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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058881 ID=TCONS_00058881|Name=TCONS_00058881|organism=Clytia hemisphaerica|type=transcript|length=1447bp
AGCGCTGTTAGAAACCATGAATTTCTTTAATCTTCAACCATTTCTTCCAT
ACATAAATATTAAAGATCTTCACAATGTGGACAGGGAAAAACCAGCAACT
GGATGATGACGAGTCAGACATGAACCTCAACTCTCTTTCTCTTTCAACGC
AATTTGAAGACGAGTACGATGGAAAGAAATATTCGTTCGATTTCAACGCG
TTGAAGAAAGTGCAACGACGCGAACGAGCCAAGATCTTTCTTTTCATGTT
GGTGATTTTTGTTCTGGCTTCAGCATTAGTTGTCATGACGATCTTGTATC
GAAACAAAATGGATGATAATAAAGATTTGAGTATAACTTTAACTGCCACT
AAAGTAAAACTGACAGCAGCCAGAAACAAAACAGCCAATATCGGTGAGAA
ATGTCATTCTACTGGCAACATTACAAAATGTGGAAAAAATGCATATTGTA
GGAAGTCGAATATTGGCAAATATTTCTGTGATTGTTTGACAGGATATATG
AGTGATGGATCAGCTGATTGCCAAGATGTTCATTTTTCGATCGACTTCAA
GGAACCAACTACCAATCATCTACCAGAATTACGACGACTTCATTTCTTAC
AAAGTGACGCTTTATCGATATGTTTCTGGTTCAAATTAAACAATGCTTCT
CATTCGAGGTGGATGTCAGCTTTCCTATACACCTCTGTTGAAATTGAGGG
TGATAATGATCTCTCTATTTGGGTCACCAAAGACCAGGCTCATGTTTATT
TGAAAAGCTCTGGCAAGAGAATTGCCCAAACAACTTTCCAAGAGAATGAA
TGGTCTCATTTATGTTGGATATGGGAAAATTCAGGTCGTTGGTTGACCTA
TGTGAATGGAGATTTAAAGAAAGCTGGTTTCGAAGCCAATGATAAATTTC
AATCCTCTTTTCCGGATAGTTTAGGAAACCTTGTACTTGGCCAAGACAAA
GATGAAGATACGATCAACCAAGACGCTCAAATGTTGCATGGTTCTATATC
ACAATTCATGATTTATAACAGTATGCTAACCAGAGATGACGTGGTGGCAG
TTTATCAGAATCGGGCGCCCATTGACAACATTGTGGTTGGTTGGTGGCAG
TTTAAAAATCTTACCAATAGCCCAACCAATGAGATTGCTGAAGGTCCGTT
TCCAAAGGAGATCTTGGATAGAGAAGTGGTTTAAGTCTTTGGAATGACAA
GTAATTACACTGGAAGGATAAAATGtgtgttttgaaaaatgagCTGAGGA
CGTTCTTAGCTCGGAGAGTACACCTTGAGCCTTGGAAAGGTATCATACGG
TGTAAGAGCCAAGACTTAAAGAATgctgaaaaataaactttaaatAAACA
ATACGAAAAAAACGGATCGAGTGTCATTCTAGAGTGCTCCTGACTAAATG
ATGGTGTAAAAGTAATCACCTaatcttaggttccaaataaacggggg Run BLAST on NCBI transcript from alignment at scaffold_314:317532..322376- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058881 ID=TCONS_00058881|Name=TCONS_00058881|organism=Clytia hemisphaerica|type=transcript|length=4845bp|location=Sequence derived from alignment at scaffold_314:317532..322376- (Clytia hemisphaerica)
AGCGCTGTTAGAAACCATGAATTTCTTTAATCTTCAACCATTTCTTCCAT
ACATAAATATTAAAGATCTTCACAATGTGGACAGGGAAAAACCAGCAACT
GGATGATGACGAGTCAGACATGAACCTCAACTCTCTTTCTCTTTCAACGC
AATTTGAAGACGAGTACGATGGAAAGAAATATTCGTTCGATTTCAACGCG
TTGAAGAAAGTGCAACGACGCGAACGAGCCAAGATCTTTCTTTTCATGTT
GGTGATTTTTGTTCTGGCTTCAGCATTAGTTGTCATGACGATCTTGTATC
GAAACAAAATGGATGATAATAAAGATTTGAGTATAACTTTAACTGCCACT
AAAGGTGAGGAGGTTGTCCAGTTGACTTATCAGTACTTACAAAGAGCTAG
CTAGTTTATCCGTTCAAGAAAGCACTTTACAAAAGGAAAGGGGTCACGAC
GACACGACAATGCCATGACTCAATAACTTCAAATTTTCAAACATTTTTTT
ATATAAAATGCGCGTACACACCCTAATATGAAGTGTGATAGAAAAACAGT
GGCGGGATAGGCCGTTGTATGCTCTAGACCCATCGGTACAGCACCGTACC
ATACACGATTTGATCAAGTAATCCATGTTTTTTTTAAATAAACCATATAC
TCCACTGTTAGTTTCATTCTTCTTCTTTCAGTAAAACTGACAGCAGCCAG
AAACAAAACAGCCAATATCGGTGAGAAATGTCATTCTACTGGCAACATTA
CAAAATGTGGAAAAAATGCATATTGTAGGAAGTCGAATATTGGCAAATAT
TTCTGTGATTGTTTGACAGGATATATGAGTGATGGATCAGCTGATTGCCA
