TCONS_00058881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058881
Unique NameTCONS_00058881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058881 ID=TCONS_00058881|Name=TCONS_00058881|organism=Clytia hemisphaerica|type=transcript|length=1447bp
AGCGCTGTTAGAAACCATGAATTTCTTTAATCTTCAACCATTTCTTCCAT
ACATAAATATTAAAGATCTTCACAATGTGGACAGGGAAAAACCAGCAACT
GGATGATGACGAGTCAGACATGAACCTCAACTCTCTTTCTCTTTCAACGC
AATTTGAAGACGAGTACGATGGAAAGAAATATTCGTTCGATTTCAACGCG
TTGAAGAAAGTGCAACGACGCGAACGAGCCAAGATCTTTCTTTTCATGTT
GGTGATTTTTGTTCTGGCTTCAGCATTAGTTGTCATGACGATCTTGTATC
GAAACAAAATGGATGATAATAAAGATTTGAGTATAACTTTAACTGCCACT
AAAGTAAAACTGACAGCAGCCAGAAACAAAACAGCCAATATCGGTGAGAA
ATGTCATTCTACTGGCAACATTACAAAATGTGGAAAAAATGCATATTGTA
GGAAGTCGAATATTGGCAAATATTTCTGTGATTGTTTGACAGGATATATG
AGTGATGGATCAGCTGATTGCCAAGATGTTCATTTTTCGATCGACTTCAA
GGAACCAACTACCAATCATCTACCAGAATTACGACGACTTCATTTCTTAC
AAAGTGACGCTTTATCGATATGTTTCTGGTTCAAATTAAACAATGCTTCT
CATTCGAGGTGGATGTCAGCTTTCCTATACACCTCTGTTGAAATTGAGGG
TGATAATGATCTCTCTATTTGGGTCACCAAAGACCAGGCTCATGTTTATT
TGAAAAGCTCTGGCAAGAGAATTGCCCAAACAACTTTCCAAGAGAATGAA
TGGTCTCATTTATGTTGGATATGGGAAAATTCAGGTCGTTGGTTGACCTA
TGTGAATGGAGATTTAAAGAAAGCTGGTTTCGAAGCCAATGATAAATTTC
AATCCTCTTTTCCGGATAGTTTAGGAAACCTTGTACTTGGCCAAGACAAA
GATGAAGATACGATCAACCAAGACGCTCAAATGTTGCATGGTTCTATATC
ACAATTCATGATTTATAACAGTATGCTAACCAGAGATGACGTGGTGGCAG
TTTATCAGAATCGGGCGCCCATTGACAACATTGTGGTTGGTTGGTGGCAG
TTTAAAAATCTTACCAATAGCCCAACCAATGAGATTGCTGAAGGTCCGTT
TCCAAAGGAGATCTTGGATAGAGAAGTGGTTTAAGTCTTTGGAATGACAA
GTAATTACACTGGAAGGATAAAATGtgtgttttgaaaaatgagCTGAGGA
CGTTCTTAGCTCGGAGAGTACACCTTGAGCCTTGGAAAGGTATCATACGG
TGTAAGAGCCAAGACTTAAAGAATgctgaaaaataaactttaaatAAACA
ATACGAAAAAAACGGATCGAGTGTCATTCTAGAGTGCTCCTGACTAAATG
ATGGTGTAAAAGTAATCACCTaatcttaggttccaaataaacggggg
Run BLAST on NCBI

transcript from alignment at scaffold_314:317532..322376-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058881 ID=TCONS_00058881|Name=TCONS_00058881|organism=Clytia hemisphaerica|type=transcript|length=4845bp|location=Sequence derived from alignment at scaffold_314:317532..322376- (Clytia hemisphaerica)
AGCGCTGTTAGAAACCATGAATTTCTTTAATCTTCAACCATTTCTTCCAT
ACATAAATATTAAAGATCTTCACAATGTGGACAGGGAAAAACCAGCAACT
GGATGATGACGAGTCAGACATGAACCTCAACTCTCTTTCTCTTTCAACGC
