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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058692 ID=TCONS_00058692|Name=TCONS_00058692|organism=Clytia hemisphaerica|type=transcript|length=1269bp
GGTTCGTTGTCATTGTGAGAGATTCGATATTTTCTGTGTAGCTGCTCAAA
TAGATCCCACAAAATGTATTCAATTGATTCAATtgaaattcgaatttaat
ttAAATCTACACCAAATATCGAGCTAGCTGATTTGACACTCTAAAGCAAT
TTGGGAAATAGAATTGCGTCTTATTTGAGCAGCAAATGTTTGAGATTGAA
ACATGTATCCTACACAAAAAGGGATTATTATGTAAATCGACTTTCGGTCG
TCCCCTATAAATGGTGAGTTCCCTTCAAAATATCTCTTTGATACGAATCA
GTATAGATCTGATATCAGCCATCatgattttgaaacttttgatcgtcaca
ttttgttttgtttacacAATTCATTGCCATGGTTACATGGAAAATCCACC
TGCTAGAAACAGTATGTGGAGATATGGATTCcccaatcctaaaaactatg
gAGATAATGAGCTGTTTTGTGGAGGTGCCATGGTGATGAAAAGAAACGGT
GGGAAATGTGGCGTCTGTGGAGATCCATACCACGCTAAAGTTCAACATCA
CGCGGATGGCGGTCGATATGCCAACGGTATCATCACCAGAACATACAAAC
AAGGACAAGTCATTGATGTCGATATCTACTTAACAACCTCTCATCGGGGT
TATTTTGAATTCCGTATCGGGGAATTCGATAACAAGAAAACTTCAGGAAA
TGCGATCGGCAAATTGAATGGTCACCTCATGGAAGTGGTCTCTGGTCCCG
TCTCTGCTGATGGAACTCGTTTCCAGGTTCTCAAATATGGTCGCCAAAAA
CTaaacatgaaattgaaattgccTGCTGGTTTGAAATGTAAACGATGCGT
TTTACAATGGTGGTACCGAGGTGGAAACACTTGGGGCTGTGATAAAGAAG
GCTGTGGACTGGGTCACGGTGCACAAGAACATTTTGTAAActgtgctgac
gtcagcatccAATGAGATCATGTGTAATTTCTTATAATATCCATGAAATA
AGATCACTTATAATATTTACTTAGAATCCTTAGAAATTACTGTGTTTTCC
CCTTCACAATATAGGGAGACTTAAAAAGTTTATATCTTTCTTAGAAAGTA
TTTTTTAATGTACAATATGGCACAAGTAAGTTTGAATTGAGAATCAAAAG
AAGGAATATAGTGTTTTGAGATCTTTCTTATCGTATATTTTTCGAGGAAA
TTCGAATCTTAGTATTTTTGTATATAGtattattgaaaagaatacTTTAC
AATAAAAATCCTACGTTAG Run BLAST on NCBI protein sequence of TCONS_00058692-protein >TCONS_00058692-protein ID=TCONS_00058692-protein|Name=TCONS_00058692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MVSSLQNISLIRISIDLISAIMILKLLIVTFCFVYTIHCHGYMENPPARN
SMWRYGFPNPKNYGDNELFCGGAMVMKRNGGKCGVCGDPYHAKVQHHADG
GRYANGIITRTYKQGQVIDVDIYLTTSHRGYFEFRIGEFDNKKTSGNAIG
KLNGHLMEVVSGPVSADGTRFQVLKYGRQKLNMKLKLPAGLKCKRCVLQW
WYRGGNTWGCDKEGCGLGHGAQEHFVNCADVSIQ Run BLAST on NCBI transcript from alignment at scaffold_313:123901..126623+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058692 ID=TCONS_00058692|Name=TCONS_00058692|organism=Clytia hemisphaerica|type=transcript|length=2723bp|location=Sequence derived from alignment at scaffold_313:123901..126623+ (Clytia hemisphaerica)
GGTTCGTTGTCATTGTGAGAGATTCGATATTTTCTGTGTAGCTGCTCAAA
TAGATCCCACAAAATGTATTCAATTGATTCAATtgaaattcgaatttaat
ttAAATCTACACCAAATATCGAGCTAGCTGATTTGACACTCTAAAGCAAT
TTGGGAAATAGAATTGCGTCTTATTTGAGCAGCAAATGTTTGAGATTGAA
ACATGTATCCTACACAAAAAGGGATTATTATGTAAATCGACTTTCGGTCG
