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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058687 ID=TCONS_00058687|Name=TCONS_00058687|organism=Clytia hemisphaerica|type=transcript|length=604bp
ATTTACACTGCGAAGTGAAAAGACACTGCCTTCACTCTTTTGTTGTAACT
TTCACAGGGGGCCTGGTCACCACAATATCTAATTACATTTTATACCGATC
AGTTAAAAGACAATGCATGGAGATAGCAGCTACTATTGTTGATCGATCTg
gtgaaaaacaaaagaaaagacgAGAACTTATGAAGAAGCGGCAGTTAAGA
TCACTGAAGATTTGTATTTGGATCGCAGCCTCCTATATCTTGACTTGGTT
CTTATTAATCGGTGGCGCGACTGTCCAACAACAAGTCAAATCTATGAGTA
GTAACTATTTGATTTTGTTCGCTTTGGTTGGTTATTCGAATGGTCTATGG
GACGTCATTATATTTTTCCATTGGAATAATACGGCTAAAAGACAGTTCCG
CAAGCTCATTCATGTTTCAAAAGCGGGCNATTATATTTTTCCATTGGAAT
AATACAGCTAAAAGACAGTTCCGCAAGCTCATTCATGTTTCAAAAGCGGG
CGAAATTGACGTCAGTGAAACAGAAGGGTGCAAATCTGCCGTCACCGAAA
ATATGACAACCAATTTAAGACAGTTGTCAACTAAACTCCAAAACTGATGA
TGGA Run BLAST on NCBI protein sequence of TCONS_00058687-protein >TCONS_00058687-protein ID=TCONS_00058687-protein|Name=TCONS_00058687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
LHCEVKRHCLHSFVVTFTGGLVTTISNYILYRSVKRQCMEIAATIVDRSG
EKQKKRRELMKKRQLRSLKICIWIAASYILTWFLLIGGATVQQQVKSMSS
NYLILFALVGYSNGLWDVIIFFHWNNTAKRQFRKLIHVSKAGXYIFPLE Run BLAST on NCBI transcript from alignment at scaffold_313:28743..36436+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058687 ID=TCONS_00058687|Name=TCONS_00058687|organism=Clytia hemisphaerica|type=transcript|length=7694bp|location=Sequence derived from alignment at scaffold_313:28743..36436+ (Clytia hemisphaerica)
ATTTACACTGCGAAGTGAAAAGACACTGCCTTCACTGTaagttttttctt
caatttttacttTACTTTGTCCATTCTCCTATATGTCACCATGTCACTGG
TCACGTCTGATTTAGCTTAGGGTTTTGAAGTCGCGaaattttaaaatgca
tttCTGAGTCTGACAAGGTCAACTATGGTCATTTTTACCACCATTCAAGG
TGGGTTCGATAGTTTCGATTAactcgattggtttgattgatatTTCAACA
TGGATTGAATATAAAATATTCGATATTGATCGAGAAGTGTTCAGAATCGG
TATTACATGAGTCGTTGAATATAAATTGGATGTCTTCGATTCATCTTCGA
TTGATCAAAAGCTAACTGAAAACAATACATTGATTCTACAAAACTGCAGA
TATTGTACAATCGCGGTAAAATTGCTAGAGGAGAcaagttgatttttcaa
ctAGTCCTGACCCCTCTCTGTTTGAGAAGATGTCTATGGGTGGTGGTCCG
GTGGTCTATTTGTCTAAGATTGgagatttggaaaaagtttaaattttgag
tCTTGATTATCGGAACTCAATCAGTCGGTACCGCTACATGAaaaaggcaa
ctattgccttaacgggaaatatttcccgaacggaaaggtgaaaataaccc
gCAAAGGAAACTttcaagattgaaaatttcctcACAATTTTCTGTTTCCC