AATTTGAAGACGAGTACGATGGAAAGAAATATTCGTTCGATTTCAACGCG
TTGAAGAAAGTGCAACGACGCGAACGAGCCAAGATCTTTCTTTTCATGTT
GGTGATTTTTGTTCTGGCTTCAGCATTAGTTGTCATGACGATCTTGTATC
GAAACAAAATGGATGATAATAAAGATTTGAGTATAACTTTAACTGCCACT
AAAGGTGAGGAGGTTGTCCAGTTGACTTATCAGTACTTACAAAGAGCTAG
CTAGTTTATCCGTTCAAGAAAGCACTTTACAAAAGGAAAGGGGTCACGAC
GACACGACAATGCCATGACTCAATAACTTCAAATTTTCAAACATTTTTTT
ATATAAAATGCGCGTACACACCCTAATATGAAGTGTGATAGAAAAACAGT
GGCGGGATAGGCCGTTGTATGCTCTAGACCCATCGGTACAGCACCGTACC
ATACACGATTTGATCAAGTAATCCATGTTTTTTTTAAATAAACCATATAC
TCCACTGTTAGTTTCATTCTTCTTCTTTCAGTAAAACTGACAGCAGCCAG
AAACAAAACAGCCAATATCGGTGAGAAATGTCATTCTACTGGCAACATTA
CAAAATGTGGAAAAAATGCATATTGTAGGAAGTCGAATATTGGCAAATAT
TTCTGTGATTGTTTGACAGGATATATGAGTGATGGATCAGCTGATTGCCA
AGGTAATGTCACTTCCCAATTGCTACATCAAGGTCAAACTGTACTGTATA
AGGAGGCAGAATGCTCTGAGCATAACACAAAAAAACAAGTTAATATTTTG
ATATTATCTTTTCATTCCATCTTGTGCGGTTTGCATCAATGCCAGTATTT
GATAAATCTTGAGCAATAGCTACAATATCATTTTTATAATGCAAAATCCT
AAACAATGAATTAATACTTTTGGTTTTCATCTTTCATCTATCGAGCTCTT
TTTGCTTGCCATTTGCGAATCGTGTGTGTGACCTATATATATTTTGCTTG
TAACTTGTGAATTGAGTGACCTACACGTTTTCTTATAAGAACCGGCAGGT
ACAAAATGCATAAAACATAATGCATATTGCATAATGCATAATAGTACTGT
GTAATTTACAGAGCGATTTTATATTTTCTAAAACTCTCCTTTGTAGAGGC
TAAAACCATGTAAAACCCTCTTTAGAAGAGTTTCTTAAGTTCAGAGGGAT
TTCCCCAGACATGATATTTACTTTTCGAATCCGAACGAAAGAGAAAACAT
TCGAATCATAACAACAGAAAGGGTTTTCCCTCAGCANAGTACTTACAAAG
AGCTAGCTAGTTTATCCGTTCAAGAAAGCACTTTACAAAAGGAAAGGGGT
CACGACGACATGACAATGCCATGACTCAATAACTTCAAATTTTCAAACAT
TTTTTTATATAAAATGCGCGTACACACCCTAATATGAAGTGTGATAGAAA
AACAGTGGCGGGATAGGCCGTTGTATGCTCTAGACCCATCGGTACAGCAC
CGTACCATACACGATTTGATCAAGTAATCCATGTTTTTTTTAAATAAACC
ATATACTCCACTGTTAGTTTCATTCTTCTTCTTTCAGTAAAACTGACAGC
AGCCAGAAACAAAACAGCCAATATCGGTGAGAAATGTCATTCTACTGGCA
ACATTACAAAATGTGGAAAAAATGCATATTGTAGGAAGTCGAATATTGGC
AAATATTTCTGTGATTGTTTGACAGGATATATGAGTGATGGATCAGCTGA
TTGCCAAGGTAATGTCACTTCCCAATTGCTACATCAAGGTCAAACTGTAC
TGTATAAGGAGGCAGAATGCTCTGAGCATAACACAAAAAAACAAGTTAAT
ATTTTGATATTATCTTTTCATTCCATCTTGTGCGGTTTGCATCAATGCCA
GTATTTGATAAATCTTGAGCAATAGCTACAATATCATTTTTATAATGCAA
AATCCTAAACAATGAATTAATACTTTTGGTTTTCATCTTTCATCTATCGA
GCTCTTTTTGCTTGCCATTTGCGAATCGTGTGTGTGACCTATATATATTT
TGCTTGTAACTTGTGAATTGAGTGACCTACACGTTTTCTTATAAGAACCG
GCAGGTACAAAATGCATAAAACATAATGCATATTGCATAATGCATAATAG
TACTGTGTAATTTACAGAGCGATTTTATATTTTCTAAAACTCTCCTTTGT
