TCONS_00058932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058932
Unique NameTCONS_00058932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058932 ID=TCONS_00058932|Name=TCONS_00058932|organism=Clytia hemisphaerica|type=transcript|length=395bp
GCACAACATTAGAACATCTTCTCACTGACTGCGAAGGTTTACGTAAATTA
CGCCGTAAAATCAACGTTTCAAATTTTCGTTTCAATCTCTGTCGAACCAT
TGGTTGagtgaaaatataaaacaacGCATTTAGGTTCGAATCTAACCGGA
AAAGCAAGATAGTCCAACTACCGTAAATCGTTTTCCCAAGGTTGATAAAC
AAATCCGGTAACACTTCAAATAATAGAAAAGCACCCATAATGATTGCTGG
TATCGTCAGTCGACGCCAAAGCTTTGTCCGCATCGTGTTCCTCGAAGTAG
AAGTAAGAGATTTACGCAGGATATAGGCGTAAACAAAACCGAAAGAAAAA
ACAGTAATGATATGAAAAGCGGTGGAGATATAGAGGCGAGGTATT
Run BLAST on NCBI

protein sequence of TCONS_00058932-protein

>TCONS_00058932-protein ID=TCONS_00058932-protein|Name=TCONS_00058932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
IPRLYISTAFHIITVFSFGFVYAYILRKSLTSTSRNTMRTKLWRRLTIPA
IIMGAFLLFEVLPDLFINLGKTIYGSWTILLFRLDSNLNALFYIFTQPMV
RQRLKRKFETLILRRNLRKPSQSVRRCSNVV
Run BLAST on NCBI

transcript from alignment at scaffold_314:504907..505301

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058932 ID=TCONS_00058932|Name=TCONS_00058932|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at scaffold_314:504907..505301 (Clytia hemisphaerica)
AATACCTCGCCTCTATATCTCCACCGCTTTTCATATCATTACTGTTTTTT
CTTTCGGTTTTGTTTACGCCTATATCCTGCGTAAATCTCTTACTTCTACT
TCGAGGAACACGATGCGGACAAAGCTTTGGCGTCGACTGACGATACCAGC
AATCATTATGGGTGCTTTTCTATTATTTGAAGTGTTACCGGATTTGTTTA
TCAACCTTGGGAAAACGATTTACGGTAGTTGGACTATCTTGCTTTTCCGG
TTAGATTCGAACCTAAATGCgttgttttatattttcactCAACCAATGGT
TCGACAGAGATTGAAACGAAAATTTGAAACGTTGATTTTACGGCGTAATT
TACGTAAACCTTCGCAGTCAGTGAGAAGATGTTCTAATGTTGTGC

Coding sequence (CDS) from alignment at scaffold_314:504907..505301

>TCONS_00058932 ID=TCONS_00058932|Name=TCONS_00058932|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_314:504907..505301 (Clytia hemisphaerica)
ATACCTCGCCTCTATATCTCCACCGCTTTTCATATCATTACTGTTTTTTC
TTTCGGTTTTGTTTACGCCTATATCCTGCGTAAATCTCTTACTTCTACTT
CGAGGAACACGATGCGGACAAAGCTTTGGCGTCGACTGACGATACCAGCA
ATCATTATGGGTGCTTTTCTATTATTTGAAGTGTTACCGGATTTGTTTAT
CAACCTTGGGAAAACGATTTACGGTAGTTGGACTATCTTGCTTTTCCGGT
TAGATTCGAACCTAAATGCgttgttttatattttcactCAACCAATGGTT
CGACAGAGATTGAAACGAAAATTTGAAACGTTGATTTTACGGCGTAATTT
ACGTAAACCTTCGCAGTCAGTGAGAAGATGTTCTAATGTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037118XLOC_037118Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058932-proteinTCONS_00058932-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058932-exon-scaffold_314-1491911889:504907..505301TCONS_00058932-exon-scaffold_314-1491911889:504907..505301Clytia hemisphaericaexon
TCONS_00058932-exon-scaffold_314-1510915933:504907..505301TCONS_00058932-exon-scaffold_314-1510915933:504907..505301Clytia hemisphaericaexon
TCONS_00058932-exon-scaffold_314-1575043694:504907..505301TCONS_00058932-exon-scaffold_314-1575043694:504907..505301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:504907..505301 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190741	0	0	0.845157	0.514449	0	0	1.37747	0.160733	0.398189	0	0.254064	1.01484	1.18567	0.86647	0.348696	0	0.88058	1.21657	1.48523	0.184419	0.269859	0.437399	0.596488	0.409579	1.09662	0.523086	0.558252	0.211707	0.431392
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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