GTTTTGGTCAAGAAATTTTCATcgttcccgaacgggaaatagaatttgtg
taaacaaagtagttttttgtttcccgatcgaAAAAAAGTTTCCGAATAGG
CagggaagtttttaattgggaatggggaaagtagaattaagaagcAAGTA
CTcggtggatttcttaactaGAACGAatactactctcgggtacttaataa
cCGTCCCCCCcgcgctaattaatttttcgaaaattttccacccaggacat
tcttattccaaccccccccgcttattaatttttggggaaatgtttttgaa
agttcccttttttgtcctaattcagctgtattagcctccttttcaaaaat
tttccacccaggacatttttattccacccccccgctttttaagttttgaa
tttttttccccccccccgctttttaagttttgaatttttttccccccccc
ccccccgcttattaatttttggggaaatgtttttgaaagatccctttttt
gtcctaattcagctgtattagcccccttttcaaaaattttcccccccgga
cattttttttcccccccccccccccgcttattaatttttggggaaatgtt
tttgaaagatcccttttttgtcctaattcagctgtattagcccccttttc
aaaaattttcccccccggacattttttttcccccccccccccccgcttat
taatttttggggaaatgtttttgaaagatcccttttttgtcctaattcag
ctgtattagcccccttttcaaaaattttcccccccggacattttttttcc
cccccccccccccccgcttattccaacccccccggctattaggtacccga
gagtatttatTTTCCCTCCTTTACAAAAGGGACAAGTTTTAAACTTTCCT
CAGGCATTTCCGGAGTGCTCAGAGGCCACTTTCCTGATCGGGAAACTGGT
GAATTTTCCGATTTGGAAAGTCTAGTCATTTCATTTTCCACCTTTCCGTT
CGGAAAATATTTCCAATgaaggcaatagttgccttttTCATGTAGTGGTC
CCAACTGTCAATGAAATGCTGTGGTTAACAAGTTCGAATAACTTAATATT
TGATCACaaagttttataaaaatatccGATCCTGCTTCTGCTCCAAAATA
TTAATAGCTGCTCTGATTTTTATcatattggaaaatttttgatggaAATG
CGATATTTTTGAATGAAGAAGCTGAAAGGACTAGATAATTGAAATAAGCC
CCTCGACAAGAATTATTTACACGGAATAAGAAAGTTTTCGAATTTCCATG
CAGTATGTTTTACTTCAAAAGGAAGTCGAGTCTTGAACTAGTCTAGATTT
GAGTAGAGTCTGGATTTATGTTGCAAAAAAGACTTAATGAATACGTGTGA
TGCCTTGAGTAATTGGAATCTTCTTGGACATTTGGGATAGAAGTAGCTTG
GATATACAGGTGGTAAACTATTTCACTGTCTAGATTTGGATATTTTATGT
TGTTGATTTACCGCCTGGTCTTCCTAAAGCGATGGCATCCTCAAATCAGA
ATGCAGTCTGCTCCCCTGCGCTCACACTTCGCTAAAGCCGACAAAAATAA
GGTAATTCTCCACTTGCTAGTGTAGATGAATAATATCACGGTGTTTCATG
CTGGTGCAATTTTCAGGCAAAGCAGTGTATTGCAGATTTTACTTTGATAC
ACATTCTGGATAAACTTTGATTGCACCAGCATGAAACATCGTAATTGTAA
GTGAGTTATTTCTTGAGATCGCGCTCgaatttttctcgaaatttatgGAG
GAGTACTCTCTAAGCAATCTTCAGGCAATGCAATGTattgtagattttat
tttaattgGTTATAAATTTGGTTGGCTaggaaatcttttgaaaacatGGG
TATGGACTTTCATTCTTTAGGGAGACCAGGCTATAATTTCAGAACTTTGT
ATCCATGTCGAggtaaagttttatttttctgaaaattaagcttggatatc
caggctaggatAAATTATTAATCTGGATAGGTGCCAATATTTTTATAATC
CAATTCAATGATAAAATAACTTCGCACTCAAAGTAAGTCCCAGACCTCTC
TGTGGCACTCGAGTGGAAATCCTTTGAAAATCCAAGTGCATTTCAAAAGT
TCTTAAGAACTGAGAATTTTGAAATACCATGTTTATGTCACACAACTCGA
