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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058636 ID=TCONS_00058636|Name=TCONS_00058636|organism=Clytia hemisphaerica|type=transcript|length=2486bp
attttgaaaaaaaaaattattttcataagtagcaaaatgaaaaacattcg
ataaaatttaattttacataTAGCTTTTACTGATTATATGATCAATGAAA
ATTTCATACTTTTCATATAAACATAGGATATCCCTATTTTGCTAAGATGT
AACATTGCCTAAAATATGTCTACATACCTCTATAGGTAAAGTTAATTAGC
TAATGAGCTAAGATAAATTGTTATCAAGTTATTCATTATGTCTAGATGAT
TATTTGTagatttaagaaaattgaagctCTCATTGATCAATAAAAAGTAA
AAGCAACTacataaactaaaacaaaaaaataataaataagttCGCACAAT
GGTAACCAAAGCGAAATAACTATTAGGAAATGAAACCATGTCAAGAACAA
GTACATATTATAAAGTTAGGATTTGTTTAGATTAACAGGAGTAACTGCGA
GTTACTATGTtgtataatttttcttttattggcTACAATAATATGAAGTG
AACTAAAAAAACGGATAACGAGctatagtttttaggatttatTAACAGAA
TGCTTGTTTTTTGAAGAATGactgaaaaagagaaaattatacaaaaaata
aaCCTAAAATCTTGAGGATGCTTACATGAGAACCTAAGAAAATGATCAAT
GACTTGACATTATTGGCGACAATAACGCTTTTGAatgttaaaatgaaaaa
aatgtagtattataaagaaaaaataataccCCAATACCAGTGCAAGAAGA
CAAAAAAACTTTGCTGTTTGGAATTTTTCTTATCAAAACAATATAGAAGA
GAAAATTATCAATCTAGGTTTTCAACtaaaagttcaaaagttatagaccc
aaaattattgaagttttactattatgaaaatgaaaatgaaattttacgaA
GGACACAGATTTTAAAACATTACTGAattaaatgattcttttaaaataat
ACCTAATTGTCTATATCTAGATctcttttagaaaatataaagatATTGCT
TCGTATGGGCAAACTATGGCCAAAGACCATCAATGGTAAATAGCCCAAAT
AACAATTTTCATTTCCTTCGTAAAGAAATGatgtactctttttttataat
gcgtaaatagtttaaaatttcaaaatattgtatgaagatttttttttaat
ttctttcttctaGAAGGTTTTCCTTGTGATTGCTTTTACCCCTTCATCTT
CATACTCCTTCTTAGATACCCACAtctttttgaaagtgtctaAAGAAGCT
AAAATTGAGCCACCAATCCAAGTTGAGTATAATCTCTCTTGTGGTGCTGA
GATTCGAATTTTGATATCTTTAGGTGCTACTTTCTTCACTTCGTTTAATA
GTCGGTCACCAAAACCACGGAAAAGTGTAGATCCGCCTGATAaaacaata
ttttgataaaGAGTTTTTCTCAAATCCATATCTGATTTTTGAATAGCATA
GGCAAGTACTTCGTGTAGCCCCTCATACTCTTCACCAAGTAAATCAGGAC
GGAATAACAACTCTGGTGCTCGGAATTTTGCATTTCCAATATCCAATGGA
CTACCATCAGGAAGCATGTATCGTGTTTTCTCCCCTTCCATGCCTTCTTC
TTTCAAAGGATTCAAAGCCAAATAGCAGACTTCTTCTTTGATCTTTTTGA
CAATCTCGAATTCAGCTGTGGTCTTAAATGTGCAACCTTCTCGTTTCAAA
AGCAATTTCAGGTACCTTGTAACATCACGACCAGCTAAATCAGTTCGCAT
GATAGAATGTGGCAAAGCGAAACCTTCATAAATGGGAACAGAATGTGTTA
CACCATCACCGCAATCCAAAACAACACCTGTTGTACGACCTGTGGCATAT
AAACTGAGAACAGCTTGCATTGAAATAAACAGAGCTGGCAcgttaaaagt
ttcgaaaaacaATTCAGCAGCTTTCTCTCGGTTACGTCTTGGATTTAGTG
GAGCTTCAGTTAATAGAACAGGATGCTCCTCTGAAAAAGTAGCtaactgt
tctttggaatataTATAAGACCATATTCTTTCCATATCATTCCAATCCTG
CACTATACCATGCTCCATTGGATATTTGATATTGAGAAGACCACGATACT
CATCAGCTTTTGCACCAATAAATGTATCACCTTCTAAGGCACCAGCCATT
