TCONS_00058733 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058733
Unique Name	TCONS_00058733
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	816

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_313:634460..637051+
coding sequence from alignment at scaffold_313:634460..637051+

transcript sequence

>TCONS_00058733 ID=TCONS_00058733|Name=TCONS_00058733|organism=Clytia hemisphaerica|type=transcript|length=816bp
NCGGTGGCGGTGGAGGTGGGTCAGTATTTGGTCAATCAAATCAATCGGGG
ACAACAGTTAAATTTCAGCCTGTTGTGAGCACCGAACAAACACAAAAATC
TGGAATTTCAATGCAAGTCAAAACTCACACTCAATGTATAACAGTTATGG
ATGCTTATAAGGATAAATCTATAGAgGAATTACGATTTGAAGATTATTCA
GCTAATAGAAAAGGATCCAGTGGAACTACTGGAGGGTTTGGTAGCACAGC
TGGTGGAACCGGGCTTTTCGGTAACACCTCGTCATCTGGTGGGACCTCTT
TGTTTGGAACAAATAATACTGCTGCATCTAAACCAAGTGGATTTGGAGGT
TTTGGAAGTACAAGTACCTCTGGGGGTCTGTTTGGTGGGAATACTGGCAC
CAGTCTCTTTGGGGCTAAAACTACTAGTTCTTTNTGGAGGTTTTGGTGCA
ACATCCTCTTCAGGTGGATTATTCGGTGGTACTTCTTCAGGTGGTCTGTT
TGGTGGAAAATCTCTGGGTACAACGGGGACAACTGGAACCTCATTGTTTG
GAAGTGCAGGTGGAGGTCTATCTCTTGGTGGAAACACAGGGACTAACAAT
CTCCTTGGAGGTGTAGATCAAGGAACTCTGGCTGCATTGAAACAACAACA
AATGATTCAACAACAATTNAGCTTTGGTACATCTACTGGTGGTAGTTTGT
TTGGAAACACTGCTGCTCCATCATCTTCTGGTTTTGGACTTGGTTCAACT
ACAACAACACAGCCATCACTTTTTGGCGGTGGAACAAGTGGCTTTGGAGC
AACAACCTCATCATNG

Run BLAST on NCBI

protein sequence of TCONS_00058733-protein

>TCONS_00058733-protein ID=TCONS_00058733-protein|Name=TCONS_00058733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
GGGGGGSVFGQSNQSGTTVKFQPVVSTEQTQKSGISMQVKTHTQCITVMD
AYKDKSIEELRFEDYSANRKGSSGTTGGFGSTAGGTGLFGNTSSSGGTSL
FGTNNTAASKPSGFGGFGSTSTSGGLFGGNTGTSLFGAKTTSSXWRFWCN
ILFRWIIRWYFFRWSVWWKISGYNGDNWNLIVWKCRWRSISWWKHRD