GCAAAATTGACGAACCTGATCAAAATCAATATACgtctcttttgtttttc
tttctcttttataCCAAGAACAGAAAAGTCTGGTTCTGTCTcccactaca
cgtttttttataagaatgtccggaatttttaaagccttcggttgttttta
actttttgagtcttAAGCCTAtaagtgttcttattttcactgtTTTGTGA
AgaatctttgtacattttttaagaaattcatGTTTTAGAGAACGccaagc
ctcaaaatgttcttaacttgttcttaataatttAGTGTCCCTTTAGCTTT
CTAGCcttcgaagtcttatgttcttgcatagtttgttcttataaaaaaac
gtgtatggtgTTTAGTCAGCATAAATATCTTACTTAATAGACTGTTTGAC
GAAAATCATTCGTAGATTGAATTGTGAATCAGTTGTTCAAATAAACGAAA
CCTACTTAGCAAGGATGTGCTATGGATCTGACAAAATTGTGGAATTTTCT
TTCAAACTATTATTATTATGGTCGTTGACTAGTGATGATGATGgacaaaa
atctgattgaacTTTCAGTTTTAGTCACTTACTGACTGAAGCAATAAGCA
GTAAAGCAAATATGACAATGGTAACACCAGACTAGACTGGACTAGCAAAT
TGTGTTAATGTTTTACGACTACACTATAGTGTTGATTCTTTTGTCTGTCC
ATCATTCTACTGTatttaaaaactttaagaaTCTCTTCTCGAGCTCGAGA
TTGTCATTACTTCCGTTCAAGGGGGTGTCCTTAAAAAGCCAGATTTGGTG
TCACTTGGTGTCGGGGACAAGAGCATAAGAAGAATTTGGTTTTTAGTATT
GTATAAACTAACAGCTTGTTTAGGGAAAATTTGAGCACAAGGataatgtt
tttattaattaattaatgGTTGTAAAATTATCTGCAGTCGCACCTAGTTT
AGATATTTTGTTGTTATGCTACATCTTTTGATAACCAGATGTTATATTTC
CCTTGCCTTTGAACCTGTTCTTTTTACATAGGAATACGACCTTGACCCTT
TTTCAGCCTCCCTTATAGTACCTGCCCTAACATAGGTTTTTTCATAGtct
tttaaaaaggtttatacTTGAATGTTTTAAGCTTTTAAAATCTGCCTCGG
CGAATAAAGAGAATAATTttgctgaaagaaaaattaaagattttttatta
aagaaaattGGTACGAGGCTACCATACTTGCCTTACTCAGCTTATCATGG
CTTTCATTATTAATCTATTTGTAAAAGAAGTACAACCACTATTGCGGATT
TAGCATTACTTTTAGAATATGCAAAACGGAAAAAAGCAACGGAAATGTAT
agtgtgtccggaaaaaagcGGAAGGTACAGAATTTCTATAAAtagaaatc
ttcatttctatATTACGACATAATTGCTCAATTTTGTTCAAAAACCCATT
TTGATTACCTTTGGGAATTAAATATCTAATGATAGAACAAAGTAATTCCA
TTCTAGGGCGCCCCATTCTAATTTCTATGATGTTTAATACCATTGAGATG
GTTGAGATTTTACTCTAAATCTATTCCAATTTTTTCGGACACACGGACAC
ATTattatctatattataatacgcttaaatcggaactctcccattctcgc
atgaggctttttcgctagcgatttttaaatacacggcaatttttttcgcg
ccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCTTGATGGAGAA
ACACAACTGACTGTGCAATAGCACTATCagcataatttatagttttttaa
aaaaaagtttatgtcggttatgaaataattttgattcatatgggaatacg
tcgaagataaaatttgagttttcaaaaagacatcatTTTTATGATTACCC
TTGAGATTAATAAAGCTCCGATGACATTTCCCTTCTATTTGATACtctga
taaaaacatttcaatttaatgGACTTGACAATATGAGAAAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTATACAAAtccctacaagtttctgaaaaatagaaaagcgagcgaag
cgagcgtattaaaaggagtaagaagtcgtctcggacgacgccgggacggc
