TCONS_00058828 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058828
Unique Name	TCONS_00058828
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1226

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_314:390964..395768+
coding sequence from alignment at scaffold_314:390964..395768+

transcript sequence

>TCONS_00058828 ID=TCONS_00058828|Name=TCONS_00058828|organism=Clytia hemisphaerica|type=transcript|length=1226bp
CATCacggaaccaatagctcattggttgtaagtgacgtaaaatcagtcaa
aacgtcactttcaaccaatcagctattgggtggaatggaagacattgcaa
tggtgcatatcatgaatatcttAAATCGCAGACTAGTGCAATGATTAACC
AATTAATCTTTTTTAACCCTCTGAAGGTATGAACCACAGAAAAATGAATG
GCAAATGGTTTGCAGTATGAACAAACGTAGATGTGGCGTTGGTGTATCAG
TTCTAGATGAATTACTTTATGCTGTTGGAGGACATGATGGTTCAAGCTAT
CTCAACTCTGTTGAAAGATATGACCCCAAAACAAACCAGTGGAGCTCTGA
CGTTTCCCCAACAAGCACTTGTCGTACAAGTGTAGGCGTTGCTGTTCTTG
ATGGTTATTTGTATGCAGTTGGTGGGCAAGATGGTGTATCTTGTTTGAAT
ATTGTTGAACGCTACGATTCCAAAGCTAATTCTTGGTCACGTGTCACTCC
AATGAGCTGTAGGCGTCTAGgGGTTGCGGTGTCAGTATTGGATGGATATC
TATATGCGATTGGTGGATCAGACGGAACATCGCCTTTAGCTTCAGTTGAA
AGGTTTGATCCAGCAACTAGTACCTGGACATCAGCCAAACAAATGGGAAC
CAAACGTAAACATTTAGGTGCTGCTGTTTACCAAGGATGTATATATGCTG
TTGGTGGTAGAGATGATGCTACAGAGTTGAGCAGTGCTGAGAAATATGAC
GCAAAAAGTAACACTTGGATTCCAGTTGTGGCGCTGAACTCGAGAAGAAG
TGGTGTTGGTTTATCAGTAGTTAATGGACAATTAATTGCAGTGGGTGGTT
TTGATGGTACAACCTATTTGAAATCCATCGAAATTTACGACCCTACTGGG
AAACAGTGGAAATTGCAATGTGGTATGAATTACAGGAGGCTTGGAGGAGG
TGTTGGAGTTGTGACGCTGCACCAATCTGAAGGTTATACGTGGGGTTATT
TTCAAGCAGGTTGTATACAGTAAATGCATCACATCCAACAGCATTTTCGG
AGTTAGAAAATTTATTGTTACATTAAGAATTGCttttgtatttaattttt
cagttcaGAAAGCTCGACGACTTCATAAAAGAAAAACCAATTTTAGGATC
TTAGAATTCCAAAAAGTGTGATTTCTGTACTGAAGTTTCAAATTAATAAA
GTTGGTATAAAACTGATACCTTGTCC

Run BLAST on NCBI

protein sequence of TCONS_00058828-protein

>TCONS_00058828-protein ID=TCONS_00058828-protein|Name=TCONS_00058828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MVCSMNKRRCGVGVSVLDELLYAVGGHDGSSYLNSVERYDPKTNQWSSDV
SPTSTCRTSVGVAVLDGYLYAVGGQDGVSCLNIVERYDSKANSWSRVTPM
SCRRLGVAVSVLDGYLYAIGGSDGTSPLASVERFDPATSTWTSAKQMGTK
RKHLGAAVYQGCIYAVGGRDDATELSSAEKYDAKSNTWIPVVALNSRRSG
VGLSVVNGQLIAVGGFDGTTYLKSIEIYDPTGKQWKLQCGMNYRRLGGGV
GVVTLHQSEGYTWGYFQAGCIQ