Run BLAST on NCBI

transcript from alignment at scaffold_313:634460..637051+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058733 ID=TCONS_00058733|Name=TCONS_00058733|organism=Clytia hemisphaerica|type=transcript|length=2592bp|location=Sequence derived from alignment at scaffold_313:634460..637051+ (Clytia hemisphaerica)
NCGGTGGCGGTGGAGGTGGGTCAGGTATAATGGTACTCTGATATTTCTAA
ATCTAGATAAAGTGGATTTTAAATATCCAGATATTTCTTGAGCATTGTAT
GTTGTGCAGAAATATCCAAACAGAAATATAAACAACAACCGGAAGGAACA
CAACAGGATCTCATGATGTGATGGTGTAAGTTTCTCAAAAGACCATTATC
TTCTTACAAAAACTTGATTGAATGAATTCATTGTAATCTGACTCTTGTTC
AATTTTTAGTATTTGGTCAATCAAATCAATCGGGGACAACAGTTAAATTT
CAGGTATGTAactttatttgatttttctattATACAGCTTATCCTTTTCC
TTGTAATTATGTTTTCAGGTGGCCAAAAGCTGATATAAAGAATACGAAGA
GTGGTACTTTTTCATTAACATTGCTCTTTTGATTCATTTAGCCTGTTGTG
AGCACCGAACAAACACAAAAATCTGGAATTTCAATGCAAGTCAAAACTCA
CACTCAATGTATAACAGTTATGGATGCTTATAAGGATAAATCTATAGAgg
taaagtttttttctaatcaattaatttaaatttagtCTGAGGCATCGTGA
AGTTTGCTCTTTCCAAAGCTGATTATCTGAAGGTAGGAGGGGAAACCACC
CTCTTTCTCCTGATTGCTATGCTTATCATCATACTTATCCTTTTCTCTAA
TTTCTGAGTACTTAGTAGATTGAACCAATACCTTCATGGCACATCATAGG
GCACTCTTTTGGTTTTGTTTCTTTACACTATGGTTGCTCACTGTGTAATT
TTTATAGAATAATGATCAATAATATAATGTGTCATCACTAGCAATTtaaa
tataaatgaaatataACATTCTTTGAGTAGAACAAACAATACGAAACCTT
CTACAGGTTGTTCCCACATTTAGAAAAGCTATAATAACACCAGAGAACCT
TTATCTACTAGCTCAGGAGGCTTGAAAAACGTTCCTAAATGTTCTTTAAA
CATCCCCGTTTAGCGTTGTTACGAGGTAAAGTAAATAACCTTTGGACACA
GTTGGACACAAGGATTGTTTGTGAGGAATGTTCCAGGAATGCTATGTAAA
CACATGTGACACAActgtttcattttcatttgtacTTTAAATCACTTGTG
ATAACACATACATATATTATTAGTTCTGAATTGCCCATTCATTGATTTCT
GACGTTACCTGATTCAAACTATCCTAATTTATATTTTCAGGAATTACGAT
TTGAAGATTATTCAGCTAATAGAAAAGGATCCAGTGGAACTACTGGAGGG
TTTGGTAGCACAGCTGGTGGAACCGGGCTTTTCGGTAACACCTCGTCATC
TGGTGGGACCTCTTTGTTTGGAACAAATAATACTGCTGCATCTAAACCAA
GTGGATTTGGAGGTGAGATTTCCTGTTGCGTTTTTACAACACctttaaaa
agagaaaagtaaTTTAGAGAATTTATTGAATGGATTGATATGTTTGTATG
GCTGTCTCTATATATAAAATTATAACGAAAAACAACCATATAAACCTCTC
AATTCATTTATGTTATTGCGTTCTTATTATTATAATGAACCTTCAAACGA
ACAATTTCAGGTTTTGGAAGTACAAGTACCTCTGGGGGTCTGTTTGGTGG
GAATACTGGCACCAGTCTCTTTGGGGCTAAAACTACTAGTTCTTTNTGGA
GGTTTTGGTGCAACATCCTCTTCAGGTGGATTATTCGGTGGTACTTCTTC
AGGTGGTCTGTTTGGTGGAAAATCTCTGGGTACAACGGGGACAACTGGAA
CCTCATTGTTTGGAAGTGCAGGTGGAGGTGAGATTATCATTTATTATTAC
ACAAGTGGATATTAATTTTCAACCTGTACAGAACACTTGTCCTGAGAAGG
CTTTTCTTCTATATTGTCTTGCATGAAAGGATCAGGGTGTTGACCTTCAC
ACAATGTTTGACTTAAATAATGATGCAGGTATCCATACAATACAAGGTGA
tttcttgattattttttcTCAATCAATACCTGTTTTTGTTTTAGGTCTAT
CTCTTGGTGGAAACACAGGGACTAACAATCTCCTTGGAGGTGTAGATCAA
GGAACTCTGGCTGCATTGAAACAACAACAAATGATTCAACAACAATTNAG
CTTTGGTACATCTACTGGTGGTAGTTTGTTTGGAAACACTGCTGCTCCAT
CATCTTCTGtatgtattttgacatttttttattataatatacTATGCTAT
ATGTTTCAAACTACCACCTTATGGTGCAGCGAAATTAATACAGCTATTCT
GACATCATCGATCTCAGAAATTATTTGgtgaaattctttttgaaagtCAT
CCGACCGCAAAAAAACTTGCTTGGAGtttaaggaattttttttttagtca
ATATTCATTATATTTCTTTTTGTACTTCTTTTCACTGACCTGCACTGACA
TCAATATTTGGGTATTTAACCATAGATGTTTATCATAAATGCATGTTGTT
TTCAGGGTTTTGGACTTGGTTCAACTACAACAACACAGCCATCACTTTTT
GGCGGTGGAACAAGTGGCTTTGGAGCAACAACCTCATCATNG