AGAGGCTAAAACCATGTAAAACCCTCTTTAGAAGAGTTTCTTAAGTTCAG
AGGGATTTCCCCAGACATGATATTTACTTTTCGAATCCGAACGAAAGAGA
AAACATTCGAATCATAACAACAGAAAGGGTTTTCCCTCAGCATATTATAA
GTAATAAGAAAATGCAAACAGATCAGAAAGATTTCCCCCATCTTTCTTTC
TCAAAAAGGTATAAATACACAAACATTCGAATGTAAAAAGATTGGAAGTC
TATTTTCTTTGATCTAGTTTTCGCATGAAGCTGAGCTCTTTAACTTATAC
ATATTTTGTATATTGGCTGGATATTGGCTTATCTAACAAAAAGCATTCAC
ATGGTTAATGCTTTGTAAGAGGGAAAACCCGTCGAAATTTATTAGCAATA
TTGTTTGTTCGAAAAGATCTCTGACCTGAGAAAACCCAGAATAAAGATCT
TGCTATAAAATTTACGTTTTCGAGTTAGAAAAGTAATATACGGAGGAGAT
ATTTTCGTCTTTTTTCTACACTATACTACGTTCTGTAAAATACAACTATG
AAAACCAAAATGGCGACAAGCATTTTCAGTGGATCATGGATTTTCTTCAT
CATCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
TATGCATTTTGAACCTGCCGCCATAAGAACATCCAAAATTTTTGAAGCCT
TAGGATGGACTTTTGGAGTTAACTCAGCCTTAAAATGTTCTTATTTTTGA
TACTTTTTGAGTATTTTTATCCATTTTCCTAAGAAATTGGGTGTTTTAAA
GTCAGCAAAGCCTTAGAATTTTCTTAACTTGTTCTTGATATTTTAGCAAT
CGAAACCTTAGGTTTTTATGTAATTTGTTCTTATAAAAAAACGTGTACCT
CAATCGCTTCGCAACTCTTTACACATACACAAGTCATCTTGTAAGATAGT
AAATACGAAAAGTTAGTAAATTCACTTTTTTCGTTTCAGATGTTCATTTT
TCGATCGACTTCAAGGAACCAACTACCAATCATCTACCAGAATTACGACG
ACTTCATTTCTTACAAAGTGACGCTTTATCGATATGTTTCTGGTTCAAAT
TAAACAATGCTTCTCATTCGAGGTGGATGTCAGCTTTCCTATACACCTCT
GTTGAAATTGAGGGTGATAATGATCTCTCTATTTGGGTCACCAAAGACCA
GGCTCATGTTTATTTGAAAAGCTCTGGCAAGAGAATTGCCCAAACAACTT
TCCAAGAGAATGAATGGTCTCATTTATGTTGGATATGGGAAAATTCAGGT
CGTTGGTTGACCTATGTGAATGGAGATTTAAAGAAAGCTGGTTTCGAAGC
CAATGATAAATTTCAATCCTCTTTTCCGGATAGTTTAGGAAACCTTGTAC
TTGGCCAAGACAAAGATGAAGATACGATCAACCAAGACGCTCAAATGTTG
CATGGTTCTATATCACAATTCATGATTTATAACAGTATGCTAACCAGAGA
TGACGTGGTGGCAGTTTATCAGAATCGGGCGCCCATTGACAACATTGTGG
TTGGTTGGTGGCAGTTTAAAAATCTTACCAATAGCCCAACCAATGAGATT
GCTGAAGGTCCGTTTCCAAAGGAGATCTTGGATAAAGAAGTGGTTTAACT
CGTTTAATGACCTACTTGGGGGATAAAGTATGTTTTGATAGTGGCCAGAT
GAGAACATTCNCGACAGTTTAGGAAATCTTGTGCTTGGCCAAGATAAAGA
TGAAGATACGATCAACCAAGACGCTCAAATGTTGCATGGTTCTATATCAC
AATTCATGATTTATAACAGTATGTTAACCAGAGATGACGTGGTAGCAGTT
TATCAGAATCGGGCGCCCATTGACAACATTGTGGTTGGTTGGTGGCAGTT
TAAAAATATTACCAATAGCCCAACCAATGAAATTGCTGAAGGTCCGTTTC
CAAAGGAGATCTTGGATAGAGAAGTGGTTTAAGTCTTTGGAATGACAAGT
AATTACACTGGAAGGATAAAATGTGTGTTTTGAAAAATGAGCTGAGGACG
TTCTTAGCTCGGAGAGTACACCTTGAGCCTTGGAAAGGTATCATACGGTG
TAAGAGCCAAGACTTAAAGAATGCTGAAAAATAAACTTTAAATAAACAAT
ACGAAAAAAACGGATCGAGTGTCATTCTAGAGTGCTCCTGACTAAATGAT