Run BLAST on NCBI

transcript from alignment at scaffold_314:390964..395768+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058828 ID=TCONS_00058828|Name=TCONS_00058828|organism=Clytia hemisphaerica|type=transcript|length=4805bp|location=Sequence derived from alignment at scaffold_314:390964..395768+ (Clytia hemisphaerica)
CATCacggaaccaatagctcattggttgtaagtgacgtaaaatcagtcaa
aacgtcactttcaaccaatcagctattgggtggaatggaagacattgcaa
tggtgcatatcatgaatatcttAAATCGCAGACTAGTGCAATGATTAACC
AATTAATCTTTTTTAACCCTCTGAAGGTATGAACCACAGAAAAATGAATG
GCAAATGGTTTGCAGTATGAACAAACGTAGATGTGGCGTTGGTGTATCAG
TTCTAGATGAATTACTTTATGCTGTTGGAGGACATGATGGTTCAAGCTAT
CTCAACTCTGTTGAAAGATATGACCCCAAAACAAACCAGTGGAGCTCTGA
CGTTTCCCCAACAAGCACTTGTCGTACAAGTGTAGGCGTTGCTGTTCTTG
ATGGGTAAGATgctcaatttattttttatgatattttacaTGTAtgtatt
attttaaaaatatttgaccTTCTGCATTCCTTTTAATTGAGAAATTCCTT
TAATCAAATTTAGAATTGGAAACATATCTATCAAGCATAATAatagggtg
gggcgtcaaatgtcaaagtcagaaaattcaagatgtagtgtttttttatg
aaaatttaacctattgtgaggcattctgcgcaattctTAAggtcaaaagt
tcaaaattggccgaacccccctgggggtactgattcgcactacaggcaat
aattggaaaaaatggcattttctggccgtttcaggcctgtaaatatgtca
aaactattgcaaatcttatttttttcacttgctgtactaaattttatgaa
gaaacaacaaaataatcatattggtttgaaaattgtacccattggagccc
taaacgagccgttttaagccaaatttgggtagcaaaatgctttttaaggc
caattttgcaagctcataaactttaaactaattgattcacatatctgaaa
ttttcagagatggaagtcttcaataaagtctttaagcaaaatgaatttca
agtttttcacttttttcaataaatcataatggcgtcttcaaaaatcgctt
tttagcaaaaaaaaatcatatttctcaaaaaatagcattttttaaggcaa
gcttctacaaactgagtttaaatgctNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAgtac
tccaggaaaatcaaaatcatttgggtttaggatttgggtatatccgccat
tatggaattgaaatctgtgctaaaactggctaaattgcaacatttaaagc
aaaaatcccatattgacttaaaaactgctctaatatggcaatagacatga
acctaaaatctttttgcagtgatagtattctgtaaATACTCTAGGGGTAA
AAACTATTCAGGTATAAGATGCTTCTGGACTGaagccagttttaaaatgt
atataatatttcaagctaaaattcatctttttttgaCGGAACAAGTCTTG
AAAATGGAAATGTAAGTGGGCTATAAAAGAATTGTTGAGTGAAAtgggat
tttttaaataatttatttcaactagtatttctaaattaaaggaTTGTAAA
TTCACACTCTTTGCTTAatataatatacaaaatatttagtcaattatgat
gtattttaacagagatttcatttccataagggtggatgtaaacaaatctc
agactgaaatgattttgtttttccaggaatattcacagaatactatcact
tcataaaaatttgggtccatgtctattgtcattttagagcagtttttatt
caaaaacggggtttttgcttgaaacgttgtattttagccagttttaacac
atatttcaattccataatggcggatatacccaaatcctaaacccNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNatttccagaagactatcactgcaaaaagattttaggttcatgtctatt