tagtatAGTTTTATTTCGACTGATTAGATGTGTTGGTTTTTCTATTACTA
AGTGGAATATTTTACACTCGTTTACAGCCTACACCCTAACTTAAGAAGCA
CAAGTTGCTATTGCTAATGATTTTTCTAGAGCTATCTGAACAGGTTGCAA
ATAACAACAGGTTAAACATCGACACTTAAATGATAATTTGTCTTTCAGTT
AATCTGATCTGAAATGCAAAGTTTGTTATTGTGCGTAGGAATTTGAGCTG
CTTCCTTCAATACCGCCAAAAGAATTTATTTGCATGTTTTACATGGTTCT
GTAAATTTTCTAAGAACAAAAAAGAAGGCCGAAAATTTATAAGATGACGT
AAATTTCGATTGAATGTGAATTTATTTAGTTACTTTTAGTGGAAAAGTAa
ccctgtttgtttttttttattaaatttttcctTGTAacatctttcttttg
ttttgtttcctCATTTTTCCTTTAAGGAATCTTTTTCATTTACAGCtgaa
caattttcaattttatttgattttccaTCTTCCGCCCACATTCTTGTATC
CCGTCCTAATAATTCATCAAATTTTCCCCTTTTTAACCATGCATAACTCA
AAAGGTTTGAAATTTGATCAAACCTGGCCTCTATCTGTTAATTAATTCCA
AGCCTGCTTGAAATTGGATGTGCAATAAGCAAAGGCCCCTTATTCACACT
GTTTTATTGTTGGTCAAAGTTTCTTGGTTgtcaataaattattttttttt
ggcaaaattcaaTCAGAGGGAGAACTAGTTAACAATTTTTATAGGGCCTT
TATAACGAAAGAGTATATTGTTAACTGGTCGCTAAAGAACttgtttattg
ttttttatattagatttaaaaatcaataaaacgaTATTGGGAAAAAATTA
TTCGTTCATAGAGTTGTGTTATAGTTTGTTGGTAACCTAGAGTTTGAGCA
AAAGATTCTACTGTCATTCTTTTGCACCATACTTTTCACACCTTTTAAAG
AAGGTTACACCTTGAACCAGAAGAATTGCATTTATTGGTGTTGGCAGTTT
CACCttattcaagtttaaaaaataaCGAAATCATCTTCATATCTATTCAG
CTCAACTCAGAAAATGGTAAGCAGTGCAGAAACAGTGCCAGAGTCATGGG
TTTATTTATGGATCTTGTTTTTCATTGAAGCGTGCATTCTGATTATCGCC
AACATCATTGCTTCGACAGTCATCTTATCTTCAAAGCATTTACGATCGAT
ATTTAACTACATTCTATTATGTTTATTATTTATCACGCACGTTTTCACGG
GCCTCTTCATCGTCATCCGTGTCGCATTATTGCTCTGGATCAAATCGGAC
ACCACCAGTGCTTTAGAATACGTCACGTTGCTACGGGATACAGCAACAAG
CCTCGAAGTACATTTAACCATTTTAATTTCAGTGGAAAGATTTATAGCCA
TACGTAAGCCATTCCTCTACgctaaaatgacaaaaatacaTGCTGCCATA
GGTATTGGTATCGCTTTTGCTTTGACTATTGTTTTTTCAATCAATCGTAT
TTTTTGGTCCGCTTATTTCATTCCAGCTTTTGTTGTAACTTTCACAGGGG
GCCTGGTCACCACAATATCTAATTACATTTTATACCGATCAGTTAAAAGA
CAATGCATGGAGATAGCAGCTACTATTGTTGATCGATCTggtgaaaaaca
aaagaaaagacgAGAACTTATGAAGAAGCGGCAGTTAAGATCACTGAAGA
TTTGTATTTGGATCGCAGCCTCCTATATCTTGACTTGGTTCTTATTAATC
GGTGGCGCGACTGTCCAACAACAAGTCAAATCTATGAGTAGTAACTATTT
GATTTTGTTCGCTTTGGTTGGTTATTCGAATGGTCTATGGGACGTCATTA
TATTTTTCCATTGGAATAATACGGCTAAAAGACAGTTCCGCAAGCTCATT
CATGTTTCAAAAGCGGGCNATTATATTTTTCCATTGGAATAATACAGCTA
AAAGACAGTTCCGCAAGCTCATTCATGTTTCAAAAGCGGGCGAAATTGAC
GTCAGTGAAACAGAAGGGTGCAAATCTGCCGTCACCGAAAATATGACAAC