ACACGGACATGTTTCGGTCGACCaataaatgatgaaaaatgacattttgg
tATTTGGTCACCAGCAAAGCCAGCTTTAATCACCCCGGACCCATTATCAA
TGACTACGGGCTGGTTAGCAATAAcatcatagttactcattttgTTTTAA
TGTTAGTTTTCTAAAGTTAATGAAAAAGTCATACAATAGGACGAATAGTG
TATTACAGTCCACATACCCATCAGATAGGTATACTTTACAAGCATACTGT
ACTATAGATGAAGTTCTGATTCTCAAATTGGTGTACACGGAATAGCCCTT
TTTATAGATTCATCACTTCATGAAGTTTATACTTTT Run BLAST on NCBI protein sequence of TCONS_00058636-protein >TCONS_00058636-protein ID=TCONS_00058636-protein|Name=TCONS_00058636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MSNYDVIANQPVVIDNGSGVIKAGFAGDQIPKCHFSSFIGRPKHVRVMAG
ALEGDTFIGAKADEYRGLLNIKYPMEHGIVQDWNDMERIWSYIYSKEQLA
TFSEEHPVLLTEAPLNPRRNREKAAELFFETFNVPALFISMQAVLSLYAT
GRTTGVVLDCGDGVTHSVPIYEGFALPHSIMRTDLAGRDVTRYLKLLLKR
EGCTFKTTAEFEIVKKIKEEVCYLALNPLKEEGMEGEKTRYMLPDGSPLD
IGNAKFRAPELLFRPDLLGEEYEGLHEVLAYAIQKSDMDLRKTLYQNIVL
SGGSTLFRGFGDRLLNEVKKVAPKDIKIRISAPQERLYSTWIGGSILASL
DTFKKMWVSKKEYEDEGVKAITRKTF Run BLAST on NCBI transcript from alignment at scaffold_311:1219525..1222010 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058636 ID=TCONS_00058636|Name=TCONS_00058636|organism=Clytia hemisphaerica|type=transcript|length=2486bp|location=Sequence derived from alignment at scaffold_311:1219525..1222010 (Clytia hemisphaerica)
AAAAGTATAAACTTCATGAAGTGATGAATCTATAAAAAGGGCTATTCCGT
GTACACCAATTTGAGAATCAGAACTTCATCTATAGTACAGTATGCTTGTA
AAGTATACCTATCTGATGGGTATGTGGACTGTAATACACTATTCGTCCTA
TTGTATGACTTTTTCATTAACTTTAGAAAACTAACATTAAAAcaaaatga
gtaactatgatgTTATTGCTAACCAGCCCGTAGTCATTGATAATGGGTCC
GGGGTGATTAAAGCTGGCTTTGCTGGTGACCAAATaccaaaatgtcattt
ttcatcatttattGGTCGACCGAAACATGTCCGTGTAATGGCTGGTGCCT
TAGAAGGTGATACATTTATTGGTGCAAAAGCTGATGAGTATCGTGGTCTT
CTCAATATCAAATATCCAATGGAGCATGGTATAGTGCAGGATTGGAATGA
TATGGAAAGAATATGGTCTTATAtatattccaaagaacagttaGCTACTT
TTTCAGAGGAGCATCCTGTTCTATTAACTGAAGCTCCACTAAATCCAAGA
CGTAACCGAGAGAAAGCTGCTGAATtgtttttcgaaacttttaacgTGCC
AGCTCTGTTTATTTCAATGCAAGCTGTTCTCAGTTTATATGCCACAGGTC
GTACAACAGGTGTTGTTTTGGATTGCGGTGATGGTGTAACACATTCTGTT
CCCATTTATGAAGGTTTCGCTTTGCCACATTCTATCATGCGAACTGATTT
AGCTGGTCGTGATGTTACAAGGTACCTGAAATTGCTTTTGAAACGAGAAG
GTTGCACATTTAAGACCACAGCTGAATTCGAGATTGTCAAAAAGATCAAA
GAAGAAGTCTGCTATTTGGCTTTGAATCCTTTGAAAGAAGAAGGCATGGA
AGGGGAGAAAACACGATACATGCTTCCTGATGGTAGTCCATTGGATATTG
GAAATGCAAAATTCCGAGCACCAGAGTTGTTATTCCGTCCTGATTTACTT
GGTGAAGAGTATGAGGGGCTACACGAAGTACTTGCCTATGCTATTCAAAA
ATCAGATATGGATTTGAGAAAAACTCtttatcaaaatattgtttTATCAG
GCGGATCTACACTTTTCCGTGGTTTTGGTGACCGACTATTAAACGAAGTG