AGGTAATGTCACTTCCCAATTGCTACATCAAGGTCAAACTGTACTGTATA
AGGAGGCAGAATGCTCTGAGCATAACACAAAAAAACAAGTTAATATTTTG
ATATTATCTTTTCATTCCATCTTGTGCGGTTTGCATCAATGCCAGTATTT
GATAAATCTTGAGCAATAGCTACAATATCATTTTTATAATGCAAAATCCT
AAACAATGAATTAATACTTTTGGTTTTCATCTTTCATCTATCGAGCTCTT
TTTGCTTGCCATTTGCGAATCGTGTGTGTGACCTATATATATTTTGCTTG
TAACTTGTGAATTGAGTGACCTACACGTTTTCTTATAAGAACCGGCAGGT
ACAAAATGCATAAAACATAATGCATATTGCATAATGCATAATAGTACTGT
GTAATTTACAGAGCGATTTTATATTTTCTAAAACTCTCCTTTGTAGAGGC
TAAAACCATGTAAAACCCTCTTTAGAAGAGTTTCTTAAGTTCAGAGGGAT
TTCCCCAGACATGATATTTACTTTTCGAATCCGAACGAAAGAGAAAACAT
TCGAATCATAACAACAGAAAGGGTTTTCCCTCAGCANAGTACTTACAAAG
AGCTAGCTAGTTTATCCGTTCAAGAAAGCACTTTACAAAAGGAAAGGGGT
CACGACGACATGACAATGCCATGACTCAATAACTTCAAATTTTCAAACAT
TTTTTTATATAAAATGCGCGTACACACCCTAATATGAAGTGTGATAGAAA
AACAGTGGCGGGATAGGCCGTTGTATGCTCTAGACCCATCGGTACAGCAC
CGTACCATACACGATTTGATCAAGTAATCCATGTTTTTTTTAAATAAACC
ATATACTCCACTGTTAGTTTCATTCTTCTTCTTTCAGTAAAACTGACAGC
AGCCAGAAACAAAACAGCCAATATCGGTGAGAAATGTCATTCTACTGGCA
ACATTACAAAATGTGGAAAAAATGCATATTGTAGGAAGTCGAATATTGGC
AAATATTTCTGTGATTGTTTGACAGGATATATGAGTGATGGATCAGCTGA
TTGCCAAGGTAATGTCACTTCCCAATTGCTACATCAAGGTCAAACTGTAC
TGTATAAGGAGGCAGAATGCTCTGAGCATAACACAAAAAAACAAGTTAAT
ATTTTGATATTATCTTTTCATTCCATCTTGTGCGGTTTGCATCAATGCCA
GTATTTGATAAATCTTGAGCAATAGCTACAATATCATTTTTATAATGCAA
AATCCTAAACAATGAATTAATACTTTTGGTTTTCATCTTTCATCTATCGA
GCTCTTTTTGCTTGCCATTTGCGAATCGTGTGTGTGACCTATATATATTT
TGCTTGTAACTTGTGAATTGAGTGACCTACACGTTTTCTTATAAGAACCG
GCAGGTACAAAATGCATAAAACATAATGCATATTGCATAATGCATAATAG
TACTGTGTAATTTACAGAGCGATTTTATATTTTCTAAAACTCTCCTTTGT
AGAGGCTAAAACCATGTAAAACCCTCTTTAGAAGAGTTTCTTAAGTTCAG
AGGGATTTCCCCAGACATGATATTTACTTTTCGAATCCGAACGAAAGAGA
AAACATTCGAATCATAACAACAGAAAGGGTTTTCCCTCAGCATATTATAA
GTAATAAGAAAATGCAAACAGATCAGAAAGATTTCCCCCATCTTTCTTTC
TCAAAAAGGTATAAATACACAAACATTCGAATGTAAAAAGATTGGAAGTC
TATTTTCTTTGATCTAGTTTTCGCATGAAGCTGAGCTCTTTAACTTATAC
ATATTTTGTATATTGGCTGGATATTGGCTTATCTAACAAAAAGCATTCAC
ATGGTTAATGCTTTGTAAGAGGGAAAACCCGTCGAAATTTATTAGCAATA
TTGTTTGTTCGAAAAGATCTCTGACCTGAGAAAACCCAGAATAAAGATCT
TGCTATAAAATTTACGTTTTCGAGTTAGAAAAGTAATATACGGAGGAGAT
ATTTTCGTCTTTTTTCTACACTATACTACGTTCTGTAAAATACAACTATG
AAAACCAAAATGGCGACAAGCATTTTCAGTGGATCATGGATTTTCTTCAT
CATCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
TATGCATTTTGAACCTGCCGCCATAAGAACATCCAAAATTTTTGAAGCCT
TAGGATGGACTTTTGGAGTTAACTCAGCCTTAAAATGTTCTTATTTTTGA
TACTTTTTGAGTATTTTTATCCATTTTCCTAAGAAATTGGGTGTTTTAAA
GTCAGCAAAGCCTTAGAATTTTCTTAACTTGTTCTTGATATTTTAGCAAT
CGAAACCTTAGGTTTTTATGTAATTTGTTCTTATAAAAAAACGTGTACCT
CAATCGCTTCGCAACTCTTTACACATACACAAGTCATCTTGTAAGATAGT
AAATACGAAAAGTTAGTAAATTCACTTTTTTCGTTTCAGATGTTCATTTT
TCGATCGACTTCAAGGAACCAACTACCAATCATCTACCAGAATTACGACG
ACTTCATTTCTTACAAAGTGACGCTTTATCGATATGTTTCTGGTTCAAAT
TAAACAATGCTTCTCATTCGAGGTGGATGTCAGCTTTCCTATACACCTCT
GTTGAAATTGAGGGTGATAATGATCTCTCTATTTGGGTCACCAAAGACCA
GGCTCATGTTTATTTGAAAAGCTCTGGCAAGAGAATTGCCCAAACAACTT
TCCAAGAGAATGAATGGTCTCATTTATGTTGGATATGGGAAAATTCAGGT
