TCONS_00058626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058626
Unique NameTCONS_00058626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058626 ID=TCONS_00058626|Name=TCONS_00058626|organism=Clytia hemisphaerica|type=transcript|length=348bp
CCGAACTCAAAATCGATTTCTTTGATTACAGGGAATGACTAAAGGCTTGT
TTTGAGTTATCAAGAACCCAAATATATATTATGGAGagagttttattaaa
aaaagagaTCTAATATATTATTTCAAAAAGTCTAGAAATATATAGAGAGA
GTTCCAACAGAGACATATTTATTCTTGTCGGCGTACAAGACGAtattata
tttacatttttattaTAGTTATATCGTACATTTTATTTATCTAAGGATAT
TGATCCGGTTGAGAGTTTTTTCCCTTGAAATCGCGTTTTACTTTCGattt
ttcatactgctgaagacTGAAAACAagataaattattttcaacagaAT
Run BLAST on NCBI

transcript from alignment at scaffold_311:874598..874945

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058626 ID=TCONS_00058626|Name=TCONS_00058626|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at scaffold_311:874598..874945 (Clytia hemisphaerica)
ATtctgttgaaaataatttatctTGTTTTCAgtcttcagcagtatgaaaa
atCGAAAGTAAAACGCGATTTCAAGGGAAAAAACTCTCAACCGGATCAAT
ATCCTTAGATAAATAAAATGTACGATATAACTAtaataaaaatgtaaata
taataTCGTCTTGTACGCCGACAAGAATAAATATGTCTCTGTTGGAACTC
TCTCTATATATTTCTAGACTTTTTGAAATAATATATTAGAtctctttttt
taataaaactctCTCCATAATATATATTTGGGTTCTTGATAACTCAAAAC
AAGCCTTTAGTCATTCCCTGTAATCAAAGAAATCGATTTTGAGTTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036935XLOC_036935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058626-exon-scaffold_311-1491911889:874598..874945TCONS_00058626-exon-scaffold_311-1491911889:874598..874945Clytia hemisphaericaexon
TCONS_00058626-exon-scaffold_311-1510915933:874598..874945TCONS_00058626-exon-scaffold_311-1510915933:874598..874945Clytia hemisphaericaexon
TCONS_00058626-exon-scaffold_311-1575043694:874598..874945TCONS_00058626-exon-scaffold_311-1575043694:874598..874945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:874598..874945 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.55235	1.49337	0	0.282732	2.75359	2.17592	2.62516	2.76485	1.07541	0.79924	3.87881	0	1.35799	3.17314	1.01452	0.777665	3.83208	1.5711	1.3566	2.27134	3.20808	2.88885	2.92647	6.65148	4.11052	3.1794	1.04993	1.12052	1.98304	2.88629
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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