gccatttttaagattttttgagtcaaaaattggatttttgattgaaatat
tgcgttttaacAGGAATTTctattccaaaatggtggatatacccaaatcc
caagcccagatgactttgattttcctgtagtatttccagaatactatcac
tgcaagaaagtttggacccatgtctattgacattttagagattttttcag
tccaaatttgggtttttgcctgaaaaatggctcttagcaggaatttaatt
tccataatggcagacgtAGAcacatcccagacccaaatgattttgatttc
cctggagtatctccagtatactatcactgcaaaaaaaaaatcagtcagca
tttaaactcagtttgtagaagcttgccttaaaaaatgctattttttgaga
aatatgacttttttttgctaaaaagcgatttttgaagacgccaNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCtatattgaagacttccatctctgaaaa
tttcagacatgtgaatcaatcagtttaaagtttatgagcttgcaaaattg
gccttaaaaagcattttgctacccaaatttggcttaaaacggctcgtata
gggctccaatgggcacaattttcaaaccaatatgattattttgtcgtttc
ttcataaaatttagtacagcaagtgaaaaaaataagatttgcaatagttt
tgacatatttacaggcctgaaacggccagaaaatgccattttttccaatt
tttgcctgtagtgcgaatcagtacccccaggggggttcggccaattttga
acttttgaccTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcgcagaatgcctcacaataggttaa
attttcataaaaaaacactacatcttgaattttctgactttgccccaaaa
atgactgttgacgccctaccctaaTAATAATTCTTATTTTATAAAGCTTA
ATTTCATTTCTTGATAGTTATTTGTATGCAGTTGGTGGGCAAGATGGTGT
ATCTTGTTTGAATATTGTTGAACGCTACGATTCCAAAGCTAATTCTTGGT
CACGTGTCACTCCAATGAGCTGTAGGCGTCTAGGTATGTTTTGATGTGTA
GAATTGGTGTAGTTTTTATCGATTTCCAATCagtaaaaattataattgtt
aTTGATGTTATAAGggtatttaaatattttgaatattttcaaatttttga
atttttagataTATTGAGGTATGTTAGCTATCATCCTTTTAGCTTTTCAT
TCACTGTTCGATAGTTTTCAATTCAGAGAACTAttcttctttttgatttt
caggGGTTGCGGTGTCAGTATTGGATGGATATCTATATGCGATTGGTGGA
TCAGACGGAACATCGCCTTTAGCTTCAGTTGAAAGGTTTGATCCAGCAAC
TAGTACCTGGACATCAGCCAAACAAATGGGAACCAAACGTAAACATTTAG
GTGCTGCTGTTTACCAAGGATGTATATATGCTGGTAAGAACAATCTTGAA
AGTATGATCTTAAGATGCACCTGTCTTGTAACACTATTCGTTATTTCTAA
TACAAAATAAAGACTGTTTTCTAAGCTAATGTGTTGCTTCTTTCTAACTT
AAAATCAGTATTATATACTAGGTGGTGAATCCCTTAACTTTGTGTGCAAC
ATGGGCTGTCCAAAGTACTCATTAACCATGTctgtttgttattatttttt
atgattttaattttttccatttattCTAGTTGGTGGTAGAGATGATGCTA
CAGAGTTGAGCAGTGCTGAGAAATATGACGCAAAAAGTAACACTTGGATT
CCAGTTGTGGCGCTGAACTCGAGAAGAAGTGGTGTTGGTTTATCAGTAGT
TAATGGACAATTAATTGCAGTGGGTGGTTTTGATGGTACAACCTATTTGA
AATCCATCGAAATTTACGACCCTACTGGGAAACAGTGGAAATTGCAATGT
GGTATGAATTACAGGAGGCTTGGAGGAGGTGTTGGAGTTGTGACGCTGCA
CCAATCTGAAGGTTATACGTGGGGTTATTTTCAAGCAGGTTGTATACAGT
AAATGCATCACATCCAACAGCATTTTCGGAGTTAGAAAATTTATTGTTAC
ATTAAGAATTGCttttgtatttaatttttcagttcaGAAAGCTCGACGAC
TTCATAAAAGAAAAACCAATTTTAGGATCTTAGAATTCCAAAAAGTGTGA
TTTCTGTACTGAAGTTTCAAATTAATAAAGTTGGTATAAAACTGATACCT
TGTCC