CAATTTAAGACAGTTGTCAACTAAACTCCAAAACTGATGATGGA Coding sequence (CDS) from alignment at scaffold_313:28743..36436+ >TCONS_00058687 ID=TCONS_00058687|Name=TCONS_00058687|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_313:28743..36436+ (Clytia hemisphaerica)
TTACACTGCGAAGTGAAAAGACACTGCCTTCACTCTTTTGTTGTAACTTT
CACAGGGGGCCTGGTCACCACAATATCTAATTACATTTTATACCGATCAG
TTAAAAGACAATGCATGGAGATAGCAGCTACTATTGTTGATCGATCTggt
gaaaaacaaaagaaaagacgAGAACTTATGAAGAAGCGGCAGTTAAGATC
ACTGAAGATTTGTATTTGGATCGCAGCCTCCTATATCTTGACTTGGTTCT
TATTAATCGGTGGCGCGACTGTCCAACAACAAGTCAAATCTATGAGTAGT
AACTATTTGATTTTGTTCGCTTTGGTTGGTTATTCGAATGGTCTATGGGA
CGTCATTATATTTTTCCATTGGAATAATACGGCTAAAAGACAGTTCCGCA
AGCTCATTCATGTTTCAAAAGCGGGCNATTATATTTTTCCATTGGAATAA
TTACACTGCGAAGTGAAAAGACACTGCCTTCACTCTTTTGTTGTAACTTT
CACAGGGGGCCTGGTCACCACAATATCTAATTACATTTTATACCGATCAG
TTAAAAGACAATGCATGGAGATAGCAGCTACTATTGTTGATCGATCTggt
gaaaaacaaaagaaaagacgAGAACTTATGAAGAAGCGGCAGTTAAGATC
ACTGAAGATTTGTATTTGGATCGCAGCCTCCTATATCTTGACTTGGTTCT
TATTAATCGGTGGCGCGACTGTCCAACAACAAGTCAAATCTATGAGTAGT
AACTATTTGATTTTGTTCGCTTTGGTTGGTTATTCGAATGGTCTATGGGA
CGTCATTATATTTTTCCATTGGAATAATACGGCTAAAAGACAGTTCCGCA
AGCTCATTCATGTTTCAAAAGCGGGCNATTATATTTTTCCATTGGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058687-exon-scaffold_313-1491911889:28743..28778 | TCONS_00058687-exon-scaffold_313-1491911889:28743..28778 | Clytia hemisphaerica | exon |
| TCONS_00058687-exon-scaffold_313-1510915933:28743..28778 | TCONS_00058687-exon-scaffold_313-1510915933:28743..28778 | Clytia hemisphaerica | exon |
| TCONS_00058687-exon-scaffold_313-1575043694:28743..28778 | TCONS_00058687-exon-scaffold_313-1575043694:28743..28778 | Clytia hemisphaerica | exon |
| TCONS_00058687-exon-scaffold_313-1491911889:35869..36436 | TCONS_00058687-exon-scaffold_313-1491911889:35869..36436 | Clytia hemisphaerica | exon |
| TCONS_00058687-exon-scaffold_313-1510915933:35869..36436 | TCONS_00058687-exon-scaffold_313-1510915933:35869..36436 | Clytia hemisphaerica | exon |
| TCONS_00058687-exon-scaffold_313-1575043694:35869..36436 | TCONS_00058687-exon-scaffold_313-1575043694:35869..36436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:28743..36436 + |
Blast
The following BLAST results are available for this feature:
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