Coding sequence (CDS) from alignment at scaffold_313:634460..637051+

>TCONS_00058733 ID=TCONS_00058733|Name=TCONS_00058733|organism=Clytia hemisphaerica|type=CDS|length=3564bp|location=Sequence derived from alignment at scaffold_313:634460..637051+ (Clytia hemisphaerica)
GGTGGCGGTGGAGGTGGGTCAGTATTTGGTCAATCAAATCAATCGGGGAC
AACAGTTAAATTTCAGCCTGTTGTGAGCACCGAACAAACACAAAAATCTG
GAATTTCAATGCAAGTCAAAACTCACACTCAATGTATAACAGTTATGGAT
GCTTATAAGGATAAATCTATAGAgGAATTACGATTTGAAGATTATTCAGC
TAATAGAAAAGGATCCAGTGGAACTACTGGAGGGTTTGGTAGCACAGCTG
GTGGAACCGGGCTTTTCGGTAACACCTCGTCATCTGGTGGGACCTCTTTG
TTTGGAACAAATAATACTGCTGCATCTAAACCAAGTGGATTTGGAGGTTT
TGGAAGTACAAGTACCTCTGGGGGTCTGTTTGGTGGGAATACTGGCACCA
GTCTCTTTGGGGCTAAAACTACTAGTTCTTTNTGGAGGTTTTGGTGCAAC
ATCCTCTTCAGGTGGATTATTCGGTGGTACTTCTTCAGGTGGTCTGTTTG
GTGGAAAATCTCTGGGTACAACGGGGACAACTGGAACCTCATTGTTTGGA
AGTGCAGGTGGAGGTCTATCTCTTGGTGGAAACACAGGGACTAAGGTGGC
GGTGGAGGTGGGTCAGTATTTGGTCAATCAAATCAATCGGGGACAACAGT
TAAATTTCAGCCTGTTGTGAGCACCGAACAAACACAAAAATCTGGAATTT
CAATGCAAGTCAAAACTCACACTCAATGTATAACAGTTATGGATGCTTAT
AAGGATAAATCTATAGAgGAATTACGATTTGAAGATTATTCAGCTAATAG
AAAAGGATCCAGTGGAACTACTGGAGGGTTTGGTAGCACAGCTGGTGGAA
CCGGGCTTTTCGGTAACACCTCGTCATCTGGTGGGACCTCTTTGTTTGGA
ACAAATAATACTGCTGCATCTAAACCAAGTGGATTTGGAGGTTTTGGAAG
TACAAGTACCTCTGGGGGTCTGTTTGGTGGGAATACTGGCACCAGTCTCT
TTGGGGCTAAAACTACTAGTTCTTTNTGGAGGTTTTGGTGCAACATCCTC
TTCAGGTGGATTATTCGGTGGTACTTCTTCAGGTGGTCTGTTTGGTGGAA
AATCTCTGGGTACAACGGGGACAACTGGAACCTCATTGTTTGGAAGTGCA
GGTGGAGGTCTATCTCTTGGTGGAAACACAGGGACTAAGGTGGCGGTGGA
GGTGGGTCAGTATTTGGTCAATCAAATCAATCGGGGACAACAGTTAAATT
TCAGCCTGTTGTGAGCACCGAACAAACACAAAAATCTGGAATTTCAATGC
AAGTCAAAACTCACACTCAATGTATAACAGTTATGGATGCTTATAAGGAT
AAATCTATAGAgGAATTACGATTTGAAGATTATTCAGCTAATAGAAAAGG
ATCCAGTGGAACTACTGGAGGGTTTGGTAGCACAGCTGGTGGAACCGGGC
TTTTCGGTAACACCTCGTCATCTGGTGGGACCTCTTTGTTTGGAACAAAT
AATACTGCTGCATCTAAACCAAGTGGATTTGGAGGTTTTGGAAGTACAAG
TACCTCTGGGGGTCTGTTTGGTGGGAATACTGGCACCAGTCTCTTTGGGG
CTAAAACTACTAGTTCTTTNTGGAGGTTTTGGTGCAACATCCTCTTCAGG
TGGATTATTCGGTGGTACTTCTTCAGGTGGTCTGTTTGGTGGAAAATCTC
TGGGTACAACGGGGACAACTGGAACCTCATTGTTTGGAAGTGCAGGTGGA
GGTCTATCTCTTGGTGGAAACACAGGGACTAAGGTGGCGGTGGAGGTGGG
TCAGTATTTGGTCAATCAAATCAATCGGGGACAACAGTTAAATTTCAGCC
TGTTGTGAGCACCGAACAAACACAAAAATCTGGAATTTCAATGCAAGTCA
AAACTCACACTCAATGTATAACAGTTATGGATGCTTATAAGGATAAATCT
ATAGAgGAATTACGATTTGAAGATTATTCAGCTAATAGAAAAGGATCCAG
