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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058725 ID=TCONS_00058725|Name=TCONS_00058725|organism=Clytia hemisphaerica|type=transcript|length=2861bpRun BLAST on NCBI protein sequence of TCONS_00058725-protein >TCONS_00058725-protein ID=TCONS_00058725-protein|Name=TCONS_00058725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp MSTPNSPWRKWSAEEINQQGQPPRYNGEEEENLVFSFSPSSSHRFLTPHGRun BLAST on NCBI transcript from alignment at scaffold_313:524074..539907+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058725 ID=TCONS_00058725|Name=TCONS_00058725|organism=Clytia hemisphaerica|type=transcript|length=15834bp|location=Sequence derived from alignment at scaffold_313:524074..539907+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_313:524074..539907+ >TCONS_00058725 ID=TCONS_00058725|Name=TCONS_00058725|organism=Clytia hemisphaerica|type=CDS|length=21852bp|location=Sequence derived from alignment at scaffold_313:524074..539907+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058725 vs. Swiss-Prot (Human)
Match: IMDH1 (Inosine-5'-monophosphate dehydrogenase 1 OS=Homo sapiens GN=IMPDH1 PE=1 SV=2) HSP 1 Score: 727.243 bits (1876), Expect = 0.000e+0 Identity = 361/534 (67.60%), Postives = 421/534 (78.84%), Query Frame = 2
Query: 806 MADLISS--TSYVPSDGMKVEDLMKSGTGITYNDFIILPGYIDFGTGDVALNSPLTKKITLKTPFISSPMDTVTESDMAKTMALLGGIGIIHHNCSIEFQANEVHKVKRFEQGFITDPIVISPSHTVTDVKNIHKKFGFSGFPVTENGKVGGKLVGIVTNRDVDFISPEDHEKPASEIMTMKEELTVGRDGITLKEANEILSKSKKGKLPIVDDDFNLVALISRTDLQKNREYPLASKDSKKQLLVGAAISTHDEDVPRLAALVEAGVDVVVLDSSQGNSSFQIERIKEIKAKYPNLEVIAGNVVTAAQAKNLIDAGADGLRVGMGSGSICITQEVCAVGRPQGTAVFYVSEYARRFGVPCIADGGISNAGHIIKALTLGASTVMMGSLLAGTFEAPGEYFYQNGVRLKRYRGMGSLGAM-KSKGSQSRYFVESDKVKVAQGVSGSVEDKGSLFKFIPYLTAGVQHGCQDIGAKSLIPYLTAGVQHGCQDIGAKSLTSLRSMTYSGQLRVEKRTPSAQREGGVHGLHSYEKQLF 2398
MAD + S T YVP DG+ + L S G+TYNDF+ILPG+IDF +V L S LT+KITLKTP ISSPMDTVTE+DMA MAL+GGIG IHHNC+ EFQANEV KVK+FEQGFITDP+V+SPSHTV DV + GFSG P+TE G +G KLVGIVT+RD+DF++ +DH SE+MT + EL V G+TLKEANEIL +SKKGKLPIV+D LVA+I+RTDL+KNR+YPLASKDS+KQLL GAA+ T ++D RL L +AGVDV+VLDSSQGNS +QI + IK KYP+L+VI GNVVTAAQAKNLIDAG DGLRVGMG GSICITQEV A GRPQGTAV+ V+EYARRFGVP IADGGI GH++KAL LGASTVMMGSLLA T EAPGEYF+ +GVRLK+YRGMGSL AM KS SQ RYF E DKVK+AQGVSGS++DKGS+ KF+PYL AG+QHGCQ DIGA+SL+ LRSM YSG+L+ EKRT SAQ EGGVHGLHSYEK+L+
Sbjct: 1 MADYLISGGTGYVPEDGLTAQQLFASADGLTYNDFLILPGFIDFIADEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKKFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTREDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQ--------------------DIGARSLSVLRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514 The following BLAST results are available for this feature:
BLAST of TCONS_00058725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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