AAGAAAGTAGCACCTAAAGATATCAAAATTCGAATCTCAGCACCACAAGA
GAGATTATACTCAACTTGGATTGGTGGCTCAATTTTAGCTTCTTtagaca
ctttcaaaaagaTGTGGGTATCTAAGAAGGAGTATGAAGATGAAGGGGTA
AAAGCAATCACAAGGAAAACCTTCtagaagaaagaaattaaaaaaaaatc
ttcatacaatattttgaaattttaaactatttacgcattataaaaaaaga
gtacatCATTTCTTTACGAAGGAAATGAAAATTGTTATTTGGGCTATTTA
CCATTGATGGTCTTTGGCCATAGTTTGCCCATACGAAGCAATatctttat
attttctaaaagagATCTAGATATAGACAATTAGGTattattttaaaaga
atcatttaatTCAGTAATGTTTTAAAATCTGTGTCCTtcgtaaaatttca
ttttcattttcataatagtaaaacttcaataattttgggtctataacttt
tgaacttttaGTTGAAAACCTAGATTGATAATTTTCTCTTCTATATTGTT
TTGATAAGAAAAATTCCAAACAGCAAAGTTTTTTTGTCTTCTTGCACTGG
TATTGGggtattattttttctttataatactacatttttttcattttaac
atTCAAAAGCGTTATTGTCGCCAATAATGTCAAGTCATTGATCATTTTCT
TAGGTTCTCATGTAAGCATCCTCAAGATTTTAGGtttattttttgtataa
ttttctctttttcagtCATTCTTCAAAAAACAAGCATTCTGTTAataaat
cctaaaaactatagCTCGTTATCCGTTTTTTTAGTTCACTTCATATTATT
GTAgccaataaaagaaaaattatacaACATAGTAACTCGCAGTTACTCCT
GTTAATCTAAACAAATCCTAACTTTATAATATGTACTTGTTCTTGACATG
GTTTCATTTCCTAATAGTTATTTCGCTTTGGTTACCATTGTGCGaactta
tttattatttttttgttttagtttatgtAGTTGCTTTTACTTTTTATTGA
TCAATGAGagcttcaattttcttaaatctACAAATAATCATCTAGACATA
ATGAATAACTTGATAACAATTTATCTTAGCTCATTAGCTAATTAACTTTA
CCTATAGAGGTATGTAGACATATTTTAGGCAATGTTACATCTTAGCAAAA
TAGGGATATCCTATGTTTATATGAAAAGTATGAAATTTTCATTGATCATA
TAATCAGTAAAAGCTAtatgtaaaattaaattttatcgaatgtttttcat
tttgctacttatgaaaataattttttttttcaaaat Coding sequence (CDS) from alignment at scaffold_311:1219525..1222010 >TCONS_00058636 ID=TCONS_00058636|Name=TCONS_00058636|organism=Clytia hemisphaerica|type=CDS|length=1131bp|location=Sequence derived from alignment at scaffold_311:1219525..1222010 (Clytia hemisphaerica)
atgagtaactatgatgTTATTGCTAACCAGCCCGTAGTCATTGATAATGG
GTCCGGGGTGATTAAAGCTGGCTTTGCTGGTGACCAAATaccaaaatgtc
atttttcatcatttattGGTCGACCGAAACATGTCCGTGTAATGGCTGGT
GCCTTAGAAGGTGATACATTTATTGGTGCAAAAGCTGATGAGTATCGTGG
TCTTCTCAATATCAAATATCCAATGGAGCATGGTATAGTGCAGGATTGGA
ATGATATGGAAAGAATATGGTCTTATAtatattccaaagaacagttaGCT
ACTTTTTCAGAGGAGCATCCTGTTCTATTAACTGAAGCTCCACTAAATCC
AAGACGTAACCGAGAGAAAGCTGCTGAATtgtttttcgaaacttttaacg
TGCCAGCTCTGTTTATTTCAATGCAAGCTGTTCTCAGTTTATATGCCACA
GGTCGTACAACAGGTGTTGTTTTGGATTGCGGTGATGGTGTAACACATTC
TGTTCCCATTTATGAAGGTTTCGCTTTGCCACATTCTATCATGCGAACTG
ATTTAGCTGGTCGTGATGTTACAAGGTACCTGAAATTGCTTTTGAAACGA
GAAGGTTGCACATTTAAGACCACAGCTGAATTCGAGATTGTCAAAAAGAT
CAAAGAAGAAGTCTGCTATTTGGCTTTGAATCCTTTGAAAGAAGAAGGCA
