TCONS_00058751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058751
Unique NameTCONS_00058751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058751 ID=TCONS_00058751|Name=TCONS_00058751|organism=Clytia hemisphaerica|type=transcript|length=734bp
NTAGAAGAGGGGTTCACGTATTATAGAAATCATTAAAGAAATATTCCTGG
AGTTAGACTATAAGTCATGAAAGGAGTATGGATGGATTCTTTAATACAAA
TCCCAAGGCGgaatataaaaccaaaattgttATCGGAAGTAAAAAATCTA
TTAAACGAATTTCTCAATTTCTCaatgttaaaaataaatttctaaaaata
aatatattgtaTGTTTTTCTTGCGCTTTGTTATATACTCATTAATAATGG
TAACCTTTTGATTAAAATTGTCTTTTCAGACAAACACCAACATCTTTCTA
ATCAACCAACCAAACAATGATCACCGAAACAACATTATCATCAGTGAATT
CATAACTTttcgttttaaaaacaaacacaTTATACATACAGGAAACAAAC
CAGACAACGATCTATTAATTATTATTCTGATTAACGACCAAaaagttatg
acgtcacatgcTAATTCAAGGGatattaacattaacattaccCAGACAAT
ACACGTTTAACCTTCAACAGAAATTTCGTTACAATGATTCGTTTTATTGA
CTTCATTCTTTTGTTCCTCTTCATCACTGTTAGCTTTCCATAGTCCGTAT
GTTTTGCCGACAGTTGTTTGCCATAACCGTAATGTTCCATCTTCTGATCC
AGAGGCGTACACTTCACCATCTGGTGAAAATCGAACGCAATGGACAGGTC
CAAAATGAGCATGTGAAGCTTCtacaaaagagaa
Run BLAST on NCBI

transcript from alignment at scaffold_313:383670..384463-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058751 ID=TCONS_00058751|Name=TCONS_00058751|organism=Clytia hemisphaerica|type=transcript|length=794bp|location=Sequence derived from alignment at scaffold_313:383670..384463- (Clytia hemisphaerica)
NTAGAAGAGGGGTTCACGTATTATAGAAATCATTAAAGAAATATTCCTGG
AGTTAGACTATAAGTCATGAAAGGAGTATGGATGGATTCTTTAATACAAA
TCCCAAGGCGGAATATAAAACCAAAATTGTTATCGGAAGTAAAAAATCTA
TTAAACGAATTTCTCAATTTCTCAATGTTAAAAATAAATTTCTAAAAATA
AATATATTGTATGTTTTTCTTGCGCTTTGTTATATACTCATTAATAATGG
TAACCTTTTGATTAAAATTGTCTTTTCAGACAAACACCAACATCTTTCTA
ATCAACCAACCAAACAATGATCACCGAAACAACATTATCATCAGTGAATT
CATAACTTTTCGTTTTAAAAACAAACANGATCACCGAAACAACATTATCA
TCAGTGAATTCATAACTTTTCGTTTTAAAAACAAACACATTATACATACA
GGAAACAAACCAGACAACGATCTATTAATTATTATTCTGATTAACGACCA
AAAAGTTATGACGTCACATGCTAATTCAAGGGATATTAACATTAACATTA
CCCAGACAATACACGTTTAACCTTCAACAGAAATTTCGTTACAATGATTC
GTTTTATTGACTTCATTCTTTTGTTCCTCTTCATCACTGTTAGCTTTCCA
TAGTCCGTATGTTTTGCCGACAGTTGTTTGCCATAACCGTAATGTTCCAT
CTTCTGATCCAGAGGCGTACACTTCACCATCTGGTGAAAATCGAACGCAA
TGGACAGGTCCAAAATGAGCATGTGAAGCTTCTACAAAAGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037007XLOC_037007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058751-exon-scaffold_313-1575043694:384088..384463TCONS_00058751-exon-scaffold_313-1575043694:384088..384463Clytia hemisphaericaexon
TCONS_00058751-exon-scaffold_313-1575043694:383670..384027TCONS_00058751-exon-scaffold_313-1575043694:383670..384027Clytia hemisphaericaexon
TCONS_00058751-exon-scaffold_313-1510915933:384088..384463TCONS_00058751-exon-scaffold_313-1510915933:384088..384463Clytia hemisphaericaexon
TCONS_00058751-exon-scaffold_313-1510915933:383670..384027TCONS_00058751-exon-scaffold_313-1510915933:383670..384027Clytia hemisphaericaexon
TCONS_00058751-exon-scaffold_313-1491911889:384088..384463TCONS_00058751-exon-scaffold_313-1491911889:384088..384463Clytia hemisphaericaexon
TCONS_00058751-exon-scaffold_313-1491911889:383670..384027TCONS_00058751-exon-scaffold_313-1491911889:383670..384027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:383670..384463 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.0923	40.9219	9.65115	6.74377	0	0	0	0	0	0	0	0	0	0	7.07101e-10	0	0	0	0	0	18.6216	20.5236	27.8477	35.6741	0.853222	0.426954	23.4069	15.2205	23.4	20.6437
Blast
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BLAST of TCONS_00058751 vs. Swiss-Prot (Human)
Match: STRAP (Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.554e-22
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = -1 
Query:  564 VEASHAHFGPVHCVRFSPDGEVYASGSEDGTLRLWQTTVGKTYGLWKANSDEEE 725
            +E+   HFGP+HCVRFSPDGE+YASGSEDGTLRLWQT VGKTYGLWK    EE+
Sbjct:  258 LESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEED 311
The following BLAST results are available for this feature:
BLAST of TCONS_00058751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STRAP3.554e-2275.93Serine-threonine kinase receptor-associated protei... [more]
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