TCCCCTATAAATGGTGAGTTCCCTTCAAAATATCTCTTTGATACGAATCA
GTATAGATCTGATATCAGCCATCatgattttgaaacttttgatcgtcaca
ttttgttttgtttacacAATTCATTGCCATGGTTACATGGAAAATCCACC
TGCTAGAAACAGTATGTGGAGATATGGATTCcccaatcctaaaaactatg
gAGATAATGAGCTGTTTTGTGGAGGTAATcgtataattttataaaatgGG
TTTGAATATTTGAAAAGAGCCTTTTAATTTGGTGCGTAAGTGGTCCAGAC
CCCCGTCCGAGAGACCAAGGCTAAATACTCATATTAAGTAAATTCCTTCA
CTTAGGGCAACTCATGTCACGTGGCGGGTAATAATTAAAAATACATCTCC
CCCTAGTAGGATCAAGCATATTATACGTTGGAGGTGAACGTAACAGAAGG
AGCTTTCCCAGAAAAAGTCAACGTTTTTCGTTTATCTAAAACAATTATGT
CAgttttttttctgtgtttttctaGGTGCCATGGTGATGAAAAGAAACGG
TGGGAAATGTGGCGTCTGTGGAGATCCATACCACGCTAAAGTTCAACATC
ACGCGTGAGTCTTCATATTATACTCAGCTAACCTGTATCTCTACCATATT
GAATTATGCCAATGAATATCTGTACAGAAATTGTTTATTGAATGGCCCAC
ACACTCCACGTTGTAAATCTTTATAAATTGAGACTTTTAAAGTTAGAGAT
ATTTGAAACAGACACTAAACAGTCTACTATAGCCTTTCTGCCCTTGTGAA
TTTCAAAACCAAATATGGTGTCTTTCAATATTTACCAAGTTTGGATGATT
AATATTTTCATCTAGGGATGGCGGTCGATATGCCAACGGTATCATCACCA
GAACATACAAACAAGGACAAGTCATTGATGTCGATATCTACTTAACAACC
TCTCATCGGGGTTATTTTGAATTCCGTATCGGGGAATTCGATAACAAGAA
AACTTCAGGAAATGCGATCGGCAAATTGAATGGTCACCTCATGGAAGTGG
TGAGTTGTGAAAAAATCTATAGTTTAGATAAATCTTTTATGATGCTTGAT
ACGTATCTTTTAAAGAAGTTCTCCCAATAAAACATTAACCTACCTATATt
ggttttttactttttaaaaatttctagtAATATCTTAGTCTTTTAGAATA
TAAAGATCCAAAGTCGATTTTGTTTCTTCAATCGAAAATTGAGAATACat
gggttgcaaaattatagcagtgcagtcaaaacatgtgattaccacagata
tctgtaaagcccgaagggctagatttgcggcttttatcgaaaagtgaagc
ctaggtttggaaggatttcctaccaaagtcacgtgaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgc
tagatcctatccatcggtacgaaatttaaaaagtcaaatttttgcttcac
ttttttttgctggagaaagcttaaagttgcctatctagcccttcgggctg
aGATATCTGTGGTGATTACTCGacaaagttcacgtgattttattcccatg
ttacttgctttacaactcaAATTTAATTACTTTATTAGTATtgataaatt
cgaaccaatcagaaataaaggtCATTTAagaagcacataaaaatttcgag
tcaAATTGTGTTAAAGTATAGTATATATTTTTCTCCACAAGGTCTCTGGT
CCCGTCTCTGCTGATGGAACTCGTTTCCAGGTTCTCAAATATGGTCGCCA
AAAACTaaacatgaaattgaaattgccTGCTGGTTTGAAATGTAAACGAT
GCGTTTTACAATGGTGGTACCGAGGTGGAAACACTTGGGGCTGTGATAAA
GAAGGCTGTGGACTGGGTCACGGTGCACAAGAACATTTTGTAAActgtgc
tgacgtcagcatccAATGAGATCATGTGTAATTTCTTATAATATCCATGA
AATAAGATCACTTATAATATTTACTTAGAATCCTTAGAAATTACTGTGTT
TTCCCCTTCACAATATAGGGAGACTTAAAAAGTTTATATCTTTCTTAGAA
AGTATTTTTTAATGTACAATATGGCACAAGTAAGTTTGAATTGAGAATCA
AAAGAAGGAATATAGTGTTTTGAGATCTTTCTTATCGTATATTTTTCGAG
GAAATTCGAATCTTAGTATTTTTGTATATAGtattattgaaaagaatacT
TTACAATAAAAATCCTACGTTAG Coding sequence (CDS) from alignment at scaffold_313:123901..126623+ >TCONS_00058692 ID=TCONS_00058692|Name=TCONS_00058692|organism=Clytia hemisphaerica|type=CDS|length=2820bp|location=Sequence derived from alignment at scaffold_313:123901..126623+ (Clytia hemisphaerica)