CGTTGGTTGACCTATGTGAATGGAGATTTAAAGAAAGCTGGTTTCGAAGC
CAATGATAAATTTCAATCCTCTTTTCCGGATAGTTTAGGAAACCTTGTAC
TTGGCCAAGACAAAGATGAAGATACGATCAACCAAGACGCTCAAATGTTG
CATGGTTCTATATCACAATTCATGATTTATAACAGTATGCTAACCAGAGA
TGACGTGGTGGCAGTTTATCAGAATCGGGCGCCCATTGACAACATTGTGG
TTGGTTGGTGGCAGTTTAAAAATCTTACCAATAGCCCAACCAATGAGATT
GCTGAAGGTCCGTTTCCAAAGGAGATCTTGGATAAAGAAGTGGTTTAACT
CGTTTAATGACCTACTTGGGGGATAAAGTATGTTTTGATAGTGGCCAGAT
GAGAACATTCNCGACAGTTTAGGAAATCTTGTGCTTGGCCAAGATAAAGA
TGAAGATACGATCAACCAAGACGCTCAAATGTTGCATGGTTCTATATCAC
AATTCATGATTTATAACAGTATGTTAACCAGAGATGACGTGGTAGCAGTT
TATCAGAATCGGGCGCCCATTGACAACATTGTGGTTGGTTGGTGGCAGTT
TAAAAATATTACCAATAGCCCAACCAATGAAATTGCTGAAGGTCCGTTTC
CAAAGGAGATCTTGGATAGAGAAGTGGTTTAAGTCTTTGGAATGACAAGT
AATTACACTGGAAGGATAAAATGTGTGTTTTGAAAAATGAGCTGAGGACG
TTCTTAGCTCGGAGAGTACACCTTGAGCCTTGGAAAGGTATCATACGGTG
TAAGAGCCAAGACTTAAAGAATGCTGAAAAATAAACTTTAAATAAACAAT
ACGAAAAAAACGGATCGAGTGTCATTCTAGAGTGCTCCTGACTAAATGAT
GGTGTAAAAGTAATCACCTAATCTTAGGTTCCAAATAAACGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058881-exon-scaffold_314-1575043694:322023..322376 | TCONS_00058881-exon-scaffold_314-1575043694:322023..322376 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1575043694:321525..321695 | TCONS_00058881-exon-scaffold_314-1575043694:321525..321695 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1575043694:318170..318787 | TCONS_00058881-exon-scaffold_314-1575043694:318170..318787 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1575043694:317532..317835 | TCONS_00058881-exon-scaffold_314-1575043694:317532..317835 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1510915933:322023..322376 | TCONS_00058881-exon-scaffold_314-1510915933:322023..322376 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1510915933:321525..321695 | TCONS_00058881-exon-scaffold_314-1510915933:321525..321695 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1510915933:318170..318787 | TCONS_00058881-exon-scaffold_314-1510915933:318170..318787 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1510915933:317532..317835 | TCONS_00058881-exon-scaffold_314-1510915933:317532..317835 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1491911889:322023..322376 | TCONS_00058881-exon-scaffold_314-1491911889:322023..322376 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1491911889:321525..321695 | TCONS_00058881-exon-scaffold_314-1491911889:321525..321695 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1491911889:318170..318787 | TCONS_00058881-exon-scaffold_314-1491911889:318170..318787 | Clytia hemisphaerica | exon |
| TCONS_00058881-exon-scaffold_314-1491911889:317532..317835 | TCONS_00058881-exon-scaffold_314-1491911889:317532..317835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:317532..322376 - |
Blast
The following BLAST results are available for this feature:
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