TCONS_00058749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058749
Unique NameTCONS_00058749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058749 ID=TCONS_00058749|Name=TCONS_00058749|organism=Clytia hemisphaerica|type=transcript|length=962bp
TCTCAATATTTACTCTAGATTGAGGGTCAGCACCAAATGGGCAGGGGTAT
ATAATCTACACCCCGGAGGTCCCATCTCCTCAAGTCGCTTCTTTGAGTTA
AAGTACTGAATAAATAATATGTTACGAATACGAAAGCCTTCAACTTTCCC
CCAAATTTCTTAGGGGTCCAGGGTTCTATGGCGAGTGAAGTGAAAGGAGT
GTCAGATTTGAAGAAGTGAACTTCAGAACAAAGTAGAGTATGTAAAAAAT
GTAAGTCTTTGTAAAATGATCTTcaaatgttgaatttttttacaaacagG
TGCAGGTACAATTAAAATTTCTTATCTCTTGATGATCAAAACAATTCGAT
CTGTAACTAAATACCATCTTCTTTGGTTTCCTATATAAAACACAAAGTAA
AAATAAAGAATGTCTTTTTCATGCTTAGAAATGTTGTTTCAGTACTGCAC
CCAATGTTGGCGCTGTCAAAAGATGTTATAAGATACAGCTGGTAGGAGAG
CAGTGAAGTTTTGCGACTGAACAGAAAACCCACACACATTCTCTCAAAAG
ATTCTCGCTTTTAGTTAACGTTCAAAAATATGTTTCTCTGTTCCATGATG
TTCTGGTAAATAACGTCATCATGCTTTTGTCGTTAGCTCTTGAAAAAAGA
AACTATTTCCCCATTTTGAGTTTTTTTAACGAACAAAACCTTCTCATCTT
TCTACATCACGTAAGCGAGCGGGCGGTCAGCTAATGTTGCTGCTGGGCGG
CCGCTTGTTGTTGAAGTGCTTGCACGGTGGGTTTTTCTTCTAAGCGTTCG
TACTCTACGTGGAATTCCTTGGCGACTTTTCGCCAGCCTTGAGGGTCGAA
GTAATAATATGTCCCACGTTCATAAGTACTCATCTTTACTTGAGGGTCCA
TTCCAGGGAAACGCGTAATCCATACACGTTCGTCTTTATGATAGCGCCAA
TCTCGTGCATAT
Run BLAST on NCBI

transcript from alignment at scaffold_313:359179..360198-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058749 ID=TCONS_00058749|Name=TCONS_00058749|organism=Clytia hemisphaerica|type=transcript|length=1020bp|location=Sequence derived from alignment at scaffold_313:359179..360198- (Clytia hemisphaerica)
TCTCAATATTTACTCTAGATTGAGGGTCAGCACCAAATGGGCAGGGGTAT
ATAATCTACACCCCGGAGGTCCCATCTCCTCAAGTCGCTTCTTTGAGTTA
AAGTACTGAATAAATAATATGTTACGAATACGAAAGCCTTCAACTTTCCC
CCAAATTTCTTAGGGGTCCAGGGTTCTATGGCGAGTGAAGTGAAAGGAGT
GTCAGATTTGAAGAAGTGAACTTCAGAACAAAGTAGAGTATGTAAAAAAT
GTAAGTCTTTGTAAAATGATCTTCAAATGTTGAATTTTTTTACAAACAGG
TGCAGGTACAATTAAAATTTCTTATCTCTTGATGATNTTGAATTTTTTTA
CAAACAGGTGCAGGTACAATTAAAATTTCTTATCTCTTGATGATCAAAAC
AATTCGATCTGTAACTAAATACCATCTTCTTTGGTTTCCTATATAAAACA
CAAAGTAAAAATAAAGAATGTCTTTTTCATGCTTAGAAATGTTGTTTCAG
TACTGCACCCAATGTTGGCGCTGTCAAAAGATGTTATAAGATACAGCTGG
TAGGAGAGCAGTGAAGTTTTGCGACTGAACAGAAAACCCACACACATTCT
CTCAAAAGATTCTCGCTTTTAGTTAACGTTCAAAAATATGTTTCTCTGTT
CCATGATGTTCTGGTAAATAACGTCATCATGCTTTTGTCGTTAGCTCTTG
AAAAAAGAAACTATTTCCCCATTTTGAGTTTTTTTAACGAACAAAACCTT
CTCATCTTTCTACATCACGTAAGCGAGCGGGCGGTCAGCTAATGTTGCTG
CTGGGCGGCCGCTTGTTGTTGAAGTGCTTGCACGGTGGGTTTTTCTTCTA
AGCGTTCGTACTCTACGTGGAATTCCTTGGCGACTTTTCGCCAGCCTTGA
GGGTCGAAGTAATAATATGTCCCACGTTCATAAGTACTCATCTTTACTTG
AGGGTCCATTCCAGGGAAACGCGTAATCCATACACGTTCGTCTTTATGAT
AGCGCCAATCTCGTGCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037005XLOC_037005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058749-exon-scaffold_313-1575043694:359894..360198TCONS_00058749-exon-scaffold_313-1575043694:359894..360198Clytia hemisphaericaexon
TCONS_00058749-exon-scaffold_313-1575043694:359179..359835TCONS_00058749-exon-scaffold_313-1575043694:359179..359835Clytia hemisphaericaexon
TCONS_00058749-exon-scaffold_313-1510915933:359894..360198TCONS_00058749-exon-scaffold_313-1510915933:359894..360198Clytia hemisphaericaexon
TCONS_00058749-exon-scaffold_313-1510915933:359179..359835TCONS_00058749-exon-scaffold_313-1510915933:359179..359835Clytia hemisphaericaexon
TCONS_00058749-exon-scaffold_313-1491911889:359894..360198TCONS_00058749-exon-scaffold_313-1491911889:359894..360198Clytia hemisphaericaexon
TCONS_00058749-exon-scaffold_313-1491911889:359179..359835TCONS_00058749-exon-scaffold_313-1491911889:359179..359835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:359179..360198 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.275812	0	0.177074	0	0	0	0	0	0.250329	0.118903	0.349064	0	0.767954	0	0	0.214606	0	0	0.236366	0	0	0.721325	0.370402	0.5016	0
Blast
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BLAST of TCONS_00058749 vs. Swiss-Prot (Human)
Match: CNOT2 (CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.830e-25
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = -2 
Query:  779 YARDWRYHKDERVWITRFPGMDPQVKMSTYERGTYYYFDPQGWRKVAKEFHVEYERLEEKP 961
            + RDWRYHK+ERVWITR PGM+P +K +TYERGTYY+FD   WRKVAKEFH+EY++LEE+P
Sbjct:  465 FNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERP 525
The following BLAST results are available for this feature:
BLAST of TCONS_00058749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT25.830e-2572.13CCR4-NOT transcription complex subunit 2 OS=Homo s... [more]
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