|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058847 ID=TCONS_00058847|Name=TCONS_00058847|organism=Clytia hemisphaerica|type=transcript|length=543bp
taaaaaatatatatcatatACTAAAATAGATCGAACAAGTCTTCAGGATA
CAGTTTTACAGTTAATGGATATTTGTGATGTCAAGAAACTGCCTGTTGAA
GAgagagaatattttttgaacGCTGAAGGCAAAGAAGACTGGGTCAATTT
GGTATTCACTAATTACAAAAAACCTCTGTCTGTCGGTATTGGTATACAGA
ACCAGTTTCTGGACAACGATAATCAGACTGTCAAACAATGGAAAAGTAGC
ATCAGGCTCAAGAAATTCACATCGTTAAGAACATTCAATAGACTAAATAA
ACATAAGGTTTATTTCCAGTTTGTTGGACCGTTTCCAGATTATTTTTATC
ACCAACATGAATTCAGTCATGAATTTACCAAATGCATCAAGATGTTTTTG
GAGTTGTTCTTCCCTGGAAAAAGTGTCATTTTTATGGGAGAAGTGAATCA
TAAAGAACTTGACATAGCCACTCGGATTCACGAAACTTCACAACAACTTC
AACTGTTTCTTCCAGACGTGAACACTTACCTGAAGAACAANgt Run BLAST on NCBI transcript from alignment at scaffold_314:520679..521739+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058847 ID=TCONS_00058847|Name=TCONS_00058847|organism=Clytia hemisphaerica|type=transcript|length=1061bp|location=Sequence derived from alignment at scaffold_314:520679..521739+ (Clytia hemisphaerica)
taaaaaatatatatcatatACTAAAATAGATCGAACAAGTCTTCAGGATA
CAGGTAATTAGATTCATAATTTGTCATTTATAGATATAATATATTACGCA
AACAAAACTGTATAATCCAGGTAGCTTTAACGCACCTTTTCTGATGTGAG
TGCATCATTGTAATTCTCTTGAGATCTTATCATATTGAACCAttttttgg
tttgaaaaatttttaactgtaaggaaataattgaaaatacaaTAAATAAA
TCTGGATAAATTTACTGCTTACTTTTTGTGTTTTCAGTTTTACAGTTAAT
GGATATTTGTGATGTCAAGAAACTGCCTGTTGAAGAgagagaatattttt
tgaacGCTGAAGGCAAAGAAGACTGGGTCAATTTGGTATTCACTAATTAC
AAAAAACCTCTGTCTGTCGGTATTGGTATACAGAACCAGTTTCTGGACAA
CGATAATCAGACTGTCAAACAATGGAAAAGTAGCATCAGGCTCAAGAAAT
TCACATCGTTAAGAACATTCAATAGACTAAATAAACATAAGGTTTATTTC
CAGTTTGTTGGACCGTTTCCAGATTATTTTTATCACCAACATGAATTCAG
TCATGAATTTACCAAATGCATCAAGATGTTTTTGGAGTTGTTCTTCCCTG
GAAAAAGTGTCATTTTTATGGGAGAAGTGAATCATAAAGAACTTGACATA
GCCACTCGGATTCACGAAACTTCACAACAACTTCAACTGTTTCTTCCAGG
TATATAAACCGAGAGCATCTCTTATTATAAATTTCTAACATCTTGACTCC
AATATTTAAACTTTTCTTAATTCTTTGGAAGGCTCTTTTTCTTAAACTTA
CAGTAAGGAAGCtgttaaatattcaaaaaaaagttttgttagAACTAAAA
ACAGTCTGCTATATGTTTTAGATTATTCAATTTTACTTGGAtaaaaaagt
gccaaaaaaggaaaatctgTGTGTCTTTCAGTTTTCTGTCTGCCTGTCTA
TCTGTCTGAGCATTATTTTCACTTTATTCTTAGACGTGAACACTTACCTG
AAGAACAANgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058847-exon-scaffold_314-1491911889:520679..520731 | TCONS_00058847-exon-scaffold_314-1491911889:520679..520731 | Clytia hemisphaerica | exon |
| TCONS_00058847-exon-scaffold_314-1510915933:520679..520731 | TCONS_00058847-exon-scaffold_314-1510915933:520679..520731 | Clytia hemisphaerica | exon |
| TCONS_00058847-exon-scaffold_314-1575043694:520679..520731 | TCONS_00058847-exon-scaffold_314-1575043694:520679..520731 | Clytia hemisphaerica | exon |
| TCONS_00058847-exon-scaffold_314-1491911889:520966..521427 | TCONS_00058847-exon-scaffold_314-1491911889:520966..521427 | Clytia hemisphaerica | exon |
| TCONS_00058847-exon-scaffold_314-1510915933:520966..521427 | TCONS_00058847-exon-scaffold_314-1510915933:520966..521427 | Clytia hemisphaerica | exon |
| TCONS_00058847-exon-scaffold_314-1575043694:520966..521427 | TCONS_00058847-exon-scaffold_314-1575043694:520966..521427 | Clytia hemisphaerica | exon |
| TCONS_00058847-exon-scaffold_314-1491911889:521712..521739 | TCONS_00058847-exon-scaffold_314-1491911889:521712..521739 | Clytia hemisphaerica | exon |
| TCONS_00058847-exon-scaffold_314-1510915933:521712..521739 | TCONS_00058847-exon-scaffold_314-1510915933:521712..521739 | Clytia hemisphaerica | exon |
| TCONS_00058847-exon-scaffold_314-1575043694:521712..521739 | TCONS_00058847-exon-scaffold_314-1575043694:521712..521739 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:520679..521739 + |
Blast
The following BLAST results are available for this feature:
|
