TCONS_00058612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058612
Unique NameTCONS_00058612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058612 ID=TCONS_00058612|Name=TCONS_00058612|organism=Clytia hemisphaerica|type=transcript|length=361bp
GGAACACTCAACCTCTTATTAATTTAATATCACATCTTGGTTCTtgaata
aatctttttcaaaggtAAATACAATCAAAAAACTCTTGTTCAAACGGAAC
TTACAATGTTTTTCAAACTCACGCGATCTCTCGTCACTCTCTCACGCTTT
CACTTATTTCCACGTCATGTCTTTATCCTCCCGTTTCATATTTCTCTAAT
GTTTCTAGTTAAGTTTGGGATATTTGAAACCAAAAATACATACACTATTT
ACACAATCGTTGTAGATTCTCTCTTCTCTACTCCTCTCATCTCTcattca
aaaaaggaaaaatatcacTTACAGTTTTGGGGACTATCTTTGAAGTCTAA
AAGAAATACTG
Run BLAST on NCBI

transcript from alignment at scaffold_311:623754..624114

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058612 ID=TCONS_00058612|Name=TCONS_00058612|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at scaffold_311:623754..624114 (Clytia hemisphaerica)
CAGTATTTCTTTTAGACTTCAAAGATAGTCCCCAAAACTGTAAgtgatat
ttttccttttttgaatgAGAGATGAGAGGAGTAGAGAAGAGAGAATCTAC
AACGATTGTGTAAATAGTGTATGTATTTTTGGTTTCAAATATCCCAAACT
TAACTAGAAACATTAGAGAAATATGAAACGGGAGGATAAAGACATGACGT
GGAAATAAGTGAAAGCGTGAGAGAGTGACGAGAGATCGCGTGAGTTTGAA
AAACATTGTAAGTTCCGTTTGAACAAGAGTTTTTTGATTGTATTTacctt
tgaaaaagatttattcaAGAACCAAGATGTGATATTAAATTAATAAGAGG
TTGAGTGTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036921XLOC_036921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058612-exon-scaffold_311-1491911889:623754..624114TCONS_00058612-exon-scaffold_311-1491911889:623754..624114Clytia hemisphaericaexon
TCONS_00058612-exon-scaffold_311-1510915933:623754..624114TCONS_00058612-exon-scaffold_311-1510915933:623754..624114Clytia hemisphaericaexon
TCONS_00058612-exon-scaffold_311-1575043694:623754..624114TCONS_00058612-exon-scaffold_311-1575043694:623754..624114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:623754..624114 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.233406	0.27532	0.294957	0.0907145	0.858206	0.497457	1.40218	0.79315	0.398865	0	0	0.310894	1.73828	0.53408	0.812944	0.469177	1.06958	1.06995	2.59838	2.43986	2.84537	2.82511	0.639954	2.21503	0.250598	0	3.33479	4.90956	2.96477	3.60523
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top