TCONS_00058622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058622
Unique NameTCONS_00058622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1041

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058622 ID=TCONS_00058622|Name=TCONS_00058622|organism=Clytia hemisphaerica|type=transcript|length=1041bp
ATGGAAACCATATTTAAATGacatttaaaaatataaaatttacaaAGCTT
ATGAACCCAACttctaaaattaaaattgtTCATTTATCTCCTCTTTTTAT
CCCTTGTTGAGAAATATACACTGGGATACGCAAAGACAGGGGTGTTCAGT
TGGTTTTCTTGCTCCTAAATAAAAAGTACCAAAGGTGTTTTTTATCACGg
tcttttttgtgatttttttgcacacatTATTAGCTGATGCGATAAGTGTA
CCGTTGGATAGCTAAACCTTCTTACCCCCGTAAAAAATCTCCTATCGCCA
CTTTACAACGAAGAAAGTCCGACACTTTGGCTAGGTTACTTTAATTTTTA
GGCGCTCAGTATCAAAGTCTTAATCTTTTGTCCATTCACTTATACAtagc
aaaaaaatcattttttgccGGTATGTCCGTAATAAACAGCGGAACGATCC
CGGAAATACGCCATGAATATTTTACCAGGGATGAGAAAGTTTAACCATCC
TACGATACTCATTTTGTTCACGATATTCGATCCCTCTTAAAAACATCGCA
ATCTTCCGAATCTTTGGTCGTTCTAAATTCTATCCAAATTGAATTACAAA
CTTCCAACTAAACAATTTTAGTCGAATCTAATAACGTCAGCATCTTTGAC
AACTACACGACGTCGCACTTTTCACTGTATGATATTTCGTCTGAAGGTAT
TTACAGTTCAACATTATGGTTACTTCGACATATTCCGTAACTTTACAACA
CCATACATTTTCTTGTAAATGGATTTCTAATTTCTTATTCTTTTCTGTTT
CATGATAAGGTGAATGACACGAAATACATGCACCTAAACAAGTGCTTATC
TCTACTGTCACGGGTTTGCATTCAGGTAATTTGACGTCTAAATTGAACGC
TTGTAAGTTACATTTTTGTTTACGTTTAACATGTGCTACAAGATTTCGTC
CTTGAACGtattgtttgttgtttatgttgaaaaaaattatgtttattATC
ATCAATATTTGTTCGATCTTCATGTTCGAAGCTTTTTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00058622-protein

>TCONS_00058622-protein ID=TCONS_00058622-protein|Name=TCONS_00058622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
QEKASNMKIEQILMIINIIFFNINNKQYVQGRNLVAHVKRKQKCNLQAFN
LDVKLPECKPVTVEISTCLGACISCHSPYHETEKNKKLEIHLQENVWCCK
VTEYVEVTIMLNCKYLQTKYHTVKSATSCSCQRC
Run BLAST on NCBI

transcript from alignment at scaffold_311:859928..860968

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058622 ID=TCONS_00058622|Name=TCONS_00058622|organism=Clytia hemisphaerica|type=transcript|length=1041bp|location=Sequence derived from alignment at scaffold_311:859928..860968 (Clytia hemisphaerica)
CAAGAAAAAGCTTCGAACATGAAGATCGAACAAATATTGATGATaataaa
cataatttttttcaacataaacaacaaacaataCGTTCAAGGACGAAATC
TTGTAGCACATGTTAAACGTAAACAAAAATGTAACTTACAAGCGTTCAAT
TTAGACGTCAAATTACCTGAATGCAAACCCGTGACAGTAGAGATAAGCAC
TTGTTTAGGTGCATGTATTTCGTGTCATTCACCTTATCATGAAACAGAAA
AGAATAAGAAATTAGAAATCCATTTACAAGAAAATGTATGGTGTTGTAAA
GTTACGGAATATGTCGAAGTAACCATAATGTTGAACTGTAAATACCTTCA
GACGAAATATCATACAGTGAAAAGTGCGACGTCGTGTAGTTGTCAAAGAT
GCTGACGTTATTAGATTCGACTAAAATTGTTTAGTTGGAAGTTTGTAATT
CAATTTGGATAGAATTTAGAACGACCAAAGATTCGGAAGATTGCGATGTT
TTTAAGAGGGATCGAATATCGTGAACAAAATGAGTATCGTAGGATGGTTA
AACTTTCTCATCCCTGGTAAAATATTCATGGCGTATTTCCGGGATCGTTC
CGCTGTTTATTACGGACATACCggcaaaaaatgatttttttgctaTGTAT
AAGTGAATGGACAAAAGATTAAGACTTTGATACTGAGCGCCTAAAAATTA
AAGTAACCTAGCCAAAGTGTCGGACTTTCTTCGTTGTAAAGTGGCGATAG
GAGATTTTTTACGGGGGTAAGAAGGTTTAGCTATCCAACGGTACACTTAT
CGCATCAGCTAATAatgtgtgcaaaaaaatcacaaaaaagacCGTGATAA
AAAACACCTTTGGTACTTTTTATTTAGGAGCAAGAAAACCAACTGAACAC
CCCTGTCTTTGCGTATCCCAGTGTATATTTCTCAACAAGGGATAAAAAGA
GGAGATAAATGAacaattttaattttagaaGTTGGGTTCATAAGCTttgt
aaattttatatttttaaatgtCATTTAAATATGGTTTCCAT

Coding sequence (CDS) from alignment at scaffold_311:859928..860968

>TCONS_00058622 ID=TCONS_00058622|Name=TCONS_00058622|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_311:859928..860968 (Clytia hemisphaerica)
CAAGAAAAAGCTTCGAACATGAAGATCGAACAAATATTGATGATaataaa
cataatttttttcaacataaacaacaaacaataCGTTCAAGGACGAAATC
TTGTAGCACATGTTAAACGTAAACAAAAATGTAACTTACAAGCGTTCAAT
TTAGACGTCAAATTACCTGAATGCAAACCCGTGACAGTAGAGATAAGCAC
TTGTTTAGGTGCATGTATTTCGTGTCATTCACCTTATCATGAAACAGAAA
AGAATAAGAAATTAGAAATCCATTTACAAGAAAATGTATGGTGTTGTAAA
GTTACGGAATATGTCGAAGTAACCATAATGTTGAACTGTAAATACCTTCA
GACGAAATATCATACAGTGAAAAGTGCGACGTCGTGTAGTTGTCAAAGAT
GCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036931XLOC_036931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058622-exon-scaffold_311-1491911889:859928..860968TCONS_00058622-exon-scaffold_311-1491911889:859928..860968Clytia hemisphaericaexon
TCONS_00058622-exon-scaffold_311-1510915933:859928..860968TCONS_00058622-exon-scaffold_311-1510915933:859928..860968Clytia hemisphaericaexon
TCONS_00058622-exon-scaffold_311-1575043694:859928..860968TCONS_00058622-exon-scaffold_311-1575043694:859928..860968Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058622-proteinTCONS_00058622-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:859928..860968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0472353	0.460036	0.136322	0.438579	0.564565	0.718664	0.445091	2.41929	0.397586	0.652269	0.765743	0.0726398	0.0779536	3.61722	3.18258	1.63184	2.2768	1.36053	0.904936	1.36897	1.5113	1.46503	2.04298	0.81858	0.436805	0.331301	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004133DAN
IPR029034Cystine-knot_cytokine
IPR006207Cys_knot_C
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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