TCONS_00058623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058623
Unique NameTCONS_00058623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058623 ID=TCONS_00058623|Name=TCONS_00058623|organism=Clytia hemisphaerica|type=transcript|length=443bp
attttgtaaaatatagaaaactttgAACGAGAAAAGTTTGTAGCTATTTT
TCATGATGACGATAAATCATAATATAAGTGATTTTGTCCGTTAACGCAAA
TGTGTTTCTAAATTTGTCCATTTTGTTTACCTTGTTGCACCTGAATGAAT
GAGTGTATATAGCACGTATAACttttttatatccatacaggggacGGAGG
AACATTTGCAAGGGGTAATTCGAGCAGATTTTCCAGCGGGTCTAAAAGaa
tgttgttttttattcatttttcgaGGAGgtaaagaattattttgaagaat
ttcaagAATAATTTTAGTTCGACCACCACGACTTTAAggtaaacaaagaa
attttccaaaactGTTTTGCAAATTCTATTcacacatttccaagaaatat
tttttgatttgaaaaggtTCGCCCAcccccattatggaaattt
Run BLAST on NCBI

transcript from alignment at scaffold_311:861035..861477

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058623 ID=TCONS_00058623|Name=TCONS_00058623|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at scaffold_311:861035..861477 (Clytia hemisphaerica)
aaatttccataatgggggTGGGCGAaccttttcaaatcaaaaaatatttc
ttggaaatgtgtgAATAGAATTTGCAAAACagttttggaaaatttctttg
tttaccTTAAAGTCGTGGTGGTCGAACTAAAATTATTcttgaaattcttc
aaaataattctttacCTCCtcgaaaaatgaataaaaaacaacattCTTTT
AGACCCGCTGGAAAATCTGCTCGAATTACCCCTTGCAAATGTTCCTCCgt
cccctgtatggatataaaaaaGTTATACGTGCTATATACACTCATTCATT
CAGGTGCAACAAGGTAAACAAAATGGACAAATTTAGAAACACATTTGCGT
TAACGGACAAAATCACTTATATTATGATTTATCGTCATCATGAAAAATAG
CTACAAACTTTTCTCGTTcaaagttttctatattttacaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036932XLOC_036932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058623-exon-scaffold_311-1491911889:861035..861477TCONS_00058623-exon-scaffold_311-1491911889:861035..861477Clytia hemisphaericaexon
TCONS_00058623-exon-scaffold_311-1510915933:861035..861477TCONS_00058623-exon-scaffold_311-1510915933:861035..861477Clytia hemisphaericaexon
TCONS_00058623-exon-scaffold_311-1575043694:861035..861477TCONS_00058623-exon-scaffold_311-1575043694:861035..861477Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:861035..861477 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.295696	0	0	0.26051	0.226524	0.217716	0	0.383287	0.438143	0	0.207349	1.47078	0.328642	0	0	0.341449	0.379311	1.14874	0.840482	0.439768	0.519595	0.196864	0.171362	0	0.894843	0.465802	0	0.199384	0.398256
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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