GGTGTAAAAGTAATCACCTAATCTTAGGTTCCAAATAAACGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037089XLOC_037089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058881-exon-scaffold_314-1575043694:322023..322376TCONS_00058881-exon-scaffold_314-1575043694:322023..322376Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1575043694:321525..321695TCONS_00058881-exon-scaffold_314-1575043694:321525..321695Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1575043694:318170..318787TCONS_00058881-exon-scaffold_314-1575043694:318170..318787Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1575043694:317532..317835TCONS_00058881-exon-scaffold_314-1575043694:317532..317835Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1510915933:322023..322376TCONS_00058881-exon-scaffold_314-1510915933:322023..322376Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1510915933:321525..321695TCONS_00058881-exon-scaffold_314-1510915933:321525..321695Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1510915933:318170..318787TCONS_00058881-exon-scaffold_314-1510915933:318170..318787Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1510915933:317532..317835TCONS_00058881-exon-scaffold_314-1510915933:317532..317835Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1491911889:322023..322376TCONS_00058881-exon-scaffold_314-1491911889:322023..322376Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1491911889:321525..321695TCONS_00058881-exon-scaffold_314-1491911889:321525..321695Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1491911889:318170..318787TCONS_00058881-exon-scaffold_314-1491911889:318170..318787Clytia hemisphaericaexon
TCONS_00058881-exon-scaffold_314-1491911889:317532..317835TCONS_00058881-exon-scaffold_314-1491911889:317532..317835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:317532..322376 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0960191	0.298923	0.202992	0	0.119609	0	0.230316	0	0.0628449	0	0.0904619	0.0684386	1.81989	1.6719	0	0.108118	1.6007	1.20702	7.76751	4.87796	1.56024	1.32052	1.60626	1.99571	1.7101	3.20949	23.4888	29.6284	1.46372	0.946212
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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