Coding sequence (CDS) from alignment at scaffold_314:390964..395768+

>TCONS_00058828 ID=TCONS_00058828|Name=TCONS_00058828|organism=Clytia hemisphaerica|type=CDS|length=3276bp|location=Sequence derived from alignment at scaffold_314:390964..395768+ (Clytia hemisphaerica)
ATGGTTTGCAGTATGAACAAACGTAGATGTGGCGTTGGTGTATCAGTTCT
AGATGAATTACTTTATGCTGTTGGAGGACATGATGGTTCAAGCTATCTCA
ACTCTGTTGAAAGATATGACCCCAAAACAAACCAGTGGAGCTCTGACGTT
TCCCCAACAAGCACTTGTCGTACAAGTGTAGGCGTTGCTGTTCTTGATGG
TTATTTGTATGCAGTTGGTGGGCAAGATGGTGTATCTTGTTTGAATATTG
TTGAACGCTACGATTCCAAAGCTAATTCTTGGTCACGTGTCACTCCAATG
AGCTGTAGGCGTCTAGgGGTTGCGGTGTCAGTATTGGATGGATATCTATA
TGCGATTGGTGGATCAGACGGAACATCGCCTTTAGCTTCAGTTGAAAGGT
TTGATCCAGCAACTAGTACCTGGACATCAGCCAAACAAATGGGAACCAAA
CGTAAACATTTAGGTGCTGCTGTTTACCAAGGATGTATATATGCTGTTGG
TGGTAGAGATGATGCTACAGAGTTGAGCAGTGCTGAGAAATATGACGCAA
AAAGTAACACTTGGATTCCAGTTGTGGCGCTGAACTCGAGAAGAAGTGGT
GTTGGTTTATCAGTAGTTAATGGACAATTAATTGCAGTGGGTGGTTTTGA
TGGTACAACCTATTTGAAATCCATCGAAATTTACGACCCTACTGGGAAAC
AGTGGAAATTGCAATGTGGTATGAATTACAGGAGGCTTGGAGGAGGTGTT
GGAGTTGTGACGCTGCACCAATCTGAAGGTTATACGTGGGGTTATTTTCA
AGCAGGTTGTATACAGTAAATGGTTTGCAGTATGAACAAACGTAGATGTG
GCGTTGGTGTATCAGTTCTAGATGAATTACTTTATGCTGTTGGAGGACAT
GATGGTTCAAGCTATCTCAACTCTGTTGAAAGATATGACCCCAAAACAAA
CCAGTGGAGCTCTGACGTTTCCCCAACAAGCACTTGTCGTACAAGTGTAG
GCGTTGCTGTTCTTGATGGTTATTTGTATGCAGTTGGTGGGCAAGATGGT
GTATCTTGTTTGAATATTGTTGAACGCTACGATTCCAAAGCTAATTCTTG
GTCACGTGTCACTCCAATGAGCTGTAGGCGTCTAGgGGTTGCGGTGTCAG
TATTGGATGGATATCTATATGCGATTGGTGGATCAGACGGAACATCGCCT
TTAGCTTCAGTTGAAAGGTTTGATCCAGCAACTAGTACCTGGACATCAGC
CAAACAAATGGGAACCAAACGTAAACATTTAGGTGCTGCTGTTTACCAAG
GATGTATATATGCTGTTGGTGGTAGAGATGATGCTACAGAGTTGAGCAGT
GCTGAGAAATATGACGCAAAAAGTAACACTTGGATTCCAGTTGTGGCGCT
GAACTCGAGAAGAAGTGGTGTTGGTTTATCAGTAGTTAATGGACAATTAA
TTGCAGTGGGTGGTTTTGATGGTACAACCTATTTGAAATCCATCGAAATT
TACGACCCTACTGGGAAACAGTGGAAATTGCAATGTGGTATGAATTACAG
GAGGCTTGGAGGAGGTGTTGGAGTTGTGACGCTGCACCAATCTGAAGGTT
ATACGTGGGGTTATTTTCAAGCAGGTTGTATACAGTAAATGGTTTGCAGT
ATGAACAAACGTAGATGTGGCGTTGGTGTATCAGTTCTAGATGAATTACT
TTATGCTGTTGGAGGACATGATGGTTCAAGCTATCTCAACTCTGTTGAAA
GATATGACCCCAAAACAAACCAGTGGAGCTCTGACGTTTCCCCAACAAGC
ACTTGTCGTACAAGTGTAGGCGTTGCTGTTCTTGATGGTTATTTGTATGC
AGTTGGTGGGCAAGATGGTGTATCTTGTTTGAATATTGTTGAACGCTACG
ATTCCAAAGCTAATTCTTGGTCACGTGTCACTCCAATGAGCTGTAGGCGT
CTAGgGGTTGCGGTGTCAGTATTGGATGGATATCTATATGCGATTGGTGG
ATCAGACGGAACATCGCCTTTAGCTTCAGTTGAAAGGTTTGATCCAGCAA
CTAGTACCTGGACATCAGCCAAACAAATGGGAACCAAACGTAAACATTTA
GGTGCTGCTGTTTACCAAGGATGTATATATGCTGTTGGTGGTAGAGATGA
TGCTACAGAGTTGAGCAGTGCTGAGAAATATGACGCAAAAAGTAACACTT
GGATTCCAGTTGTGGCGCTGAACTCGAGAAGAAGTGGTGTTGGTTTATCA
GTAGTTAATGGACAATTAATTGCAGTGGGTGGTTTTGATGGTACAACCTA
TTTGAAATCCATCGAAATTTACGACCCTACTGGGAAACAGTGGAAATTGC
AATGTGGTATGAATTACAGGAGGCTTGGAGGAGGTGTTGGAGTTGTGACG
CTGCACCAATCTGAAGGTTATACGTGGGGTTATTTTCAAGCAGGTTGTAT
ACAGTAAATGGTTTGCAGTATGAACAAACGTAGATGTGGCGTTGGTGTAT
CAGTTCTAGATGAATTACTTTATGCTGTTGGAGGACATGATGGTTCAAGC
TATCTCAACTCTGTTGAAAGATATGACCCCAAAACAAACCAGTGGAGCTC
