TCONS_00058627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058627
Unique NameTCONS_00058627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058627 ID=TCONS_00058627|Name=TCONS_00058627|organism=Clytia hemisphaerica|type=transcript|length=947bp
CCGATAGACAACATTCAAACAGACTCAGATCATCCAACCAATCCAATCAA
ATCCAACTCAACCAAATTAATCGATCACTCAACCAATTGTATCTATCGAC
CAATCAACTAGACCGATAGAATCAAACTACTGTATCACGCTGATCATCAT
CGTGACACGCCCACTCCAAATCACTTCAACAAGGTACATAAATTTATCTT
CACTCAACCTTTATGTCATCAAGACCTAAACGTAATATCAAACCAATCAA
GTACGACATACTTGGTTCAACTGGACAAGTCGTATACAAACCAGACCCTC
AATCTGAAGTTGCGCCTACTGACCAATCAGACATTTCAAACGTACCTTCA
CCAACCATGTCAGAGTCTAACACATCCAACTCTGATATAACAGACCTGAT
AGATGAGGCAAATGACCTGATCAATGAAAGTCCACTTCGTGCATGTGTCA
CATCACAAGAAGTTGATGACCTCATCAAAGAACACAAGAGTCATCGCACA
TCTATCCGCCAAAAACTCAAAGACGTCAACGCTGATGATGTCCTACGCTT
ATCCATTAACAAATGTTATGACTCCATCTCAAATGCTATCAAGGAAGCCA
TCGACTACAAAGCGAAACTCAACCTTGCAACCCATGTGAAACAATCAAGT
GAATCAACAGCCAAAGAATCTGCTACTGTTTTTGCTCTCGAAACACTGGA
CCGCACCATGATTCAGCTCAAGACACAGTTTGACCTGAAACTTGACGATG
TAAGTGATGTTGAACTTGTCCAATTTAAGAACGAAAACAGCTCTATCGTC
AAGAGGTTCGAAAAGTTATCCCAAAAGTATGAAGAAGTCCTACAATCACC
AATCACAAAAGCAGAGACATTGTTATTAGTGAAGAACATTGGTGAGAGAT
TTGTAAAATTAGATTCTCTCAAACACAACTTCATCACAAACGTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00058627-protein

>TCONS_00058627-protein ID=TCONS_00058627-protein|Name=TCONS_00058627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MSSRPKRNIKPIKYDILGSTGQVVYKPDPQSEVAPTDQSDISNVPSPTMS
ESNTSNSDITDLIDEANDLINESPLRACVTSQEVDDLIKEHKSHRTSIRQ
KLKDVNADDVLRLSINKCYDSISNAIKEAIDYKAKLNLATHVKQSSESTA
KESATVFALETLDRTMIQLKTQFDLKLDDVSDVELVQFKNENSSIVKRFE
KLSQKYEEVLQSPITKAETLLLVKNIGERFVKLDSLKHNFITNVN
Run BLAST on NCBI

