TCONS_00058766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058766
Unique NameTCONS_00058766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058766 ID=TCONS_00058766|Name=TCONS_00058766|organism=Clytia hemisphaerica|type=transcript|length=699bp
TAGCGAAGTAAGAGATTTAGCTCCAATATCTTGACATCCGTGTTGAACAC
CCGCGGTAAGGTAAGGAATGAATTTGAACAAACTCCCTTTATCTTCCACT
GAACCACTGACACCTTGAGCAACTTTCACTTTGTCACTTTCCACGAAATA
GCGACTTTGACTTCCTTTGCTTTTCATAGCACCGAGCGATCCCATACCAC
GGTATCGCTTCAAACGAACGCCATTTTGATAGAAGTATTCACCAGGCGCT
TCAAAAGTACCAGCTAATAACGAGCCCATCATCACAGTCGATGCTCCCAG
CGTTAACGCTTTAATGATGTGTCCAGCATTTGAAATACCCCCGTCAGCGA
TACAAGGAACACCGAAACGACGGGCGTATTCACTGACATAAAAGACGGCA
GTACCTTGGGGCCGCCCAACAGCACACACTTCTTGTGTGATACAAATGGA
TCCACTACCCATACCCACACGTAAGCCATCAGCGCCGGCATCAATTAAAT
TCTTAGCTTGTGCAGCAGTGACAACGTTTCCAGCAATGACTTCTAGATTA
GGATATTTGGCTTTGATTTCTTTGATACGTTCGATTTGGAAGGATGAATT
TCCTTGTGAAGAATCGAGAACAACAACATCAACCCCTGCTTCAACGAGTG
CTGCTAGACGTGGCACATCTTCGTCATGTGTACTGATAGCAGCTCCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_313:537766..538524-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058766 ID=TCONS_00058766|Name=TCONS_00058766|organism=Clytia hemisphaerica|type=transcript|length=759bp|location=Sequence derived from alignment at scaffold_313:537766..538524- (Clytia hemisphaerica)
TAGCGAAGTAAGAGATTTAGCTCCAATATCTTGACATCCGTGTTGAACAC
CCGCGGTAAGGTAAGGGATNAGAGATTTAGCTCCAATATCTTGACATCCG
TGTTGAACACCCGCAGTAAGGTAAGGAATGAATTTGAACAAACTCCCTTT
ATCTTCCACTGAACCACTGACACCTTGAGCAACTTTCACTTTGTCACTTT
CCACGAAATAGCGACTTTGACTTCCTTTGCTTTTCATAGCACCGAGCGAT
CCCATACCACGGTATCGCTTCAAACGAACGCCATTTTGATAGAAGTATTC
ACCAGGCGCTTCAAAAGTACCAGCTAATAACGAGCCCATCATCACAGTCG
ATGCTCCCAGCGTTAACGCTTTAATGATGTGTCCAGCATTTGAAATACCC
CCGTCAGCGATACAAGGAACACCGAAACGACGGGCGTATTCACTGACATA
AAAGACGGCAGTACCTTGGGGCCGCCCAACAGCACACACTTCTTGTGTGA
TACAAATGGATCCACTACCCATACCCACACGTAAGCCATCAGCGCCGGCA
TCAATTAAATTCTTAGCTTGTGCAGCAGTGACAACGTTTCCAGCAATGAC
TTCTAGATTAGGATATTTGGCTTTGATTTCTTTGATACGTTCGATTTGGA
AGGATGAATTTCCTTGTGAAGAATCGAGAACAACAACATCAACCCCTGCT
TCAACGAGTGCTGCTAGACGTGGCACATCTTCGTCATGTGTACTGATAGC
AGCTCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037012XLOC_037012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058766-exon-scaffold_313-1575043694:538465..538524TCONS_00058766-exon-scaffold_313-1575043694:538465..538524Clytia hemisphaericaexon
TCONS_00058766-exon-scaffold_313-1575043694:537766..538404TCONS_00058766-exon-scaffold_313-1575043694:537766..538404Clytia hemisphaericaexon
TCONS_00058766-exon-scaffold_313-1510915933:538465..538524TCONS_00058766-exon-scaffold_313-1510915933:538465..538524Clytia hemisphaericaexon
TCONS_00058766-exon-scaffold_313-1510915933:537766..538404TCONS_00058766-exon-scaffold_313-1510915933:537766..538404Clytia hemisphaericaexon
TCONS_00058766-exon-scaffold_313-1491911889:538465..538524TCONS_00058766-exon-scaffold_313-1491911889:538465..538524Clytia hemisphaericaexon
TCONS_00058766-exon-scaffold_313-1491911889:537766..538404TCONS_00058766-exon-scaffold_313-1491911889:537766..538404Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:537766..538524 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.9855	10.9973	6.47394	3.21388	1.00926	0	0	0.0024344	34.4819	31.9898	18.4967	21.6022	21.155	13.3838	23.7698	24.4789	22.5783	23.2563	17.465	15.666	12.7136	18.535	13.4851	13.7895	3.23549	0	49.02	32.7493	14.4755	12.8837
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001093IMP_DH_GMPRt
IPR013785Aldolase_TIM
IPR015875IMP_DH/GMP_Rdtase_CS
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00058766 vs. Swiss-Prot (Human)
Match: IMDH2 (Inosine-5'-monophosphate dehydrogenase 2 OS=Homo sapiens GN=IMPDH2 PE=1 SV=2)

HSP 1 Score: 360.533 bits (924), Expect = 4.682e-122
Identity = 179/233 (76.82%), Postives = 197/233 (84.55%), Query Frame = -1 
Query:    1 GAAISTHDEDVPRLAALVEAGVDVVVLDSSQGNSSFQIERIKEIKAKYPNLEVIAGNVVTAAQAKNLIDAGADGLRVGMGSGSICITQEVCAVGRPQGTAVFYVSEYARRFGVPCIADGGISNAGHIIKALTLGASTVMMGSLLAGTFEAPGEYFYQNGVRLKRYRGMGSLGAM-KSKGSQSRYFVESDKVKVAQGVSGSVEDKGSLFKFIPYLTAGVQHGCQDIGAKSLTSL 696
            GAAI TH++D  RL  L +AGVDVVVLDSSQGNS FQI  IK IK KYPNL+VI GNVVTAAQAKNLIDAG D LRVGMGSGSICITQEV A GRPQ TAV+ VSEYARRFGVP IADGGI N GHI KAL LGASTVMMGSLLA T EAPGEYF+ +G+RLK+YRGMGSL AM K   SQ+RYF E+DK+KVAQGVSG+V+DKGS+ KF+PYL AG+QH CQDIGAKSLT +
Sbjct:  247 GAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKDKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV 479
The following BLAST results are available for this feature:
BLAST of TCONS_00058766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IMDH24.682e-12276.82Inosine-5'-monophosphate dehydrogenase 2 OS=Homo s... [more]
back to top