TGACGTTTCCCCAACAAGCACTTGTCGTACAAGTGTAGGCGTTGCTGTTC
TTGATGGTTATTTGTATGCAGTTGGTGGGCAAGATGGTGTATCTTGTTTG
AATATTGTTGAACGCTACGATTCCAAAGCTAATTCTTGGTCACGTGTCAC
TCCAATGAGCTGTAGGCGTCTAGgGGTTGCGGTGTCAGTATTGGATGGAT
ATCTATATGCGATTGGTGGATCAGACGGAACATCGCCTTTAGCTTCAGTT
GAAAGGTTTGATCCAGCAACTAGTACCTGGACATCAGCCAAACAAATGGG
AACCAAACGTAAACATTTAGGTGCTGCTGTTTACCAAGGATGTATATATG
CTGTTGGTGGTAGAGATGATGCTACAGAGTTGAGCAGTGCTGAGAAATAT
GACGCAAAAAGTAACACTTGGATTCCAGTTGTGGCGCTGAACTCGAGAAG
AAGTGGTGTTGGTTTATCAGTAGTTAATGGACAATTAATTGCAGTGGGTG
GTTTTGATGGTACAACCTATTTGAAATCCATCGAAATTTACGACCCTACT
GGGAAACAGTGGAAATTGCAATGTGGTATGAATTACAGGAGGCTTGGAGG
AGGTGTTGGAGTTGTGACGCTGCACCAATCTGAAGGTTATACGTGGGGTT
ATTTTCAAGCAGGTTGTATACAGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037066	XLOC_037066	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058828-exon-scaffold_314-1491911889:390964..391367	TCONS_00058828-exon-scaffold_314-1491911889:390964..391367	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1510915933:390964..391367	TCONS_00058828-exon-scaffold_314-1510915933:390964..391367	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1575043694:390964..391367	TCONS_00058828-exon-scaffold_314-1575043694:390964..391367	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1491911889:394481..394596	TCONS_00058828-exon-scaffold_314-1491911889:394481..394596	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1510915933:394481..394596	TCONS_00058828-exon-scaffold_314-1510915933:394481..394596	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1575043694:394481..394596	TCONS_00058828-exon-scaffold_314-1575043694:394481..394596	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1491911889:394817..394996	TCONS_00058828-exon-scaffold_314-1491911889:394817..394996	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1510915933:394817..394996	TCONS_00058828-exon-scaffold_314-1510915933:394817..394996	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1575043694:394817..394996	TCONS_00058828-exon-scaffold_314-1575043694:394817..394996	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1491911889:395243..395768	TCONS_00058828-exon-scaffold_314-1491911889:395243..395768	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1510915933:395243..395768	TCONS_00058828-exon-scaffold_314-1510915933:395243..395768	Clytia hemisphaerica	exon
TCONS_00058828-exon-scaffold_314-1575043694:395243..395768	TCONS_00058828-exon-scaffold_314-1575043694:395243..395768	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058828-protein	TCONS_00058828-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_314	supercontig	scaffold_314:390964..395768 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.635	27.111	8.73038	4.37057	25.9401	18.1633	14.4615	17.2672	9.48515	12.5367	11.6935	5.88114	7.78766	7.43089	6.20059	10.1086	13.6646	10.191	6.30415	5.37402	8.21073	7.39115	31.2544	26.8196	11.9063	14.2	11.7321	9.56127	24.4462	23.9214