ATGGTGAGTTCCCTTCAAAATATCTCTTTGATACGAATCAGTATAGATCT
GATATCAGCCATCatgattttgaaacttttgatcgtcacattttgttttg
tttacacAATTCATTGCCATGGTTACATGGAAAATCCACCTGCTAGAAAC
AGTATGTGGAGATATGGATTCcccaatcctaaaaactatggAGATAATGA
GCTGTTTTGTGGAGGTGCCATGGTGATGAAAAGAAACGGTGGGAAATGTG
GCGTCTGTGGAGATCCATACCACGCTAAAGTTCAACATCACGCGGATGGC
GGTCGATATGCCAACGGTATCATCACCAGAACATACAAACAAGGACAAGT
CATTGATGTCGATATCTACTTAACAACCTCTCATCGGGGTTATTTTGAAT
TCCGTATCGGGGAATTCGATAACAAGAAAACTTCAGGAAATGCGATCGGC
AAATTGAATGGTCACCTCATGGAAGTGGTCTCTGGTCCCGTCTCTGCTGA
TGGAACTCGTTTCCAGGTTCTCAAATATGGTCGCCAAAAACTaaacatga
aattgaaattgccTGCTGGTTTGAAATGTAAACGATGCGTTTTACAATGG
TGGTACCGAGGTGGAAACACTTGGGGCTGTGATAAAGAAGGCTGTGGACT
GGGTCACGGTGCACAAGAACATTTTGTAAActgtgctgacgtcagcatcc
AATGAATGGTGAGTTCCCTTCAAAATATCTCTTTGATACGAATCAGTATA
GATCTGATATCAGCCATCatgattttgaaacttttgatcgtcacattttg
ttttgtttacacAATTCATTGCCATGGTTACATGGAAAATCCACCTGCTA
GAAACAGTATGTGGAGATATGGATTCcccaatcctaaaaactatggAGAT
AATGAGCTGTTTTGTGGAGGTGCCATGGTGATGAAAAGAAACGGTGGGAA
ATGTGGCGTCTGTGGAGATCCATACCACGCTAAAGTTCAACATCACGCGG
ATGGCGGTCGATATGCCAACGGTATCATCACCAGAACATACAAACAAGGA
CAAGTCATTGATGTCGATATCTACTTAACAACCTCTCATCGGGGTTATTT
TGAATTCCGTATCGGGGAATTCGATAACAAGAAAACTTCAGGAAATGCGA
TCGGCAAATTGAATGGTCACCTCATGGAAGTGGTCTCTGGTCCCGTCTCT
GCTGATGGAACTCGTTTCCAGGTTCTCAAATATGGTCGCCAAAAACTaaa
catgaaattgaaattgccTGCTGGTTTGAAATGTAAACGATGCGTTTTAC
AATGGTGGTACCGAGGTGGAAACACTTGGGGCTGTGATAAAGAAGGCTGT
GGACTGGGTCACGGTGCACAAGAACATTTTGTAAActgtgctgacgtcag
catccAATGAATGGTGAGTTCCCTTCAAAATATCTCTTTGATACGAATCA
GTATAGATCTGATATCAGCCATCatgattttgaaacttttgatcgtcaca
ttttgttttgtttacacAATTCATTGCCATGGTTACATGGAAAATCCACC
TGCTAGAAACAGTATGTGGAGATATGGATTCcccaatcctaaaaactatg
gAGATAATGAGCTGTTTTGTGGAGGTGCCATGGTGATGAAAAGAAACGGT
GGGAAATGTGGCGTCTGTGGAGATCCATACCACGCTAAAGTTCAACATCA
CGCGGATGGCGGTCGATATGCCAACGGTATCATCACCAGAACATACAAAC
AAGGACAAGTCATTGATGTCGATATCTACTTAACAACCTCTCATCGGGGT
TATTTTGAATTCCGTATCGGGGAATTCGATAACAAGAAAACTTCAGGAAA
TGCGATCGGCAAATTGAATGGTCACCTCATGGAAGTGGTCTCTGGTCCCG
TCTCTGCTGATGGAACTCGTTTCCAGGTTCTCAAATATGGTCGCCAAAAA
CTaaacatgaaattgaaattgccTGCTGGTTTGAAATGTAAACGATGCGT
TTTACAATGGTGGTACCGAGGTGGAAACACTTGGGGCTGTGATAAAGAAG
GCTGTGGACTGGGTCACGGTGCACAAGAACATTTTGTAAActgtgctgac
gtcagcatccAATGAATGGTGAGTTCCCTTCAAAATATCTCTTTGATACG
AATCAGTATAGATCTGATATCAGCCATCatgattttgaaacttttgatcg
tcacattttgttttgtttacacAATTCATTGCCATGGTTACATGGAAAAT
CCACCTGCTAGAAACAGTATGTGGAGATATGGATTCcccaatcctaaaaa
ctatggAGATAATGAGCTGTTTTGTGGAGGTGCCATGGTGATGAAAAGAA
