLAST on NCBI

transcript from alignment at scaffold_314:747159..747830

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058947 ID=TCONS_00058947|Name=TCONS_00058947|organism=Clytia hemisphaerica|type=transcript|length=672bp|location=Sequence derived from alignment at scaffold_314:747159..747830 (Clytia hemisphaerica)
CAGTAAAGAATCCTCGCATTCAAAAGCTAAAGAGCCATTCCCTCAGATTC
CGATTCACCATCCAGTATTGCCCTGGAAAATGGATGCGTGGACCCGATGC
CATGTCCAGGAACCCTGTCAGCGTAGCTTCCATCGACTCATACAAGGAGA
CCATGAGAGTATTGCGTCAAACGACAACTACTGCTACCATGACAAAAGAT
GATCGAAATCCAGACATCGATTCAGGGGTCAATGCCATTTCCGCCATCAA
TATGTGCCAAACAACTGACCATGTTCAACTCCTTACTCTTGATCAGATAC
GTCAACATGGATCAACTGATACTGACTACTCATCACTGCTACAAACCATC
CAGGACGGCTTCCCAACAGCCCGTGAAAGCCTACCTGCCAATCTACGACC
ATTCTGGGAAGTTAGAAATCGTCTATCGCATTGGAATGGTCTCATAATGT
TAGACAAACGCCTCGTGATACCCAAGAACCTCCGTCATCAGATCCTTCAA
GCGCTTCATTCCGCCCATCAAGGATGCACAGGTATGCAGGCTCGAGTCAA
TTATTGTATCTATTGGCCGGGAATCAACAAAGATATCCACCGAATCCGTG
ATTGCTGTAAAACTTGTAACAGTCACTCACCCAGTCAGCCCAAGGAACCG
ATCATCCAAAGCCCTCCACTGC

Coding sequence (CDS) from alignment at scaffold_314:747159..747830

>TCONS_00058947 ID=TCONS_00058947|Name=TCONS_00058947|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_314:747159..747830 (Clytia hemisphaerica)
GTAAAGAATCCTCGCATTCAAAAGCTAAAGAGCCATTCCCTCAGATTCCG
ATTCACCATCCAGTATTGCCCTGGAAAATGGATGCGTGGACCCGATGCCA
TGTCCAGGAACCCTGTCAGCGTAGCTTCCATCGACTCATACAAGGAGACC
ATGAGAGTATTGCGTCAAACGACAACTACTGCTACCATGACAAAAGATGA
TCGAAATCCAGACATCGATTCAGGGGTCAATGCCATTTCCGCCATCAATA
TGTGCCAAACAACTGACCATGTTCAACTCCTTACTCTTGATCAGATACGT
CAACATGGATCAACTGATACTGACTACTCATCACTGCTACAAACCATCCA
GGACGGCTTCCCAACAGCCCGTGAAAGCCTACCTGCCAATCTACGACCAT
TCTGGGAAGTTAGAAATCGTCTATCGCATTGGAATGGTCTCATAATGTTA
GACAAACGCCTCGTGATACCCAAGAACCTCCGTCATCAGATCCTTCAAGC
GCTTCATTCCGCCCATCAAGGATGCACAGGTATGCAGGCTCGAGTCAATT
ATTGTATCTATTGGCCGGGAATCAACAAAGATATCCACCGAATCCGTGAT
TGCTGTAAAACTTGTAACAGTCACTCACCCAGTCAGCCCAAGGAACCGAT
CATCCAAAGCCCTCCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037133XLOC_037133Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058947-proteinTCONS_00058947-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058947-exon-scaffold_314-1491911889:747159..747830TCONS_00058947-exon-scaffold_314-1491911889:747159..747830Clytia hemisphaericaexon
TCONS_00058947-exon-scaffold_314-1510915933:747159..747830TCONS_00058947-exon-scaffold_314-1510915933:747159..747830Clytia hemisphaericaexon
TCONS_00058947-exon-scaffold_314-1575043694:747159..747830TCONS_00058947-exon-scaffold_314-1575043694:747159..747830Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:747159..747830 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.672672	0.947409	2.02682	2.16063	3.0117	2.80198	3.06124	2.87632	1.56427	2.1944	2.33896	1.2283	0.380623	0.665563	0.599447	0.363751	0.385381	0.457232	0.353615	0.0969705	0.375087	0.863022	0.0878576	0.352836	0.540352	0.760532	0.344932	0.382495	0.404171	0.317726
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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