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006652	Kelch_1
IPR015915	Kelch-typ_b-propeller

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00058828 vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4)

HSP 1 Score: 421.009 bits (1081), Expect = 1.255e-141
Identity = 205/273 (75.09%), Postives = 235/273 (86.08%), Query Frame = 1

Query:  175 RYEPQKNEWQMVCSMNKRRCGVGVSVLDELLYAVGGHDGSSYLNSVERYDPKTNQWSSDVSPTSTCRTSVGVAVLDGYLYAVGGQDGVSCLNIVERYDSKANSWSRVTPMSCRRLGVAVSVLDGYLYAIGGSDGTSPLASVERFDPATSTWTSAKQMGTKRKHLGAAVYQGCIYAVGGRDDATELSSAEKYDAKSNTWIPVVALNSRRSGVGLSVVNGQLIAVGGFDGTTYLKSIEIYDPTGKQWKLQCGMNYRRLXXXXXXXTLHQSEGYTW 993
            RY+PQ NEW+MV SM+KRRCGVGVSVLD+LLYAVGGHDGSSYLNSVERYDPKTNQWSSDV+PTSTCRTSVGVAVL G+LYAVGGQDGVSCLNIVERYD K N W+RV  MS RRLGVAV+VL G+LYA+GGSDGTSPL +VER++P  + W +   MGT+RKHLG AVYQ  IYAVGGRDD TELSSAE+Y+ ++N W PVVA+ SRRSGVGL+VVNGQL+AVGGFDGTTYLK+IE++DP    W+L  GMNYRRLGGGVGV+ +   E + W
Sbjct:  337 RYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVIKMTHCESHIW 609

HSP 2 Score: 154.836 bits (390), Expect = 3.035e-41
Identity = 84/178 (47.19%), Postives = 111/178 (62.36%), Query Frame = 1

Query:  409 LYAVGGQDGVSCLNIVERYDSKANSWSRVTPMSCRRLGVAVSVLDGYLYAIGGSDGTSPLASVERFDPATSTWTS-AKQMGTKRKHLGAAVYQGCIYAVGGRDDATELSSAEKYDAKSNTWIPVVALNSRRSGVGLSVVNGQLIAVGGFDGTTYLKSIEIYDPTGKQWKLQCGMNYRR 939
            L+AVGG      ++ VERYD + N W  V  MS RR GV VSVLD  LYA+GG DG+S L SVER+DP T+ W+S      T R  +G AV  G +YAVGG+D  + L+  E+YD K N W  V ++++RR GV ++V+ G L AVGG DGT+ L ++E Y+P   +W     M  RR
Sbjct:  320 LFAVGGWCSGDAISSVERYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPMGTRR 497

HSP 3 Score: 112.849 bits (281), Expect = 7.729e-27
Identity = 58/125 (46.40%), Postives = 82/125 (65.60%), Query Frame = 1

Query:  166 TL*RYEPQKNEWQMVCSMNKRRCGVGVSVLDELLYAVGGHDGSSYLNSVERYDPKTNQWSSDVSPTSTCRTSVGVAVLDGYLYAVGGQDGVSCLNIVERYDSKANSWSRVTPMSCRRLGVAVSVL 540
            T+ RY PQ+N W  +  M  RR  +G +V  +++YAVGG D ++ L+S ERY+P+TNQWS  V+ TS  R+ VG+AV++G L AVGG DG + L  +E +D  AN+W     M+ RRLG  V V+
Sbjct:  476 TVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSR-RSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVI 599

The following BLAST results are available for this feature:

BLAST of TCONS_00058828 vs. Swiss-Prot (Human)

BLAST of TCONS_00058828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KLH20	1.255e-141	75.09	Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE...	[more]

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TCONS_00058828 (transcript) - C. hemisphaerica