TGGAACTACTGGAGGGTTTGGTAGCACAGCTGGTGGAACCGGGCTTTTCG
GTAACACCTCGTCATCTGGTGGGACCTCTTTGTTTGGAACAAATAATACT
GCTGCATCTAAACCAAGTGGATTTGGAGGTTTTGGAAGTACAAGTACCTC
TGGGGGTCTGTTTGGTGGGAATACTGGCACCAGTCTCTTTGGGGCTAAAA
CTACTAGTTCTTTNTGGAGGTTTTGGTGCAACATCCTCTTCAGGTGGATT
ATTCGGTGGTACTTCTTCAGGTGGTCTGTTTGGTGGAAAATCTCTGGGTA
CAACGGGGACAACTGGAACCTCATTGTTTGGAAGTGCAGGTGGAGGTCTA
TCTCTTGGTGGAAACACAGGGACTAAGGTGGCGGTGGAGGTGGGTCAGTA
TTTGGTCAATCAAATCAATCGGGGACAACAGTTAAATTTCAGCCTGTTGT
GAGCACCGAACAAACACAAAAATCTGGAATTTCAATGCAAGTCAAAACTC
ACACTCAATGTATAACAGTTATGGATGCTTATAAGGATAAATCTATAGAg
GAATTACGATTTGAAGATTATTCAGCTAATAGAAAAGGATCCAGTGGAAC
TACTGGAGGGTTTGGTAGCACAGCTGGTGGAACCGGGCTTTTCGGTAACA
CCTCGTCATCTGGTGGGACCTCTTTGTTTGGAACAAATAATACTGCTGCA
TCTAAACCAAGTGGATTTGGAGGTTTTGGAAGTACAAGTACCTCTGGGGG
TCTGTTTGGTGGGAATACTGGCACCAGTCTCTTTGGGGCTAAAACTACTA
GTTCTTTNTGGAGGTTTTGGTGCAACATCCTCTTCAGGTGGATTATTCGG
TGGTACTTCTTCAGGTGGTCTGTTTGGTGGAAAATCTCTGGGTACAACGG
GGACAACTGGAACCTCATTGTTTGGAAGTGCAGGTGGAGGTCTATCTCTT
GGTGGAAACACAGGGACTAAGGTGGCGGTGGAGGTGGGTCAGTATTTGGT
CAATCAAATCAATCGGGGACAACAGTTAAATTTCAGCCTGTTGTGAGCAC
CGAACAAACACAAAAATCTGGAATTTCAATGCAAGTCAAAACTCACACTC
AATGTATAACAGTTATGGATGCTTATAAGGATAAATCTATAGAgGAATTA
CGATTTGAAGATTATTCAGCTAATAGAAAAGGATCCAGTGGAACTACTGG
AGGGTTTGGTAGCACAGCTGGTGGAACCGGGCTTTTCGGTAACACCTCGT
CATCTGGTGGGACCTCTTTGTTTGGAACAAATAATACTGCTGCATCTAAA
CCAAGTGGATTTGGAGGTTTTGGAAGTACAAGTACCTCTGGGGGTCTGTT
TGGTGGGAATACTGGCACCAGTCTCTTTGGGGCTAAAACTACTAGTTCTT
TNTGGAGGTTTTGGTGCAACATCCTCTTCAGGTGGATTATTCGGTGGTAC
TTCTTCAGGTGGTCTGTTTGGTGGAAAATCTCTGGGTACAACGGGGACAA
CTGGAACCTCATTGTTTGGAAGTGCAGGTGGAGGTCTATCTCTTGGTGGA
AACACAGGGACTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036996	XLOC_036996	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058733-protein	TCONS_00058733-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_313	supercontig	scaffold_313:634460..637051 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.6394	23.9952	72.8614	78.5348	77.0859	58.9212	37.4216	43.8272	19.2578	27.1483	20.2516	16.5435	20.4854	23.3735	19.6476	26.2849	30.9329	27.3879	7.70427	11.8329	20.6829	21.9133	17.4239	23.944	55.1596	50.2927	9.13634	5.30293	20.7592	18.3082

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058733 vs. Swiss-Prot (Human)

BLAST of TCONS_00058733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058733 (transcript) - C. hemisphaerica