transcript from alignment at scaffold_311:896270..897216

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058627 ID=TCONS_00058627|Name=TCONS_00058627|organism=Clytia hemisphaerica|type=transcript|length=947bp|location=Sequence derived from alignment at scaffold_311:896270..897216 (Clytia hemisphaerica)
GTTGACGTTTGTGATGAAGTTGTGTTTGAGAGAATCTAATTTTACAAATC
TCTCACCAATGTTCTTCACTAATAACAATGTCTCTGCTTTTGTGATTGGT
GATTGTAGGACTTCTTCATACTTTTGGGATAACTTTTCGAACCTCTTGAC
GATAGAGCTGTTTTCGTTCTTAAATTGGACAAGTTCAACATCACTTACAT
CGTCAAGTTTCAGGTCAAACTGTGTCTTGAGCTGAATCATGGTGCGGTCC
AGTGTTTCGAGAGCAAAAACAGTAGCAGATTCTTTGGCTGTTGATTCACT
TGATTGTTTCACATGGGTTGCAAGGTTGAGTTTCGCTTTGTAGTCGATGG
CTTCCTTGATAGCATTTGAGATGGAGTCATAACATTTGTTAATGGATAAG
CGTAGGACATCATCAGCGTTGACGTCTTTGAGTTTTTGGCGGATAGATGT
GCGATGACTCTTGTGTTCTTTGATGAGGTCATCAACTTCTTGTGATGTGA
CACATGCACGAAGTGGACTTTCATTGATCAGGTCATTTGCCTCATCTATC
AGGTCTGTTATATCAGAGTTGGATGTGTTAGACTCTGACATGGTTGGTGA
AGGTACGTTTGAAATGTCTGATTGGTCAGTAGGCGCAACTTCAGATTGAG
GGTCTGGTTTGTATACGACTTGTCCAGTTGAACCAAGTATGTCGTACTTG
ATTGGTTTGATATTACGTTTAGGTCTTGATGACATAAAGGTTGAGTGAAG
ATAAATTTATGTACCTTGTTGAAGTGATTTGGAGTGGGCGTGTCACGATG
ATGATCAGCGTGATACAGTAGTTTGATTCTATCGGTCTAGTTGATTGGTC
GATAGATACAATTGGTTGAGTGATCGATTAATTTGGTTGAGTTGGATTTG
ATTGGATTGGTTGGATGATCTGAGTCTGTTTGAATGTTGTCTATCGG

Coding sequence (CDS) from alignment at scaffold_311:896270..897216

>TCONS_00058627 ID=TCONS_00058627|Name=TCONS_00058627|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_311:896270..897216 (Clytia hemisphaerica)
GTTGACGTTTGTGATGAAGTTGTGTTTGAGAGAATCTAATTTTACAAATC
TCTCACCAATGTTCTTCACTAATAACAATGTCTCTGCTTTTGTGATTGGT
GATTGTAGGACTTCTTCATACTTTTGGGATAACTTTTCGAACCTCTTGAC
GATAGAGCTGTTTTCGTTCTTAAATTGGACAAGTTCAACATCACTTACAT
CGTCAAGTTTCAGGTCAAACTGTGTCTTGAGCTGAATCATGGTGCGGTCC
AGTGTTTCGAGAGCAAAAACAGTAGCAGATTCTTTGGCTGTTGATTCACT
TGATTGTTTCACATGGGTTGCAAGGTTGAGTTTCGCTTTGTAGTCGATGG
CTTCCTTGATAGCATTTGAGATGGAGTCATAACATTTGTTAATGGATAAG
CGTAGGACATCATCAGCGTTGACGTCTTTGAGTTTTTGGCGGATAGATGT
GCGATGACTCTTGTGTTCTTTGATGAGGTCATCAACTTCTTGTGATGTGA
CACATGCACGAAGTGGACTTTCATTGATCAGGTCATTTGCCTCATCTATC
AGGTCTGTTATATCAGAGTTGGATGTGTTAGACTCTGACATGGTTGGTGA
AGGTACGTTTGAAATGTCTGATTGGTCAGTAGGCGCAACTTCAGATTGAG
GGTCTGGTTTGTATACGACTTGTCCAGTTGAACCAAGTATGTCGTACTTG
ATTGGTTTGATATTACGTTTAGGTCTTGATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036936XLOC_036936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058627-exon-scaffold_311-1491911889:896270..897216TCONS_00058627-exon-scaffold_311-1491911889:896270..897216Clytia hemisphaericaexon
TCONS_00058627-exon-scaffold_311-1510915933:896270..897216TCONS_00058627-exon-scaffold_311-1510915933:896270..897216Clytia hemisphaericaexon
TCONS_00058627-exon-scaffold_311-1575043694:896270..897216TCONS_00058627-exon-scaffold_311-1575043694:896270..897216Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058627-proteinTCONS_00058627-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:896270..897216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97099	1.68763	1.30633	1.01178	1.16692	1.17826	0.865273	0.92578	0.607651	1.1541	0.0487042	0.832422	1.05507	0.630856	0.245676	0.234354	0.18044	0.332902	0.511025	0.534751	0.325357	0.544106	0.275597	0.150334	0.670978	0.690959	0.395504	0.140698	0.800356	0.924161
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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