ACGGTGGGAAATGTGGCGTCTGTGGAGATCCATACCACGCTAAAGTTCAA
CATCACGCGGATGGCGGTCGATATGCCAACGGTATCATCACCAGAACATA
CAAACAAGGACAAGTCATTGATGTCGATATCTACTTAACAACCTCTCATC
GGGGTTATTTTGAATTCCGTATCGGGGAATTCGATAACAAGAAAACTTCA
GGAAATGCGATCGGCAAATTGAATGGTCACCTCATGGAAGTGGTCTCTGG
TCCCGTCTCTGCTGATGGAACTCGTTTCCAGGTTCTCAAATATGGTCGCC
AAAAACTaaacatgaaattgaaattgccTGCTGGTTTGAAATGTAAACGA
TGCGTTTTACAATGGTGGTACCGAGGTGGAAACACTTGGGGCTGTGATAA
AGAAGGCTGTGGACTGGGTCACGGTGCACAAGAACATTTTGTAAActgtg
ctgacgtcagcatccAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058692-exon-scaffold_313-1491911889:123901..124374 | TCONS_00058692-exon-scaffold_313-1491911889:123901..124374 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1510915933:123901..124374 | TCONS_00058692-exon-scaffold_313-1510915933:123901..124374 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1575043694:123901..124374 | TCONS_00058692-exon-scaffold_313-1575043694:123901..124374 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1491911889:124676..124754 | TCONS_00058692-exon-scaffold_313-1491911889:124676..124754 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1510915933:124676..124754 | TCONS_00058692-exon-scaffold_313-1510915933:124676..124754 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1575043694:124676..124754 | TCONS_00058692-exon-scaffold_313-1575043694:124676..124754 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1491911889:125016..125199 | TCONS_00058692-exon-scaffold_313-1491911889:125016..125199 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1510915933:125016..125199 | TCONS_00058692-exon-scaffold_313-1510915933:125016..125199 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1575043694:125016..125199 | TCONS_00058692-exon-scaffold_313-1575043694:125016..125199 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1491911889:126092..126623 | TCONS_00058692-exon-scaffold_313-1491911889:126092..126623 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1510915933:126092..126623 | TCONS_00058692-exon-scaffold_313-1510915933:126092..126623 | Clytia hemisphaerica | exon |
| TCONS_00058692-exon-scaffold_313-1575043694:126092..126623 | TCONS_00058692-exon-scaffold_313-1575043694:126092..126623 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_313 | supercontig | scaffold_313:123901..126623 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004302 | Cellulose/chitin-bd_N |
Blast
The following BLAST results are available for this feature:
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