TCONS_00058843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058843
Unique NameTCONS_00058843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058843 ID=TCONS_00058843|Name=TCONS_00058843|organism=Clytia hemisphaerica|type=transcript|length=618bp
gggaatatgggaatatggggagacagggaatatggggagagagggaatat
gggcaataagaaaaatacataaaaagcATTATCTCCTTAATCTAATAGGC
AAGATACATGGAGAACTAGCCCATAATTTGCAATCAAGACATATGGACAG
ACAGAACACAACACTCGCCAGTACGAGCCTTCCTTCAACAATTACAAAGA
GCTCAAGGAAGGCAATTAAAAGGGTACAAGATGATCAAGTATCTTGTTCT
ATTAGtcattattttctttcttcattaTGGCACTTCAAGCATACATAATA
TCACAATTAtgGATGATGGACGGAAGAATATTCCATTATCAACATTTGGA
TTTTTTGAGAATGGCAGGCTCTTGGTTGATCTGGTCAGCTTTAAGTTTAA
AGTTCCAAAGCAGGTCAAGTTTGATGACAATGCCTGGGCTTCCAATGTAA
gtaattttttataatcttatcattttcttgtgtttttttatCATAAACAT
TACATGGAACCAAGTTCATGCTTCTAGGCCAAAAAAAAgtagtcttgttt
ccggaaatcggccgggtgaacttttttttggaaaaaatatatctcacccg
gccgcaaatagaaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_314:480474..485020+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058843 ID=TCONS_00058843|Name=TCONS_00058843|organism=Clytia hemisphaerica|type=transcript|length=4547bp|location=Sequence derived from alignment at scaffold_314:480474..485020+ (Clytia hemisphaerica)
gggaatatgggaatatggggagacagggaatatggggagagagggaatat
gggcaataagaaaaatacataaaaagcATTATCTCCTTAATCTAATAGGC
AAGATACATGGAGAACTAGCCCATAATTTGCAATCAAGACATATGGACAG
ACAGAACACAACACTCGCCAGTACGAGCCTTCCTTCAACAATTACAAAGA
GCTCAAGGAAGGCAATTAAAAGGGTACAAGATGATCAAGTATCTTGTTCT
ATTAGtcattattttctttcttcattaTGGCACTTCAAGCATACATAATA
TCACAATTAtggtaagatttttttctaGTGTTTTCTGTGTCCTCCacacc
agacgtccgcgctcgataggatcgatcatcgggacggctcgatgacgaat
cgatatatgatcgatggattacttaacgatccagATGGGAGATCTAAAAC
CACTATCTGAGAGAGAACAATAGAACAAATCACCCTGAACGAACTGAATT
TACGTCCGGGgtggtgtagcgaaaggatactttttgccaccggacaaata
NTCGGCAGGGTCctgacaaatacaccggacagtccggtgcgtcggcaggg
tcctaaaaaatgtgagtccaatattggactcacagctcgaacccgtcatc
aaattataaaaaaacacacgacggatCTCCTGTctaggtcgtcagtagtc
cgacagtaaaattgactttcagcaagttttattgactgtcaagagcaaat
tctataaaaaatctttctataaaaaaaatatattttacatcgactgtcaa
tatttcccttttttaaagtcaatgtTTTGTATTGACTGTCAATATAAGTA
ATGAACAGTCAATGCAAAAAATTCACTGTTAATATTGACCATCAATATAT
ATTCTattagttttcaagaaaattgattgacagtcaatgtaagatatttt
ttgtcaataatttgcaTTCAACAGTCAATTGCTAACCTGTAACCAgtcaa
tgaaaaacattgaacatgggcctaatcaatgttttttgacctatgattga
ttctcaacaacaaaatacatcttttgcagtgtagctctaaagctttaaaa
cagcatctaataacatgaaaaccagaatatgattcttcaatgggaatcaa
aactataaagtgcacttacaaacatcaatttgtcagatctaacaaaattt
atcacggcactgtcatcattgacaataaaacaaacaatattctgtcagga
gccttgtaaacattccaacaacttccatcgaaatgatctatcacagctca
gtctaccattttagcgtggtccgaggattgagccgagaactctcgcagag
cgcctgagctcccgcgcggcacgcaccgcggggatgaaaaacttcaatct
gtcaatcattttctcaagcgaaaagtacgcgaagcgattctagctttacg
atagtgccgcggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTACATCAATATGctttcttacctg
tctttaaaaatataaataaaagtaatcacggaaaaggacgcaaaaaaaaa
agacataagtgtgagaacagagtaatcaaacNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNagcacttacaaatcgattatggtttca
aaactttccggtgaatttccctttttctcaaatattaggACCATGATTGT