TGGAAGGGGAGAAAACACGATACATGCTTCCTGATGGTAGTCCATTGGAT
ATTGGAAATGCAAAATTCCGAGCACCAGAGTTGTTATTCCGTCCTGATTT
ACTTGGTGAAGAGTATGAGGGGCTACACGAAGTACTTGCCTATGCTATTC
AAAAATCAGATATGGATTTGAGAAAAACTCtttatcaaaatattgtttTA
TCAGGCGGATCTACACTTTTCCGTGGTTTTGGTGACCGACTATTAAACGA
AGTGAAGAAAGTAGCACCTAAAGATATCAAAATTCGAATCTCAGCACCAC
AAGAGAGATTATACTCAACTTGGATTGGTGGCTCAATTTTAGCTTCTTta
gacactttcaaaaagaTGTGGGTATCTAAGAAGGAGTATGAAGATGAAGG
GGTAAAAGCAATCACAAGGAAAACCTTCtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058636-exon-scaffold_311-1491911889:1219525..1222010 | TCONS_00058636-exon-scaffold_311-1491911889:1219525..1222010 | Clytia hemisphaerica | exon |
| TCONS_00058636-exon-scaffold_311-1510915933:1219525..1222010 | TCONS_00058636-exon-scaffold_311-1510915933:1219525..1222010 | Clytia hemisphaerica | exon |
| TCONS_00058636-exon-scaffold_311-1575043694:1219525..1222010 | TCONS_00058636-exon-scaffold_311-1575043694:1219525..1222010 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:1219525..1222010 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058636 vs. Swiss-Prot (Human)
Match: ACTY (Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=1) HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0 Identity = 297/373 (79.62%), Postives = 343/373 (91.96%), Query Frame = -2
Query: 1172 MSNYDVIANQPVVIDNGSGVIKAGFAGDQIPKCHFSSFIGRPKHVRVMAGALEGDTFIGAKADEYRGLLNIKYPMEHGIVQDWNDMERIWSYIYSKEQLATFSEEHPVLLTEAPLNPRRNREKAAELFFETFNVPALFISMQAVLSLYATGRTTGVVLDCGDGVTHSVPIYEGFALPHSIMRTDLAGRDVTRYLKLLLKREGCTFKTTAEFXXXXXXXXXVCYLALNPLKEEGMEGEKTRYMLPDGSPLDIGNAKFRAPELLFRPDLLGEEYEGLHEVLAYAIQKSDMDLRKTLYQNIVLSGGSTLFRGFGDRLLNEVKKVAPKDIKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEDEGVKAITR 2290
M +YD+IANQPVVIDNGSGVIKAGFAGDQIPK F +++GRPKH+RVMAGALEGD FIG KA+E+RGLL I+YPMEHG+V+DWNDMERIW Y+YSK+QL TFSEEHPVLLTEAPLNP +NREKAAE+FFETFNVPALFISMQAVLSLYATGRTTGVVLD GDGVTH+VPIYEGFA+PHSIMR D+AGRDV+RYL+LLL++EG F T+AEFE+V+ IKE CYL++NP K+E +E EK +Y LPDGS LD+G A+FRAPELLF+PDL+G+E EGLHEV+A+AI KSDMDLR+TL+ NIVLSGGSTLF+GFGDRLL+EVKK+APKDIKI+ISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYE++G +AI R
Sbjct: 1 MESYDIIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTLDVGPARFRAPELLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLFANIVLSGGSTLFKGFGDRLLSEVKKLAPKDIKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHR 373
The following BLAST results are available for this feature:
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