AATGATAAGAATGTAGCGTTGCAAGATTTGACCTATTGAACTACTGCCTA
TATGGATTCTATCAAATGATGCACAGTATCTAGTCAAGAATCCAGATCCA
GCTGACAATTTCAAATAATACAATATAAAAGAAAGTCCTAAAATGTTAAC
TTTTACCTGAATGATGTACTAGTTTTGAGtatgaaatatatttaaaaaaa
actcactttgttgtttttcatgtattgaaaagtcaaaatgaacatTTTAG
GACTTTCTTTTATATTGTATCTAGTCAAGAAGTTAGTAATTTACCCTTTC
CTCTGGAATGGTTgtttagagaaaaagaaaataaattcaaggaaaattaa
aataaattgcATCATTTTTTCTTCAGCCAAATATCTTTGGTGTTGCTTAC
AGTAAACAAATTCCATACTTGAAAACAGGGGTCATAGAAAAAATTTAGAA
TGTTTTTATTGGCTCTGGACTCTGCCTTTATACATAATacaatattcaca
aaattgaaCCTCTGCAATCATCATCATGTCATGTAAAATGATTAATTTTT
GGCTTTTCCTTCTTAATTCCTTTACCAATATCTGTTTAAAGAAAGGAGCT
AAATCTCAGAGAGCTGGAATCTTAAAATTCAGGGAATCCTCAAGTCTCTG
GGGCAATAATGTAAAGATCTGAACGAATTTGTAAAACATTGAAAGTCCTT
TATCAAAGTTTATTACATTTGCATAACACTAGTCTTTCATTACTCTGTAT
CAATTTATGATCTTTAAGAGTTGATCGTAAAGTGTCTTGAGTTAATAAAC
TTGCAGAAgagaataaaaattcatttcttccTAATAGTATAAGTGGAATA
CTTTGGAGAAGGAAAAACTTCATGAAATCATATCCAGTAGAATGAATCAT
ATGTGGTCGAAAAGGCAGTTAAAAGGACctaattctttttaaattgcCAA
AAATATATACTGTAGCTGGttggttaaaaaaattgaaagattgaTAATCT
CACTCAACAAAGTAATTTGGGTAAGATAAGATAATAAGACTTTTCATAGT
AAAACAGTACAGGTAATAGTCAAAACCAATTTCTATTTATTAGCACACAC
TCTTagatgtttgaaatattttgaagtaatttttgttacaTACGTCATTT
gtcattttcttaaaatttgcaCCGTATTTGCACTGGTATTGAATTGTCAT
ATTTCCTTAcaaaaactaaaattaaaaacattggaTTCTGACGAGTTTTC
CGATTaccttcttataaaaatgttcttctCATTTTTGAAGGATGATGGAC
GGAAGAATATTCCATTATCAACATTTGGATTTTTTGAGAATGGCAGGCTC
TTGGTTGATCTGGTCAGCTTTAAGTTTAAAGTTCCAAAGCAGGTCAAGTT
TGATGACAATGCCTGGGCTTCCAATGTAAgtaattttttataatcttatc
attttcttgtgtttttttatCATAAACATTACATGGAACCAAGTTCATGC
TTCTAGGCCAAAAAAAAgtagtcttgtttccggaaatcggccgggtgaac
ttttttttggaaaaaatatatctcacccggccgcaaatagaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037070XLOC_037070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058843-exon-scaffold_314-1491911889:480474..480784TCONS_00058843-exon-scaffold_314-1491911889:480474..480784Clytia hemisphaericaexon
TCONS_00058843-exon-scaffold_314-1510915933:480474..480784TCONS_00058843-exon-scaffold_314-1510915933:480474..480784Clytia hemisphaericaexon
TCONS_00058843-exon-scaffold_314-1575043694:480474..480784TCONS_00058843-exon-scaffold_314-1575043694:480474..480784Clytia hemisphaericaexon
TCONS_00058843-exon-scaffold_314-1491911889:484714..485020TCONS_00058843-exon-scaffold_314-1491911889:484714..485020Clytia hemisphaericaexon
TCONS_00058843-exon-scaffold_314-1510915933:484714..485020TCONS_00058843-exon-scaffold_314-1510915933:484714..485020Clytia hemisphaericaexon
TCONS_00058843-exon-scaffold_314-1575043694:484714..485020TCONS_00058843-exon-scaffold_314-1575043694:484714..485020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:480474..485020 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.4418	29.7568	33.0772	26.7512	10.4019	8.9605	10.1484	9.998	16.5771	14.4829	18.7153	15.3659	13.4417	12.6841	10.2439	11.3638	17.191	18.4851	9.21842	13.503	20.54	24.9099	31.8264	36.0781	10.9848	11.8027	18.4285	13.195	25.5077	25.7897
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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